| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2660581 | 90 (1.190) | 3 (0.040) | 3/236 | NT | 3.4% | intergenic (+23/+226) | ldhD_1/ybiV | D‑lactate dehydrogenase/Sugar phosphatase YbiV |
| ? | USA300TCH1516_ALE | = 2660590 | 91 (1.330) | intergenic (+32/+217) | ldhD_1/ybiV | D‑lactate dehydrogenase/Sugar phosphatase YbiV | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTAGTAACACCACATATTGCTTTCTTCTCTGATGAAGCAGTACAAAACCTTGTTGAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTAAAAGCAAAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2660439‑2660581‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagcaaaggcACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTGTACTGCTTCATCAGAGAAGAAAGCAATA < USA300TCH1516_ALE/2660590‑2660453 TTAGTAACACCACATACTGCTTTCTTCTCTGATGAAGCAATACAAAACCTTGTCGAAGGTGGTTTAAACGCCGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTAAAAGCAAAG < 1:243675/141‑1 AGTAACACCACATATTGCTTTCTTCTCTGATGAAGCAGTACAAAACCTTGTTGAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACAGGTACATGTGAAACACGTTTAAATTAATATATATATTTAAAAGCAAAGGC < 1:604212/141‑1 TGCTTTCTTCTCTGATGAAGCAGTACAAAACCTTGTTGAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGTAACACTTTTAAATTAATATATATATTTAAAAGCAAAGGCACATGGCGCGCCTTT < 1:172629/141‑1 TAAATTAATATATATATTTAAAAGCAAAGGCGCGCCATGTGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTG > 2:4951/1‑141 ATATATTTAAAAGCAAAGGCGCGCCATGTGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTGTACTGCTTCAT < 1:4951/141‑1 AAAAGCAAAGGCACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTGCCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTGTACTGCTTCATCAGAGAAG > 1:246221/1‑141 AAAAGCAAAGGCACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACGGATAATGCTGCGTTTAAACCACCTTCAACCAGGTTTTGTACTGCTTCATCAGAGAAa > 1:350772/1‑140 AAAAGCAAAGGCACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTGTACTGCTTCATCCGAGAca > 2:445826/1‑139 AAAAGCAAAGGCACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTGTACTGCTTCATCCGAGAAG > 2:574098/1‑141 AAAAGCAAAGGCACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTGTACTGCTTCATCAGAGAAG > 1:693246/1‑141 AAAAGCAAAGGCACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTGTACTGCTTCATCAGAGAAG > 2:687373/1‑141 AAAAGCAAAGGCACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTCCAACAAGGTGTTGAACTGCCTGATCAGGGAAG > 1:188199/1‑141 GCAAAGGCACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTAAACAAGGTTTTGTACTGCTTCATCAGAGAAGAAAG > 1:248050/1‑141 CAAAGGCACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTGTACTGCTTCATCAGAGAAGAAAGC < 1:807682/141‑1 CAAAGGCACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTGTACTGCTTCATCAGAGAAGAAAGC > 2:53657/1‑141 AAGGCACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTGTACTGCTTCATCAGAGAAGAAAGCAA < 1:94199/141‑1 AGGCACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTGTACTGCTTCATCAGAGAAGAAAGCAAT < 2:540779/141‑1 GGCACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTGTACTGCTTCATCAGAGAAGAAAGCAATt > 2:735040/1‑140 TTAGTAACACCACATATTGCTTTCTTCTCTGATGAAGCAGTACAAAACCTTGTTGAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTAAAAGCAAAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2660439‑2660581‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagcaaaggcACATGGCGCGCCTTTGCTTTTAAATATATATATTAATTTAAACGTGTTTCACATGTACCAGTGTTAATGACAGATAATGCTGCGTTTAAACCACCTTCAACAAGGTTTTGTACTGCTTCATCAGAGAAGAAAGCAATA < USA300TCH1516_ALE/2660590‑2660453 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |