New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_012417 = 15751589 (0.830)5 (0.000) 5/268 71.5 0.33% intergenic (‑381/‑4) USA300HOU_RS15665/USA300HOU_RS14895 hypothetical protein/hypothetical protein
?NC_012417 = 1586 1515 (0.830)coding (8/189 nt) USA300HOU_RS14895 hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 1612 total aligned reads displayed.

GTATATATTTTTAAGTTAAAAACCTATATGATACCCCCTAAACCTTTAAAATACCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAATTTTTATATCTCATTTGGAAAATTTATATATATTAATTCCGTATGTTATTTTGATGGGAATAAATGCTATTT  >  NC_012417/1446‑1726
                                                                                                                                            |                                                                                                                                             
gTATATATTTGTAAGTTAAAAACCTATATGATACCCCCTAAACCGTTAAAATACCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGTTAAAAAAAAAAAAAAAAGGAGTGTTTATTTTGAATaa                                                                                                                                               <  2:714671/141‑1 (MQ=255)
 tatataTTTTTAAGTTAAAAACCTATATGATACCCCCTAAACCTTTAAAATACCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATaaa                                                                                                                                              >  1:484436/1‑141 (MQ=255)
  atataaTTTTAAATTAAAAACCTATATGATACCCCCTAAACCTTTAAAATACCCCCTTAAAATTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATaaaa                                                                                                                                             <  2:198818/141‑1 (MQ=255)
    atatTTTTAAGTTAAAAACCTATATGATACCCCCTAAACCTTTAAAATACCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAac                                                                                                                                           <  2:181576/141‑1 (MQ=255)
    atatTTTTAAGTTAAAAACCTATATGATACCCCCTAAACCTTTAAAATACCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAac                                                                                                                                           <  1:299796/141‑1 (MQ=255)
      atTTTTAAGTTAAAAACCTATATGATACCCCCTAAACCTTTAAAATACCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAacac                                                                                                                                         >  1:773467/1‑141 (MQ=255)
       tttttAAGTTAAAAACCTATATGATACCCCCTAAACCTTTAAAATACCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAAcaca                                                                                                                                        <  1:138446/141‑1 (MQ=255)
         tttAAGTTAAAAACCTATATGATACCCCCTAAACCTTTAAAATACCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTTAATAAAAACACAgt                                                                                                                                      >  1:937355/1‑141 (MQ=255)
         tttAAGTTAAAAACCTATATGATACCCCCTAAACCTTTAAAATACCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTCAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACCCAgg                                                                                                                                      >  1:513900/1‑140 (MQ=255)
           tAAGTTAAAAACCTATATGATACCCCCTAAACCTTTAAAATACCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTTTTTATTTTGAATAAAAACACAgtgt                                                                                                                                    <  1:324186/141‑1 (MQ=255)
           tAAGTTAAAAACCTATATGATACCCCCTAAACCTTTAAAATACCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAgtgt                                                                                                                                    <  2:488072/141‑1 (MQ=255)
            aaGTTAAAAACCTATATGATACCCCCTAAACCTTTAAAATACCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGtt                                                                                                                                   >  2:573495/1‑141 (MQ=255)
             aGTTAAAAACCTATATGATACCCCCTAAACCTTTAAAATACCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTa                                                                                                                                  >  2:960039/1‑141 (MQ=255)
              gTTAAAAACCTATATGATACCCCATAAACCTTTAAAATACCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAg                                                                                                                                 <  2:222998/141‑1 (MQ=255)
                 aaaaaCCTGTCTTATACCCCCTAAACCTTTAAAATACCCGCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATg                                                                                                                              <  2:915135/141‑1 (MQ=255)
                 aaaaaCCTATATGATACCCCCTAAACCTTTAAAATACCCCCTTAAAACTCAAAACTGCGCCTGTCAGAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATg                                                                                                                              <  1:472636/141‑1 (MQ=255)
                 aaaaaCCTATATGATACCCCCTAAACCTTTAAAATACCCCCTTAAAACTAAAAATAAAGGAATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTATATTTTGAATAAGACCACAGGGTTAGATg                                                                                                                              >  2:355968/1‑141 (MQ=255)
                 aaaaaCAGATATGATACCCCCTAAACCTTTAAAATACCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTAATAAAAAAAAAAAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATg                                                                                                                              <  2:544162/141‑1 (MQ=255)
                  aaaaCCTATATGATACCCCCTAAACCTTTAAAATACCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGa                                                                                                                             >  2:900807/1‑141 (MQ=255)
                  aaaaCCTATATGATACCCCCTAAACCTTTAAAATACCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGa                                                                                                                             <  1:901302/141‑1 (MQ=255)
                   aatccTAGATGATCCCCGCTAAACCTTTAAAATACCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGaa                                                                                                                            <  2:808555/138‑1 (MQ=255)
                   aaaGCTATATGATACCCCCTAAACCTTTAACATACCCACTTAAAACTGAAAATAAAGGTATTTATAATTTGAGTAAGCCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGaa                                                                                                                            <  1:845852/141‑1 (MQ=255)
                   aaaCCTATATGATACCCCCTAAACCTTTAAAATACCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGaa                                                                                                                            <  1:827135/141‑1 (MQ=255)
                    aaCCTATATGATACCCCCTAAACCTTTAAAATACCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAg                                                                                                                           >  1:313267/1‑141 (MQ=255)
                        tataTGATACCCCCTAAACCTTTAAAATACCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAACGGAGTGTTTATTTTGAATAAAAACAAAGTGTTAGATGAAGGTTa                                                                                                                       >  2:508768/1‑141 (MQ=255)
                        tataTGATACCCCCTAAACCTTTAAAATACCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGATTATTTTGAATAAAAAAACAGTGTTAGATGAAGATTa                                                                                                                       >  1:232268/1‑141 (MQ=255)
                            tGATACCCCCTAAACCTTTAAAATACCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGtt                                                                                                                   <  1:500317/141‑1 (MQ=255)
                                aCCCCCTAAACCTTTAAAATACCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAg                                                                                                               <  1:156162/141‑1 (MQ=255)
                                  ccccAAAACCTTTAAAATACCCCCTTAAAACTCAAAATAAAGGTATATATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTAGTTTGAATAAAAACACAGTGTTAGATGAATGTTACGTTATAGCa                                                                                                             >  1:700614/1‑141 (MQ=255)
                                   cccTAAACCTTTAAAATACCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGGAAGTCTTGTGATAAAGTTTTTTAAAAAGGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCaa                                                                                                            >  1:81076/1‑141 (MQ=255)
                                     cgaaaTCTTAAAAATACTACCTAAAAACTTAAAATGAAGGTATTTATAATTTGAGTAAGTCTTGTGAAAAAGTTTTTTAAAAAAGGAGTTTAAAAAAAAAAAAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACt                                                                                                          <  2:133576/139‑1 (MQ=255)
                                     cTAAACCTTTAAAATACCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGCACGTGTTGAGGTAAAGTTTTTTAAAAAAGTAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACt                                                                                                          >  1:196942/1‑141 (MQ=255)
                                      tAAACCTTTAAAATACCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTa                                                                                                         >  1:289907/1‑141 (MQ=255)
                                      tAAACCTTTAAAATACCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTa                                                                                                         >  2:655108/1‑141 (MQ=255)
                                      tAAACCTTTAAAATACCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGAAACTa                                                                                                         >  1:613089/1‑141 (MQ=255)
                                       aaaCCTTTAAAATACCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTAt                                                                                                        >  1:988730/1‑141 (MQ=255)
                                       aaaCCTTTAAAATACCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGCGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTAt                                                                                                        >  1:345541/1‑141 (MQ=255)
                                        aaCCTTTAAAATACCCCCTTAAAACTCAAAATAAAGATATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGCGATTATTTTGAATAAAAACACAGTGTTATATGACGGATACGTTATAGCAACAAtt                                                                                                       >  2:434631/1‑141 (MQ=255)
                                        aaCCGTTAAAATACCCCCTGAAAACTCAAAATAAAGGTATTTATAAGTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTAtt                                                                                                       <  1:378240/141‑1 (MQ=255)
                                              tAAAATACCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACTGTGTTAGATGAAGGTTACGTTATAGCAACTATATTAAAt                                                                                                 >  2:118029/1‑141 (MQ=255)
                                               aaaaTACCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATg                                                                                                <  1:362180/141‑1 (MQ=255)
                                               aaaaTACCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATg                                                                                                <  2:934516/141‑1 (MQ=255)
                                                    ttccccTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTc                                                                                           <  2:606162/139‑1 (MQ=255)
                                                     cccccTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCt                                                                                          >  2:82108/1‑141 (MQ=255)
                                                     cccccTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTAATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTACt                                                                                          >  1:886528/1‑141 (MQ=255)
                                                        ccTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCttt‑t                                                                                      <  1:453679/141‑1 (MQ=255)
                                                        ccTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCttt‑t                                                                                      >  1:92350/1‑141 (MQ=255)
                                                          ttAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTa                                                                                    <  2:559267/141‑1 (MQ=255)
                                                          ttAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAACTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAAGACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCCTT‑TTa                                                                                    >  2:733699/1‑141 (MQ=255)
                                                           tAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAATTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTAc                                                                                   <  2:10007/141‑1 (MQ=255)
                                                              aaCTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTg                                                                                <  1:960039/141‑1 (MQ=255)
                                                               aCTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTgg                                                                               <  1:215549/141‑1 (MQ=255)
                                                               aCTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTgg                                                                               >  1:631559/1‑141 (MQ=255)
                                                                cTCAAAATAAAGGTATTTATAATTTGAGTAATTCTTGTGAAAAAAAAAAAAAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGa                                                                              <  2:880128/141‑1 (MQ=255)
                                                                cTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGa                                                                              <  1:57743/141‑1 (MQ=255)
                                                                       tAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTA‑TTACTTGGATTAAttt                                                                       <  1:592573/141‑1 (MQ=255)
                                                                        aaaGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAAtttt                                                                      <  2:866649/141‑1 (MQ=255)
                                                                          aGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAACAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAATTTTta                                                                    >  1:435698/1‑141 (MQ=255)
                                                                           ggTTTTTATAATTTGAGTAAGTCTTGTGATAAAGATTTATAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAATTTTtat                                                                   <  2:397385/141‑1 (MQ=255)
                                                                            gTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTTTTTTTTTTTTGTTTAATTTGAATAAAAACACAGTGTAAGATGTAGGTTATGTTATAGCAACTTTTTTAAATGTTTTCTTT‑TTACTTGGATTTATTTTtatt                                                                  >  2:768815/1‑140 (MQ=255)
                                                                            gTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAATTTTtata                                                                  >  1:54061/1‑141 (MQ=255)
                                                                               tttATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTGGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAATTTTTATAtct                                                               <  1:117197/141‑1 (MQ=255)
                                                                               tttATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAATTTTTATAtct                                                               <  1:555059/141‑1 (MQ=255)
                                                                               tttATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTATTCTCT‑TTACTTGGATTAATCTTTATAtct                                                               <  1:731099/141‑1 (MQ=255)
                                                                                ttATAATTTGAGTAATTCTTGTGAAAAAATAATAAAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAATTTTTATAtctc                                                              <  2:590811/141‑1 (MQ=255)
                                                                                ttATAATATGAGTGAGTCGTGTGATAAAGTTTTTTAAAAAAGGAGTGGTTTTTTAGAATAAATACACTGAGTTTGATGAAAGTTACGTTATAGCAACTATTTT‑AATGGTTTCTTTATTACGTGGAGCAATTTTTatataaa                                                              <  2:471931/141‑4 (MQ=255)
                                                                                    aaTTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAATTTTTATATCTCAttt                                                          <  2:532071/141‑1 (MQ=255)
                                                                                     aTTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAATTTTTATATCTCATTTg                                                         <  1:662936/141‑1 (MQ=255)
                                                                                      tttGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAATTTTTATATCTCATTTgg                                                        <  1:745085/141‑1 (MQ=255)
                                                                                        tGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAATAGTTTTTATTTTTAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTTGATTAATTTTTATATCTCATTTGGaa                                                      >  2:749246/1‑141 (MQ=255)
                                                                                            tAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAATTTTTATATCTCATTTCGAAAAtt                                                  >  2:948203/1‑141 (MQ=255)
                                                                                              aGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAATTTTTATATCTCATTTGGAAAATTta                                                <  2:296716/141‑1 (MQ=255)
                                                                                              aGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAATTTTTATATCTCATTTGGAAAATTta                                                >  2:283809/1‑141 (MQ=255)
                                                                                              aGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAATTTTTATATCTCATTTGGAAAATTta                                                >  2:266571/1‑141 (MQ=255)
                                                                                               gTCGTGTGATAAAGTTTTTTAAAAAAGGAGTTTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAATTTTTATATCTCATTTGGAAAATTtat                                               <  1:976175/141‑1 (MQ=255)
                                                                                                 cgtgtgATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAATTTTTATATCTCATTTGGAAAATTtatat                                             >  2:667912/3‑141 (MQ=255)
                                                                                                  ttGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAATTTTTATATCTCATTTGGAAAATTtatatt                                            >  2:69569/1‑140 (MQ=255)
                                                                                                    tgtaTAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATCAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAATTTTTATATCTCATTTGGAAAATTtatatata                                          <  2:97792/138‑1 (MQ=255)
                                                                                                    tgaaTAAAGTTATTTAAAAAAGGAGTGTTTAGTTTGAATCAAAACACAGGGTTACATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAATTTTTATATCTCATTTGGAAAATTtatatata                                          <  2:424350/138‑1 (MQ=255)
                                                                                                         aaaGTTTTTTAAAAAAGGAGTGTTGATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAATTTTTATATCTCATTTGGAAAATTTATATATATTAAt                                     <  2:248227/141‑1 (MQ=255)
                                                                                                           aGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTCCTTTTTATATCTCATTTGGAAAATTTATTTATATTAATTc                                   >  1:271558/1‑141 (MQ=255)
                                                                                                           aGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAATTTTTATATCTCATTTGGAAAATTTATATATATTAATTc                                   <  2:313267/141‑1 (MQ=255)
                                                                                                           aGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAATTTTTATATCTCATTTGGAAAATTTATATATATTAATTc                                   >  1:420538/1‑141 (MQ=255)
                                                                                                               ttttAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGCTGATGGCTACGTTAGAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAATTTTTATATCTCATTTGGAAAATTTATATATATTAATTCCGtt                               >  2:453596/1‑140 (MQ=255)
                                                                                                                 ttAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAATTTTTATATCTCATTTGGAAAATTTATATATATTAATTCCGTAtt                             >  2:157180/1‑140 (MQ=255)
                                                                                                                  tAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAATTTTTATATCTCATTTGGAAAATTTATATATATTAATTCCGTATGt                            <  1:100245/141‑1 (MQ=255)
                                                                                                                  tAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAATTTTTATATCTCATTTGGAAAATTTATATATATTAATTCCGTATGt                            <  1:71786/141‑1 (MQ=255)
                                                                                                                     aaaaGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAATTTTTATATCTCATTTGGAAAATTTATATATATTAATTCCGTATGtttt                         >  2:635618/1‑139 (MQ=255)
                                                                                                                     aaaaGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAATTTTTATATCTCATTTGGAAAATTTATATATATTAATTCCGTATGTTAt                         >  1:872115/1‑141 (MQ=255)
                                                                                                                      aaaGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAATTTTTATATCTCATTTGGAAAATTTATATATATTAATTCCGTATGTTAtt                        >  1:859321/1‑141 (MQ=255)
                                                                                                                      aaaGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAATTTTTATATCTCATTTGGAAAATTTATATATATTAATTCCGTATGTTAtt                        >  1:68278/1‑141 (MQ=255)
                                                                                                                      aaaGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAATTTTTATATCTCATTTGGAAAATTTATATATATTAATTCCGTATGTTAtt                        <  1:397761/141‑1 (MQ=255)
                                                                                                                          gAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAATTTTTATATCTCATTTGGAAAATTTATATATATTAATTCCGTATGTTATTTTGa                    >  1:793004/1‑141 (MQ=255)
                                                                                                                             tgtTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAATTTTTATATCTCATTTGGAAAATTTATATATATTAATTCCGTATGTTATTTTGATgg                 <  2:344720/141‑1 (MQ=255)
                                                                                                                                  aTTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAATTTTTATATCTCATTTGGAAAATTTATATATATTAATTCCGTATGTTATTTTGATGGGAATa            <  2:376927/141‑1 (MQ=255)
                                                                                                                                  aTTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAATTTTTATATCTCATTTGGAAAATTTATATATATTAATTCCGTATGTTATTTTGATGGGAATa            >  1:175898/1‑141 (MQ=255)
                                                                                                                                     tgtaaTAAAAACTCAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAATTTTTATATCTCATTTGGAAAATTTATATATATTAATTCCGTATGTTATTTTGATGGGAATAAAt         <  2:842137/138‑1 (MQ=255)
                                                                                                                                      ttaaTAAAAACAAAGTGTTAGATGAAGGTTACCTTCTAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAATTTTTATATCTCATTTGGAAAATTTATATATATTAATTCCGTATGTTATTTTGATGGGAATAAATg        <  2:795023/139‑1 (MQ=255)
                                                                                                                                       gAATAAAAACATAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTAAAATGTTTTCTTT‑TTACTTGGATTAATTTTTATATCTCATTTGGAAAATTTATATATATTAATTCCGTATGTTATTTTGATGGGAATAAATGc       <  1:250970/141‑1 (MQ=255)
                                                                                                                                         aTAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCCACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAATTTTTATATCTCATTTGGAAAATTTATATATATTAATTCCGTATGTTATCTTGATGGGAATAAATGCta     <  1:648314/141‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                             
GTATATATTTTTAAGTTAAAAACCTATATGATACCCCCTAAACCTTTAAAATACCCCCTTAAAACTCAAAATAAAGGTATTTATAATTTGAGTAAGTCTTGTGATAAAGTTTTTTAAAAAAGGAGTGTTTATTTTGAATAAAAACACAGTGTTAGATGAAGGTTACGTTATAGCAACTATTTTAAATGTTTTCTTT‑TTACTTGGATTAATTTTTATATCTCATTTGGAAAATTTATATATATTAATTCCGTATGTTATTTTGATGGGAATAAATGCTATTT  >  NC_012417/1446‑1726

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.