| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 622825 | 72 (0.830) | 3 (0.040) | 3/278 | 7.6 | 4.2% | coding (3388/3465 nt) | sdrE | Serine‑aspartate repeat‑containing protein E |
| ? | USA300TCH1516_ALE | = 622828 | 70 (0.860) | coding (3391/3465 nt) | sdrE | Serine‑aspartate repeat‑containing protein E | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GATAGCGACTCAGACTCAGACAGTGATTCAGACAGCGATTCAGACTCGGATGCAGGAAAACATACACCTGTTAAACCAATGAGTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/622669‑622825‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaataacgTTGCGTTATTTGAGCCGTTATTTTCACTACCTGTTTCTGGTAATGCTTTTGCTTTATTGTGATGGTCTTTAGTAGTACTCATTGGTTTAACAGGTGTATGTTTTCCTGCATCCGAGTCTGAATCGCTGTCTGAATCACTGTCTGAGTC < USA300TCH1516_ALE/622828‑622681 GATAGCGACTCAGACTCAGACAGTCATTCAGACAGCGATTCAGACTCGGATGCAGGAAAACATACACCTGTTAAACCAATGAGTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACCGGTAGTGAAAATAACGGCTC > 1:459835/1‑149 ATAGCGACTCAGACTCAGACAGTGATTCAGACAGCGATTCAGACTCGGATGCAGGAAAACATACACCTGTTGAACCAATGAGTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAATGAAAATAACGGCTCA > 2:759741/1‑149 ATAGCGACTCAGACTCAGACAGTGATTCAGACAGCGATTCAGACTCGGATGCAGGAAAACATACACCTGTTAAACCAATGAGTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCA > 1:126367/1‑149 TAGCGACTCAGACTCAGACAGTGATTCAGACAGCGATTCAGACTCGGATGCAGGAAAACATACACCTGTTAAACCAATGAGTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAA < 2:236842/149‑1 CGACTCAGACTCAGACAGTGATTCAGACAGCGATTCAGACTCGGATGCAGGAAAACATACACCTGTTAAACCAATGAGTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATA > 1:185898/1‑149 GACTCAGACTCAGACAGTGATTCAGACAGCGATTCAGACTCGGATGCAGGAAAACATACACCTGTTAAACCAATGAGTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAA < 2:703034/149‑1 CTCAGGTTCAGACAGTGATTCAGACAGCGAGTCAGACTCGGATGCAGGAAAACATACACCTGTTAGACCAATGAGTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACG < 2:408107/149‑1 GCAGGAAAACATACACCTGTTAAACCAATGAGTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGTTGCGTTATTTGAGCCGTTATTTTCACTACCTGTTTCTGGTAA < 1:24365/149‑1 AATGAGTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGTTGCGTTATTTGAGCCGTTATTTTCACTACCTGTTTCTGGTAATGCTTTTGCTTTATTGTGATGGTCTT > 2:51150/1‑149 AAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGTTGCGTTATTTGAGCCGTTATTTTCACTACCTGTTTCTGGTAATGCTTTTGCTTTATTGTGATGGTCTTTAGTAGTACTCATT < 1:51150/149‑1 CAAATAACGTTGCGTTATTTGAGCCGTTATTTTCACTACCTGTTTCTGGTAATGCTTTTGCTTTATTGTGATGGTCTTTAGTAGTACTCATTGGTTTAACAGGTGTATGTTTTCCTGCATCCGAGTCTGAATCGCTGTCTGAATCCCTG > 2:107618/1‑149 TAACGTTGCGTTATTTGAGCCGTTATTTTCACTACCTGTTTCTGGTAATGCTTTTGCTTTATTGTGATGGTCTTTAGTAGTACTCATTGGTTTAACAGGTGTATGTTTTCCTGCATCCGAGTCTGAATCGCTGTCTGAATCACTGTCTG > 2:298064/1‑149 ACGTTGCGTTATTTGAGCCGTTATTTTCACTACCTGTTTCTGGTAATGCTTTTGCTTTATTGTGATGGTCTTTAGTAGTACTCATTGGTTTAACAGGTGTATGTTTTCCTGCATCCGAGTCTGAATCGCTGTCTGAATCCCTGTCTGAG > 2:497698/1‑149 ACGTTGCGTTATTTGAGCCGTTATTTTCACTACCTGTTTCTGGTAATGCTTTTGCTTTATTGTGATGGTCTTTAGTAGTACTCATTGGTTTAACAGGTGTATGTTTTCCTGCATCCGAGTCTGAATCGCTGTCTGAATCACTGTCTGAG < 1:77368/149‑1 ACGTTGCGTTATTTGAGCCGTTATTTTCACTACCTGTTTCTGGTAATGCTTTTGCTTTATTGTGATGGTCTTTAGTAGTACTCATTGGTTTAACAGGTGTATGTTTTCCTGCATCCGAGTCTGAATCGCTGTCTGAATCACTGTCTGAG > 2:864793/1‑149 CGTTGCGTTATTTGAGCCGTTATTTTCACTACCTGTTTCTGGTAATGCTTTTGCTTTATTGTGATGGTCTTTAGTAGTACTCATTGGTTTAACAGGTGTATGTTTTCCTGCATCCGAGTCTGAATGGCTGTCTGATTCACTGTCTGAGT > 1:784981/1‑149 GTTGCGTTATTTGAGCCGTTATTTTCACTACCTGTTTCTGGTAATGCTTTTGCTTTATTGTGATGGTCTTTAGTAGTACTCATTGGTTTAACAGGTGTATGTTTTCCTGCATCCGAGTCTGAATCGCTGTCTGAATCACTGTCTGAGTC > 2:850513/1‑149 GATAGCGACTCAGACTCAGACAGTGATTCAGACAGCGATTCAGACTCGGATGCAGGAAAACATACACCTGTTAAACCAATGAGTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/622669‑622825‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaataacgTTGCGTTATTTGAGCCGTTATTTTCACTACCTGTTTCTGGTAATGCTTTTGCTTTATTGTGATGGTCTTTAGTAGTACTCATTGGTTTAACAGGTGTATGTTTTCCTGCATCCGAGTCTGAATCGCTGTCTGAATCACTGTCTGAGTC < USA300TCH1516_ALE/622828‑622681 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |