BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1961511 =	129 (1.420)	99 (1.140) +TATTTT	4/268	9.1	47.2%	noncoding (74/74 nt)	USA300TCH1516_01819	tRNA‑Glu
*	?	USA300TCH1516_ALE	= 1998272	102 (1.120)	99 (1.140) +TATTTT	4/268	9.1	47.2%	noncoding (1/76 nt)	USA300TCH1516_01882	tRNA‑Val
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 129 total aligned reads displayed.

AAGGTAAGGGATTCGAACCCTTGAGACGCTTGTGACGCCTACACACTTTCCAGGCGTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTCGAACCTACGACCGATCGGTTAACAGCCGATAGCTCTACCACTGAGC  >  USA300TCH1516_ALE/1961372‑1961650

aaGGTAAGGGATTCGAACCCTTGAGACGCTTGTGACGCCTACACACTTTCCAGGCGTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTAt                                                                                                                                            >  1:423169/1‑141 (MQ=255)

 aGGTAAGGGATTCGAACCCTTGAGACGCTTGTGACGCCTACACACTTTCCAGGCGTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCCCTTCTGCTGGTATg                                                                                                                                           >  1:793967/1‑141 (MQ=255)

    gaaGGGGTTCGAACCCGCGAGACGCTGGTGACGCCTACACACTTTCCAGGCGTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACt                                                                                                                                        <  2:592352/140‑1 (MQ=255)

     aaGGGATTCGAACCCTTGAGACGCTTGTGACGCCTACACACTTTCCAGGCGTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATCACTc                                                                                                                                       >  1:295042/1‑141 (MQ=255)

      aGGGATTCGAACCCTTGAGACGCTTGTGACGCCTACACACTTTCCAGGCGTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTcc                                                                                                                                      >  2:976543/1‑141 (MQ=255)

        ggATTCGAACCCTTGAGACGCTTGTGACGCCTACACACTTTCCAGGCGTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTCTGACTGCTa                                                                                                                                    >  2:59598/1‑141 (MQ=255)

                aCCCTTGAGACGCTTGTGACGCCTACACACTTTCCAGGCGTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTc                                                                                                                            <  1:300729/141‑1 (MQ=255)

                aCCCTTGAGACGCTTGTGACGCCTACACACTTTCCAGGCGTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTAACTTCTGCGTGTATGACTCCTACGGGACTc                                                                                                                            <  2:705082/141‑1 (MQ=255)

                aCCCGTGAGAGGCTTGTGACGCCTACACACTTTCCAGGCGGGCTCCTTCGTCCAGCTCGTACAACCTTCCGCAACAAATAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTc                                                                                                                            <  2:225129/141‑1 (MQ=255)

                     tGAGACGCTTGTGACGCCTACACACTTTCCAGGCGTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAAcc                                                                                                                       >  1:105972/1‑141 (MQ=255)

                          cGCTTGTGACGCCTACACACTTTCCAGGCGTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCgtgt                                                                                                                  >  1:379025/1‑141 (MQ=255)

                           gCTTGTGACGCCTACACACTTTCCAGGCGTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGtt                                                                                                                 >  1:996169/1‑141 (MQ=255)

                             ttGTGACGCCTACACACTTTCCAGGCGTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATCAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTAc                                                                                                               >  2:496004/1‑141 (MQ=255)

                              tttgACGCCTACACACTTGACAGGCGTGCCTCTACGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAGGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTAcc                                                                                                              <  1:205620/139‑1 (MQ=255)

                              tgtgACGCCTACACACTTTCCAGGCGTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTAcc                                                                                                              <  2:896538/141‑1 (MQ=255)

                              tgggACGCCTACGCCCCTTCCAGGCGGGCTTCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTAcc                                                                                                              <  2:59775/138‑1 (MQ=255)

                              tgggACGCCTACCCACCTTCCAGGCGTGCTCCTGCGGCCAGCTCGGACAACCTGCCTCAACAATAAATATGGAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTAcc                                                                                                              <  2:516532/138‑1 (MQ=255)

                                tgACGCCTACACACTTTCCAGGCGTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTAccgc                                                                                                            >  1:794809/1‑141 (MQ=255)

                                tgACGCCTACACACTTTCCAGGCGTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTAccgc                                                                                                            >  1:938857/1‑141 (MQ=255)

                                 gACGCCTACACACTTTCCAGGCGTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTAccgcc                                                                                                           <  1:991311/141‑1 (MQ=255)

                                  gcGCCTACACACTTTCCAGGCGTGCTCCTTTGGCCAGCTCGGACAACCCTCCTAAACAATAAAAAAGAAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTAccgccg                                                                                                          <  2:49872/140‑1 (MQ=39)

                                  aCGCCTCCACAGTTTCCAGGCGGACTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCATCCGGTACTCGAACCCGTGTTAccgccg                                                                                                          <  2:961564/141‑1 (MQ=255)

                                  aCGCCTACACACTTTCCAGGCGTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGTTATTTCACTTCTGCTTGTATGACTCTTACGGGACTCGAACCCGTGTTAccgccg                                                                                                          <  1:643089/141‑1 (MQ=255)

                                  aCGCCTACACACTTTCCAGGCGTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGGCTCCTACGGGACTCGAAACCGTCTTTccgccg                                                                                                          >  2:152697/1‑141 (MQ=255)

                                  aCGCCTACACACTTTCCAGGCGTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCTTTTCCGTGTTAccgccg                                                                                                          <  1:989080/141‑1 (MQ=255)

                                  aCGCCTACACACTTTCCAGGCGTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTAccgccg                                                                                                          <  1:998207/141‑1 (MQ=255)

                                  aCGCCTACACACTTTCCAGGCGTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTAccgccg                                                                                                          <  1:114266/141‑1 (MQ=255)

                                      cTACACACTTTCCAGGCGTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACCGAAGCGATATGTCACTTCTGCTTGTATGACTCCTACGGGACTCGACCCCGTGTTCCCGCCGTGaa                                                                                                      >  1:4848/1‑141 (MQ=255)

                                      cTACACACTTTCCAGGCGTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGaa                                                                                                      >  2:968603/1‑141 (MQ=255)

                                        ccccccTTTCCATGCGCGCCCCGTCGGCCAGCTCGGACAACCTTGCTCAACAATCAATATGTAATAAAAAAACAGAAGCGATATTCCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAg                                                                                                    <  2:924234/136‑1 (MQ=37)

                                         cacccTGTCGAGGCGTGGTTCTGCGGCCAGCGCGGTCTACCTTTCCCAACAAAAAATATGTAACAAAAAAACAGAAGCGATATTTCATTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAgg                                                                                                   <  2:223365/141‑1 (MQ=25)

                                         cacacTTTCCAGGCGTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGTGACTCGAACCCGTGTTACCGCCGTGAAAgg                                                                                                   >  1:749629/1‑141 (MQ=255)

                                         cacacTTTCCAGGCGTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAgg                                                                                                   >  1:920414/1‑141 (MQ=255)

                                          ccacTTTCCAGTCGTGCTCCTTCGGCCAGCTCGGACAACCTTCCGCAACAATAAATATTTAATAAAAAAACAGAAGCGCTATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAggg                                                                                                  <  1:205403/140‑1 (MQ=255)

                                           cacTTTCCAGGCGTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATACAAAAACAGAAGCGATATTTCACTTATGTTAACAAAACGACTACGGGACTCGCACCCGTGTTACCGCCGTGAAAGGGc                                                                                                 >  1:718800/1‑141 (MQ=37)

                                            acTTTCCAGGCGCGCTCCTTCGGCCAGCTCGGACAACCCTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCg                                                                                                <  1:399360/141‑1 (MQ=255)

                                             cTTTCCAGGCGTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACACGTGTTACCGCCGTGAAAGGGCgg                                                                                               >  2:614129/1‑141 (MQ=255)

                                                tCCAGGCGTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGgtgg                                                                                            >  1:893006/1‑140 (MQ=255)

                                                 ccAGGCGTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCACCAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGGGAAAGGGCGGTGTc                                                                                           >  1:683441/1‑141 (MQ=255)

                                                 ccAGGCGTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTc                                                                                           >  2:443222/1‑141 (MQ=255)

                                                  cAGGCGTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAACAAAACAGAAGCGATATTTCACTTCTGCTTGTAGGACACCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCt                                                                                          >  2:19554/1‑141 (MQ=255)

                                                  cAGGCGTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGCCCCCTACGGGACTCGAACCCGTGGTACCGCCGCGAAAGAGGAGTGTcc                                                                                          >  2:476590/1‑140 (MQ=255)

                                                  cAGGCGTGCGCCTTCGGCCAGCTCGGACAACCTCCATGAACGATAGATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCt                                                                                          >  2:497344/1‑141 (MQ=37)

                                                   gggCGTGCCCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCtt                                                                                         <  2:605629/140‑1 (MQ=255)

                                                   aGGCGTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCGTACGGGACCCGAACCCGTGTTACCGCCGTGAAAGGGCGGGGTCtt                                                                                         >  1:202451/1‑141 (MQ=255)

                                                   aGGCGTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGGGGTTTCtt                                                                                         >  1:487870/1‑141 (MQ=255)

                                                   aGGCGTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTCTCtt                                                                                         >  2:921317/1‑141 (MQ=255)

                                                   aGGCGTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGGGAAAGGGCGGTGTCtt                                                                                         >  1:56219/1‑141 (MQ=255)

                                                      cGTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAAc                                                                                      <  2:690137/141‑1 (MQ=255)

                                                       gTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAAcc                                                                                     >  2:651215/1‑141 (MQ=255)

                                                        tGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGGGTCTGAACCg                                                                                    >  1:706255/1‑141 (MQ=255)

                                                          cTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCt                                                                                  <  1:615819/141‑1 (MQ=255)

                                                            ccTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTg                                                                                >  2:361479/1‑141 (MQ=255)

                                                                    cAGCTCGGACAACCTTCCTCAACACTAAATATGTAATAACAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGa                                                                        >  1:893889/1‑141 (MQ=255)

                                                                    cAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTAACTTCGGCTTGTATGACTCCTACGGGACTCGAACACGTGTTACCACGGTGAAAGGGCGGTGTCTTAACCGACTGACCAAGGa                                                                        >  2:333788/1‑141 (MQ=37)

                                                                      gcacGGACAACCTGCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACGTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGc                                                                      >  2:761923/4‑141 (MQ=255)

                                                                             cAACCTTCCTCGCCCATAAATATGTAATAAAAAACCAGAAGCGGTAGCGCCCTTCTGCTTGTATGACTCCTTCGGTACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCt                                                               <  2:683441/141‑1 (MQ=18)

                                                                             cAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCt                                                               <  2:284858/141‑1 (MQ=255)

                                                                               aCCTTCCTCAACAATAAATATGTACTAAAAGAACAGAAGCGATATTTCACTTCTGCTGGTATGAATCCTACGGGACTCGCACCCGGGTTGCCGACGTGAACGGGCGGGGTCTTAACCGCTAGACCAAGGGGCCCTGGCTcc                                                             >  2:759761/1‑141 (MQ=255)

                                                                               aCCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGACAGGGCGGTGTCTTAACCGCTTGACCAATGAGCAATGGATcc                                                             >  1:286000/1‑141 (MQ=255)

                                                                               aCCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCCTGGCTcc                                                             >  2:663770/1‑141 (MQ=255)

                                                                               aCCTTCCTCAACAACAAATATATAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTAGAACCCGTGTTATCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTcc                                                             >  2:680694/1‑141 (MQ=255)

                                                                                        aacaacAAAGATGTAATAAAAACACAGAAGCGATATTTCAACTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCTTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAgg                                                    <  2:138150/141‑1 (MQ=18)

                                                                                        aacaaTAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAgg                                                    <  1:94989/141‑1 (MQ=255)

                                                                                         acaaTAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGa                                                   <  2:920414/141‑1 (MQ=255)

                                                                                         acaaTAAATATGTAAGAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGa                                                   <  2:749629/141‑1 (MQ=255)

                                                                                              aaataTGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTCGa                                              <  2:306950/141‑1 (MQ=255)

                                                                                              aaataTGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTCAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTCGa                                              <  1:599010/141‑1 (MQ=255)

                                                                                               aataTGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTCCCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCAACAGGTAGGAccaaca                                             >  2:614388/1‑136 (MQ=255)

                                                                                               aataTGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTCGaa                                             >  2:809228/1‑141 (MQ=255)

                                                                                                  atGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTCGAACCt                                          >  1:800901/1‑141 (MQ=255)

                                                                                                   tGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGCGCCCGAACCCCCCAACCCAGAACCCACGCCCCCACAGGCAGGACCCGAAccca                                         >  2:391399/1‑139 (MQ=18)

                                                                                                   tGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTAGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGCCCAAGGAGCCATGGCTCCACAGGTAGGACTCGAACCTa                                         >  2:675695/1‑141 (MQ=255)

                                                                                                   tGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTACTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTCGAACCTa                                         >  2:909341/1‑141 (MQ=255)

                                                                                                       ataaAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGGCTCGCACCTACgcc                                     >  1:812720/1‑139 (MQ=255)

                                                                                                             aaaCAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTCGAACCTACGACCGATCg                               <  1:410408/141‑1 (MQ=255)

                                                                                                             aaaCAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCCGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTCGAACCTACGACCGATCg                               <  1:344665/141‑1 (MQ=255)

                                                                                                              aaCAGACGCGTTATTTCACTTCTGCTGGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACACCTAGATCTCGAACCTACGACCGATCgg                              <  2:706255/141‑1 (MQ=14)

                                                                                                               aaaGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCAACCCAGGTAGGACTCGAACCTACGTCCGATCgtt                             >  2:436008/3‑139 (MQ=17)

                                                                                                               aCAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCCCTTGCCACATGATCTATGGCTCCACAGGTAGGACTCGAACCTACGACCGATCGGt                             >  1:819153/1‑141 (MQ=17)

                                                                                                                 aGACGCGAGATTTCACTTCTGCTTGTATGACCCCTACGGGACTCGAACCCGGGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTCGAACCTACGACCGATCGGTTa                           <  1:285449/141‑1 (MQ=255)

                                                                                                                 aGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTCGAACCTACGACCGATCGGTTa                           <  1:826089/141‑1 (MQ=255)

                                                                                                                 aGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTCGAACCTACGACCGATCGGTTa                           >  2:398301/1‑141 (MQ=255)

                                                                                                                 aGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGGGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTCGAACCTACGACCGATCGGTTa                           <  2:327799/141‑1 (MQ=255)

                                                                                                                 aGAAGCGACTTTTCCCTACTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTCGAACCTACGACCGATCGGTTa                           <  2:664642/141‑1 (MQ=255)

                                                                                                                   aaGCGAGATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTCGAACCTACGACCGATCGGTTAAc                         <  1:133436/141‑1 (MQ=255)

                                                                                                                        atatTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTCGAACCTACGACCGATCGGTTAAAAGcag                    >  2:738657/1‑139 (MQ=255)

                                                                                                                         tatTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTATTACCGCCGTGAATGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTCGATCCTACGACCGATCGGTTAACAGCCGa                   >  1:603372/1‑141 (MQ=255)

                                                                                                                            ttCCCTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGCGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTCGAACCTACGACCGATCGGTGCACAGCCGATac                >  1:714500/1‑140 (MQ=255)

                                                                                                                             tCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTCGAACCTCCGACCGATCGGTTAACAGCCGATTGc               >  1:6500/1‑141 (MQ=255)

                                                                                                                                cTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTCGAACCTACGACCGATCGGTTAACAGCTGATAGctct            <  2:893889/141‑1 (MQ=38)

                                                                                                                                cTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTCGAACCTACGACCGATCGGTTAACAGCCGATAGctct            <  2:423169/141‑1 (MQ=38)

                                                                                                                                cTTCTGCTTGTACGACTCCTACGGGACCCGACCCCGTGTTACCACCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTCGAACCTACGACCGATCGGTTAACAGCCGATAGctct            <  1:333788/141‑1 (MQ=255)

                                                                                                                                 ttCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTCGAACCTACGACCGATCGGTTAACAGCCGATAGCTCTa           >  2:130959/1‑141 (MQ=38)

                                                                                                                                   cTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTCGAACCTACGACCGATCGGTTAACAGCCGATAGCTCTAcc         >  1:949350/1‑141 (MQ=35)

                                                                                                                                        tGTATGCCTCCTCCGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTCGAACCTACGACCGATCGGTTAACAGCCGATAGCTCTACCACTGa    <  1:59598/141‑1 (MQ=17)

                                                                                                                                        tGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGAGAAAGGGGGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTCGAACCTACGACCGATCGGTTAACAGCCGATAGCTCTACCCCTGa    >  1:193277/1‑141 (MQ=12)

                                                                                                                                        tGTATGACTCCTACGGGACGCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTCGAACCTACGCCCGATCGGTTAACAGCCGATAGCTCTGCCACttg    >  1:72758/1‑139 (MQ=12)

                                                                                                                                        tGTATGACTCCTACGGAACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTCGAACCTACGACCGATCGGTTAACAGCCGCTAGCTCTACCACTGa    >  1:554918/1‑141 (MQ=17)

                                                                                                                                          tATGACTCCTACGGGACTCGCACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACCGGCAGGCCCCGCACCTACGACCGCTCGGTTAGCAGACGTTGGCTCTACCACTGacc  >  2:646127/1‑139 (MQ=11)

AAGGTAAGGGATTCGAACCCTTGAGACGCTTGTGACGCCTACACACTTTCCAGGCGTGCTCCTTCGGCCAGCTCGGACAACCTTCCTCAACAATAAATATGTAATAAAAAAACAGAAGCGATATTTCACTTCTGCTTGTATGACTCCTACGGGACTCGAACCCGTGTTACCGCCGTGAAAGGGCGGTGTCTTAACCGCTTGACCAAGGAGCCATGGCTCCACAGGTAGGACTCGAACCTACGACCGATCGGTTAACAGCCGATAGCTCTACCACTGAGC  >  USA300TCH1516_ALE/1961372‑1961650

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 8 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.