New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 622825	72 (0.830)	3 (0.040)	3/278	7.6	4.2%	coding (3388/3465 nt)	sdrE	Serine‑aspartate repeat‑containing protein E
	?	USA300TCH1516_ALE	= 622828	70 (0.860)					coding (3391/3465 nt)	sdrE	Serine‑aspartate repeat‑containing protein E
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTCAGACTCAGACAGTGATTCAGACAGCGATTCAGACTCGGATGCAGGAAAACATACACCTGTTAAACCAATGAGTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTATTCGGTCGTCGCAAAAAACAAAACAAATAATACAATATGACCCAGGTCCTTGTGGCCTGGTTTTTTTATAATTACACATGCAATAGATGTATTTTTCATAT  >  USA300TCH1516_ALE/622677‑622973                                                                                                                                                     |                                                                                                                                                     ctcaggttcagaCAGTGATTCAGACAGCGAGTCAGACTCGGATGCAGGAAAACATACACCTGTTAGACCAATGAGTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACg                                                                                                                                                      <  2:408107/149‑1 (MQ=255)     gactcagacAGTGATTCAGACAGCGATTCAGACTCGGATGCAGGAAAACATACACCTGTTAAACCAATGAGTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAAc                                                                                                                                                  <  2:850513/149‑1 (MQ=255)      actcagacAGTGAATCAGACAGCCATTCAGACTCGGATGCAGGAAAACATACACCTGTTAAACCAATGAGTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACg                                                                                                                                                 <  1:784981/149‑1 (MQ=255)       ctcagacAGTGATTCAGACAGCGATTCAGACTCGGATGCAGGAAAACATACACCTGTTAAACCAATGAGTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGt                                                                                                                                                >  1:77368/1‑149 (MQ=255)       ctcagacAGTGATTCAGACAGCGATTCAGACTCGGATGCAGGAAAACATACACCTGTTAAACCAATGAGTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGt                                                                                                                                                <  2:864793/149‑1 (MQ=255)       ctcagacAGGGATTCAGACAGCGATTCAGACTCGGATGCAGGAAAACATACACCTGTTAAACCAATGAGTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGt                                                                                                                                                <  2:497698/149‑1 (MQ=255)         cagacAGTGATTCAGACAGCGATTCAGACTCGGATGCAGGAAAACATACACCTGTTAAACCAATGAGTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTa                                                                                                                                              <  2:298064/149‑1 (MQ=255)             cAGGGATTCAGACAGCGATTCAGACTCGGATGCAGGAAAACATACACCTGTTAAACCAATGAGTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTtg                                                                                                                                          <  2:107618/149‑1 (MQ=255)                     ctgACATCGATTCAGACTCGGATGCAGGAAAACATACACCTGTTAAACCAATGAGTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGatta                                                                                                                                  <  1:909228/147‑1 (MQ=255)                      aGACAGCGATTCAGACTCGGATGCAGGAAAACATACACCTGTTAAACCAATGAGTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGattat                                                                                                                                 <  2:643912/149‑1 (MQ=255)                        aCATCGATTCAGACTCGGATGCAGGAAAACATACACCTGTTAAACCAATGAGTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGTCTCAAAGAACGCAACGTTATTTGGTGGATTAttt                                                                                                                               <  1:449961/149‑1 (MQ=255)                        aCAGCGATTCAGACTCGGATGCAGGAAAACATACACCTGTTAAACCAATGAGTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTAttt                                                                                                                               <  1:887432/149‑1 (MQ=255)                           gCGATTCAGACTCGGATGCAGTAAAACATACACCTGTTAAACCAATGAGTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTgca                                                                                                                            <  1:558995/149‑1 (MQ=255)                              aTTCAGACTCGGATGCAGGAAAACATACACCTGTTAAACCAATGAGTACCACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTgcagca                                                                                                                         <  1:33233/149‑1 (MQ=255)                              aTTCAGACGCGGATGCAGGAAAACATACACCTGTTAAACCAATGAGTACTACTAAATACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTgcagca                                                                                                                         <  1:175091/149‑1 (MQ=255)                               ttCAGACTCGGATGCAGGAAAACATACACCTGTTAAACCAATGAGTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCAt                                                                                                                        <  2:627038/149‑1 (MQ=255)                                    aCTCGGATGCAGGAAAACATACACCTGTTAAACCAATGAGTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGt                                                                                                                   >  1:901030/1‑149 (MQ=255)                                     cTCGGATGCAGGAAAACATACACCTGTTAAACCAATGAGTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGtt                                                                                                                  >  1:276956/1‑149 (MQ=255)                                        ggATGCAGGAAAACATACACCTGTTAAACCAATGAGTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCat                                                                                                               <  2:315729/149‑1 (MQ=255)                                        ggATGCAGGAAAACATACACCTGTTAAACCAATGAGTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCat                                                                                                               <  2:535603/149‑1 (MQ=255)                                                       tACACCTGTTAAACCAATGAGTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTTTTGTTATTCGgtc                                                                                                >  1:269219/1‑149 (MQ=255)                                                       tACACCTGTTAAACCAATGAGTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTATTCgggc                                                                                                >  1:187155/1‑147 (MQ=255)                                                           ccTGTTAACCCAATGAGTACTACTAAAGCCCACCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTTTTATTCGGtcgtcg                                                                                            <  2:180728/149‑1 (MQ=255)                                                                 aaaCCAATGAGTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTATTCGGTCGTCGCaaaaa                                                                                      <  2:591732/149‑1 (MQ=255)                                                                 aaaCCAATGAGGACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTATTCGGTCGTCGCaaaaa                                                                                      <  1:728594/149‑1 (MQ=255)                                                                 aaaCAAAGGAATACTACTACAGACCACCACAATAAAGCAAAACCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTATTCGGTCGTCGCaaaaa                                                                                      <  1:907376/149‑1 (MQ=14)                                                                   aCCAATGAGTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTATTCGGTCGTCGCaaaaaaa                                                                                    >  1:688314/1‑148 (MQ=255)                                                                   aCCAATGAGTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTATTCGGTCGTCGCAAaaaac                                                                                    <  1:919798/149‑1 (MQ=255)                                                                   aCCAATGAGTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTATTCGGTCGTCGCAAaaaac                                                                                    <  1:920082/149‑1 (MQ=255)                                                                    ccAATTAGTACTACTACAGAACATCAGAGTAAAGCTAAAGCATTACCATATACAGGTAGTGAAAATAGCGGCTCAAATAACTGAACGTGATTTGGTGTTTTAGTTGCAGCATTAGGTTCATTATTGTTATTCGGTCGTCGCAAaaaaca                                                                                   <  2:641348/149‑1 (MQ=14)                                                                      aaTGAGTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATACCGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTACGCTCCATATTGGTCTTAGGCCGCAGCAAaaaacaaa                                                                                 >  2:32307/1‑149 (MQ=14)                                                                      aaTGAGTACTACTAAAGACCATCACAATAAAAATTCCTCAGTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAAAGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTATTCGGTCGTGGCAAaaaacaaa                                                                                 >  1:222264/1‑149 (MQ=14)                                                                         gAGTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTATTCGGTCGTCGCAAAaaacaaaaca                                                                              <  1:306449/149‑1 (MQ=255)                                                                          actactaaCAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACTCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTATTCGGTCGTCGCAAAAaacaaaacaa                                                                             <  1:348550/147‑1 (MQ=255)                                                                          aGTACGACTAAATACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAAGACCGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCATCATTAGGTTCATTTTTGTTATTCGGTCGTCGCAAAAaacaaaacaa                                                                             <  1:598422/149‑1 (MQ=17)                                                                           gTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTATTCGGTCGTCGCAAAAGacaaaaaaaa                                                                            >  1:252614/1‑149 (MQ=255)                                                                             actactAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTATTCGGTCGTCGCAAAAAACAAAACAaata                                                                          >  2:626591/1‑149 (MQ=255)                                                                             actactAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGATGGATTATTTGCAGCATTAGGTTCATTATTGTTATTGGGTCGTCGCAAAAAAAAAACCAcatc                                                                          >  2:228736/1‑148 (MQ=14)                                                                                  taAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTATTCGGTCGTCGCAAAAAACAAAACAAATAATACa                                                                     >  1:313355/1‑149 (MQ=255)                                                                                  aaaaGACCATCAAAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTATTCGGTCGTTGCAAAAAACAAAACAAATAATACa                                                                     <  2:867629/148‑1 (MQ=255)                                                                                    aaGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTATTCGGTCGTCGCAAAAAACAAAACAAATAATACaaa                                                                   >  2:877207/1‑148 (MQ=255)                                                                                     aGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTATTCGGTCGTCGCAAAAAACAAAACAAAAAATACAata                                                                  >  2:117536/1‑149 (MQ=255)                                                                                          aacaaaaTAAAGCAACAGCATTACCAGAAACAGGGAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTATTCGATTGAACTATAGAACAAAACAAATAATACAATATGAcc                                                             <  2:200349/144‑1 (MQ=17)                                                                                                   aagcaaaagcaTTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTCGGTTCATTATTGGTAGTCGGTCGGCGCAAAAAACAAAAAAAATAATACAATATGACGCAGGTCCtt                                                    >  2:796842/1‑149 (MQ=17)                                                                                                            caTTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTATTCGGTCGTCGCAAAAAACAAAACAAATAATACAATATGACCCAGGTCCTTGTGGCCTgg                                           <  1:845277/149‑1 (MQ=255)                                                                                                            caTTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATAATTAACAGTATTAGGTTCATTATTGTTATTCGGTCGTCGCAAAAAACAAAACAAATAATACAATATGACCCAGGTCCTTGTGGCCttg                                           <  1:918151/149‑3 (MQ=255)                                                                                                              ttACCAGAAACAGGTAGTGAAAATAATGGCTCAAATATCGCAAAGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTATTCGGTCGTCGCAAAAAACAAAACAAATAATACAATATGACCCAGGTCCTTGTGGCCTGGtt                                         <  1:121739/149‑1 (MQ=255)                                                                                                              ttACCAGAAACAGGTAGTGAAAATAACGGCTCAACTACAGCAACGTTATGTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTATTCGGTCGTCGCAAAAAAGAAAACAAATAATACAATATGACCCAGGTCCTTGTGGCCTGGtt                                         <  2:193406/149‑1 (MQ=21)                                                                                                              ttACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTATTCGGTCGTCGCAAAAAACAAAACAAATAATACAATATGACCCAGGTCCTTGTGGCCTGGtt                                         <  1:306263/149‑1 (MQ=255)                                                                                                              ttACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTCCATTATTGTTATTCGGTCGTCGCAAAAAACAAAACAAATAATACAATATGACCCAGGTCCTTGTGGCCTGGtt                                         <  1:701998/149‑1 (MQ=255)                                                                                                                  cAGAACTAGGGAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTCGATCATTTGCAGCATTAGGTTCATTATTGTTATTCGGTCGTCGCAAAAAACAAAACAAATAATACAATATGACCCAGGTCCTTGTGGCCTGGtttttt                                     <  2:51058/149‑1 (MQ=21)                                                                                                                  cAGAAACAGGTAGTGAAAATGACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTATTCGGTCGTCGCAAAAAACAAAACAAATAATACAATATGACCCAGGTCCTTGTGGCCTGGtttttt                                     <  2:920739/149‑1 (MQ=255)                                                                                                                  cAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTATTCGGTCGTCGCAAAAAACAAAACAAATAATACAATATGACCCAGGTCCTTGTGGCCTGGtttttt                                     <  1:492148/149‑1 (MQ=255)                                                                                                                  cAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTATTCGGTCGTCGCAAAAAACAAAACAAATAATACAATATGACCCAGGTCCTTGTGGCCTGGtttttt                                     <  2:816065/149‑1 (MQ=255)                                                                                                                  cAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTATTCGGTCGTCGCAAAAAACAAAACAAATAATACAATATGACCCAGGTCCTTGTGGCCTGGtttttt                                     <  2:347630/149‑1 (MQ=255)                                                                                                                  cAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTATTCGGTCGTCGCAAAAAACAAAACAAATAATACAATATGACCCAGGTACTTGTGACCTGGtttttt                                     >  2:564306/1‑149 (MQ=255)                                                                                                                     aaaCAGGTAGTGTAAATAACGGCTCAAATAACGCAACGCTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTATTCGGTCGTCGCAAAAAACAAAACAAATAATACAATATGACCCAGGTCCTTGTGGCCTGGTTTTTTtaa                                  >  2:566288/1‑148 (MQ=255)                                                                                                                     aaaCAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTATTCGGTCGTCGCAAAAAACAAAACAAATAATACAATATGACCCAGGTCCTTGTGGCCTGGTTTTTTtat                                  >  2:380579/1‑149 (MQ=255)                                                                                                                       aCAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTATTCGGTCGTCGCAAAACACACAACAAATAATACAATATGACCCAGGTCCTTGTGGCCTGGTTTTTTTATaa                                <  1:409115/149‑1 (MQ=255)                                                                                                                           ggaGTGAAAATCACGGGTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTACTCGGTCGTCGCAAAAAACAAAACAAATAATACAATATGACCCAGGTCCTTGTGGCCTGGTTTTTTTATAATTac                            <  2:563156/147‑1 (MQ=255)                                                                                                                           ggaGTGAAAAAAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATGTGCAGCATTAGGTTCATTATTGTTATTCGGTAGTCGCAAAAAACAAAACAAATAATACAATATGACCCAGGTCCTTGTGGCCTGGTTTTTTTATAATTac                            <  2:325521/147‑1 (MQ=255)                                                                                                                           gTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTATTCGGTCGTCGCAAAAAACAAAACAAATAATACAATATGACCCAGGTCCTTGTGGCCTGGTTTTTTTATAATTac                            <  1:615565/149‑1 (MQ=255)                                                                                                                           gTAGGGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATATGCAGCATTAGGTTCATTATTGTTATTCGGTCGTCGCAAAAAACAAAACAAATAATACAATATGACCCAGGTCCTTGTGGCCTGGTTTTTTTATAATTac                            <  2:502683/149‑1 (MQ=255)                                                                                                                            tAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTATTCGGTCGTCGCAAAAAACAAAACAAATAATACAATATGACCCAGGTCCTTGTGGCCTGGTTTTTTTATAATTaca                           >  1:413927/1‑149 (MQ=255)                                                                                                                            tAGTGAAAATAACGGCTCAAAGAACGCAGCGTTATTTGGTTGATTATGTGCAGCATTAGGGTCATTATTGTTATTCGGTCGTCGCAAAAAACAAAACAAATAATACAATATGACCCAGGTCCTTGTGGCCTGGTTTTTTTATAATTaca                           <  2:31497/149‑1 (MQ=25)                                                                                                                               tGAAAATAACGGCTCAAATAACGCCACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTATTCGGTCGTCGCAAAAAACAAAACAAATAATACAATATGACCCAGGTCCTTGTGGCCTGGTTTTTTTATAATTACACAt                        >  1:554608/1‑149 (MQ=255)                                                                                                                                  aaaTAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTATTCGGTCGTCGCAAAAAACAAAACAAATAATACAATATGACCCAGGTCCTTGTGGCCTGGTTTTTTTATAATTTCACATGCa                     >  1:292106/1‑149 (MQ=255)                                                                                                                                      aaCGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTCTTGTTATTCGGTCGTCGCAAAAAACAAAACAAATAATACAATATGACCCAGGTCCTTGTTGCCTGGTTTTTTTATAATTTAACATgaattaa                 >  2:253930/1‑143 (MQ=21)                                                                                                                                      aaCGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTATTCGCTCGCCGCAAAAAACAAAACAAATAATACAATATGACCCAGGTCCTTGTGGCCTGGTTTTTTTATAATTACACATGCCATaa                 >  2:378089/1‑148 (MQ=255)                                                                                                                                               aagaaCGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTATTCGGTCGTCGCAAAAAACAAAACAAATAATACAATATGACCCAGGTCCTTGTGGCCTGGTTTTTTTATAATTACACATGCAATAGATGTAtttt        <  2:185898/146‑1 (MQ=255)                                                                                                                                                    cGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTATTCGGTCGTCGCAAAAAACAAAACAAATAATACAATATGACCCAGGTCCTTGTGGCCTGGTTTTTTTATAATTACACATGCAATAGATGTATTTTTCata   >  2:344787/1‑149 (MQ=255)                                                                                                                                                    cGCAACGTTATTTGGGGTGTTATTTGCAGCATTAGGTTCATTATTGTTATTCGGTCGTCGCAAAAAACAAAACAAATAATACAATATGACCCAGGTCCTTGTGGCCTGGTTTTTTTATAATTACACATGCAATAGATGTATTTTTCata   >  2:807769/1‑149 (MQ=255)                                                                                                                                                     gCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTATTCGGTCGTCGCAAAAAACAAAACAAATAATACAATATGACCCAGGTCCTTGTGGCCTGGTTTTTTTATAATTACACATGCAATAGATGTATTTTTCatat  >  2:497023/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     CTCAGACTCAGACAGTGATTCAGACAGCGATTCAGACTCGGATGCAGGAAAACATACACCTGTTAAACCAATGAGTACTACTAAAGACCATCACAATAAAGCAAAAGCATTACCAGAAACAGGTAGTGAAAATAACGGCTCAAATAACGCAACGTTATTTGGTGGATTATTTGCAGCATTAGGTTCATTATTGTTATTCGGTCGTCGCAAAAAACAAAACAAATAATACAATATGACCCAGGTCCTTGTGGCCTGGTTTTTTTATAATTACACATGCAATAGATGTATTTTTCATAT  >  USA300TCH1516_ALE/622677‑622973

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.