| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 291054 = | 106 (1.230) | 4 (0.050) | 4/284 | 7.1 | 3.6% | coding (719/1260 nt) | gatC_1 | PTS system galactitol‑specific EIIC component |
| ? | USA300TCH1516_ALE | 291069 = | 111 (1.340) | coding (734/1260 nt) | gatC_1 | PTS system galactitol‑specific EIIC component | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CACGTTCGCCAAAACGTTTATTTAGCCATGTTCTTGCAGACTCTGAAACTGGCATTAAACCTTCCATTAAGATTTTTACCATTCTAGGCATTAATACCATTACTGCAGCCATTGACATTCCTAAATTAATGATGTCTCCAGGTTTGTAACCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/291206‑291054‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacctgGAGACATCATTAATTTAGGAATGTCAATGGCTGCAGTAATGGTATTAATGCCTAGAATGGTAAAAATCTTAATGGAAGGTTTAATGCCAGTTTCAGAGTCTGCAAGAACATGGCTAAATAAACGTTTTGGCGAACGTGAAATTTAT > USA300TCH1516_ALE/291069‑291214 CACGTTCGCCAAAACGTTTATTTAGCAATGTTCTTGCAGACTCTGAAACTGGCATTAAACCTTCCATTAAGATTTTTACCATTCTAGGCATTAATACCATTACTGCAGCCATTGACATTCCTAAATTAATGATGTCTCCAGGTTTGTAA > 1:646894/1‑149CACGTTCGCCAAAACGTTTATTGAGCCATGTTCTTGCAGACTCTGAAACTGGGATTAAACCTTCCATTAAGATTTTTACCATTCTAGGCATTAATACCATTACTGCAGCCATTGACATTCCTAAATTAATGATGTCTCCAGGTTTGTAA > 1:507769/1‑149 CGTTCGCCAAAACGTTTATTTAGCCATGTTCTTGCAGACTCTGAAACTGGCATTAAACCTTCCATTAAGATTTTTACCATTCTAGGCATTAATACCATTACTGCAGCCATTTACATTCCTAAATTAATGATGTCGCCAAGTTTGTAACC > 2:385782/1‑149 TTCGCCAAAACGTTTATTTAGCCATGTTCTTGCAGACTCTGAAACTGGCATTAAACCTTCCATTAAGATTTTTACCATTCTAGGCATTAATACCATTACTGCAGCCATTGACATTCCTAAATTAATGATGTCTCCAGGTTTGTAACCTG < 2:620026/149‑1 TTCGCCAAAACGTTTATTTAGCCATGTTCTTGCAGACTCTGAAACTGGCATTAAACCTTCCATTAAGATTTTTACCATTCTAGGCATTAATACCATTACTGCAGCCATTGACATTCCTAAATTAATGATGTCTCCAGGTTTGTAACCTG < 2:17902/149‑1 CTGAAACTGGCATTAAACCTTCCATTAAGATTTTTACCATTCTAGGCATTAATACCATTACTGCAGCCATTGACATTCCTAAATTAATGATGTCTCCAGGTTTGTAACCTGGAGACATCATTAATTTAGGAATGTCAATGGCTGCAGTA > 1:698776/1‑149 TAGGCATTAATACCATTACTGCAGCCATTGACATTCCTAAATTAATGATGTCTCCAGGTTTGTAACCTGGAGACATCATTAATTTAGGAATGTCAATGGCTGCAGTAATGGTATTAATGCCTAGAATGGTAAAAATCTTAATGGAAGGT > 1:548464/1‑149 TACTGCAGCCATTGACATTCCTAAATTAATGATGTCTCCAGGTTTGTAACCTGGAGACATCATTAATTTAGGAATGTCAATGGCTGCAGTAATGGTATTAATGCCTAGAATGGTAAAAATCTTAATGGAAGGTTTAATGCCAGTTTCAG < 2:698776/149‑1 TGATGTCTCCAGGTTTGTAACCTGGAGACATCATTAATTTAGGAATGTCAATGGCTGCAGTAATGGTATTAATGCCTAGAATGGTAAAAATCTTAATGGAAGGTTTAATGCCAGTTTCAGAGTCTGCAAGAACATGGCTAAATAAACGT < 2:548464/149‑1 acatccaGGAGACATCATTAATTTAGGAATGTCAATGGCTGCAGTAATGGTATTAATGCCTAGAATGGTAAAAATCTTAATGGAAGGTTTAATGCCAGTTTCAGAGTCTGCAAGAACATGGCTAAATAAACGTTTTGGCGAACGTGAAA < 1:207190/142‑1 AACCTGGAGACATCATTAATTTAGGAATGTCAATGGCTGCAGTAATGGTATTAATGCCTAGAATGGTAAAAATCTTAATGGAAGGTTTAATGCCAGTTTCAGAGTCTGCAAGAACATGGCTAAATAAACGTTTTGGCGAACGTGAAATT < 1:802761/149‑1 AACCTGGAGACATCATTAATTTACGACTGGCGCGGGCTGCAGTAATGGTATTAATGCCTAGAATGGTAAAAATCTTAATGGAAGGTTTAATGACAGTTTCAGAGTCTGCAAGAACAGTGCTAACTAAACGTTTTGGCGAAAGTGAAATT > 2:902413/1‑149 ACCTGGAGACATCATTAATTTAGGAATGTCAATGGCTGCAGTAATGGTATTAATGCCTAGAATGGTAAAAATCTTAATGGAAGGTTTAATGCCAGTTTCAGAGTCTGCAAGAACATGGCTAAATAAACGTTTTGGCGAACGTGAAATTT < 1:634670/149‑1 CCTGGAGACATCATTAATTTAGGAATGTCAATGGCTGCAGTAATGGTATTAATGCCTAGAATGGTAAAAATCTTAATGGAAGGTTTAATGCCAGTTTCAGAGTCTGCAAGAACATGGCTAAATAAACGTTTTGGCGAACGTGAAATTTA > 1:664624/1‑149 CCTGGAGACATCATTAATTTAGGAATGTCAATGGCTGCAGTAATGGTATTAATGCCTAGAATGGTAAAAATCTTAATGGAAGGTTTAATGCCAGTTTCAGAGTCTGCAAGAACATGGCTAAATAAACGTTTTGGCGAACGTGAAATTTA > 1:324232/1‑149 CCTGGAGACATCATTAATTTAGGAATGTCAATGGCTGCAGTAATGGTATTAATGCCTAGAATGGTAAAAATCTTAATGGAAGGTTTAATGCCAGTTTCAGAGTCTGCAAGAACATGGCTAAATAAACGTTTTGGCGAACGTGAAATTTA > 1:136868/1‑149 CTGGAGACATCATTAATTTAGGAATGTCAATGGCTGCAGTAATGGTATTAATGCCTAGAATGGTAAAAATCTTAATGGAAGGTTTAATGCCAGTTTCAGAGTCTGCAAGAACATGGCTAAATAAACGTTTTGGCGAACGTGAAATTTAT > 1:769592/1‑149 CACGTTCGCCAAAACGTTTATTTAGCCATGTTCTTGCAGACTCTGAAACTGGCATTAAACCTTCCATTAAGATTTTTACCATTCTAGGCATTAATACCATTACTGCAGCCATTGACATTCCTAAATTAATGATGTCTCCAGGTTTGTAACCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/291206‑291054‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacctgGAGACATCATTAATTTAGGAATGTCAATGGCTGCAGTAATGGTATTAATGCCTAGAATGGTAAAAATCTTAATGGAAGGTTTAATGCCAGTTTCAGAGTCTGCAAGAACATGGCTAAATAAACGTTTTGGCGAACGTGAAATTTAT > USA300TCH1516_ALE/291069‑291214 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |