BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	665005 =	100 (1.160)	3 (0.040)	3/282	7.6	3.0%	intergenic (+17/‑152)	ywqN_2/paiA_1	Putative NAD(P)H‑dependent FMN‑containing oxidoreductase YwqN/Spermidine/spermine N(1)‑acetyltransferase
*	?	USA300TCH1516_ALE	665029 =	101 (1.230)	3 (0.040)	3/282	7.6	3.0%	intergenic (+41/‑128)	ywqN_2/paiA_1	Putative NAD(P)H‑dependent FMN‑containing oxidoreductase YwqN/Spermidine/spermine N(1)‑acetyltransferase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 104 total aligned reads displayed.

AAATATAGTTTAGACTTTTTAGGTGCCACTTTAAATGGTTATATTATTGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACTTGTTAATAAGGGGAGAAA  >  USA300TCH1516_ALE/664857‑665153

aaaTATAGTTTAGACTTTTTAGGTGCCACTTTAAATGGTTATATTATTGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTaa                                                                                                                                                      >  1:548539/1‑149 (MQ=255)

    ataGTTTAGACTTTTTAGGTGCCACTTTAAATGGTTATATTATTGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATCCCTCATACTAAACGa                                                                                                                                                  >  2:241095/1‑149 (MQ=255)

      aGTTTAGACTTTTTAGGTGCCACTTTAAATGGTTATATTATTGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGGCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAg                                                                                                                                                >  1:629111/1‑149 (MQ=255)

        tttAGACTTTTTAGGTGCCACTTTAAATGGTTATATTATTGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTg                                                                                                                                              >  1:755426/1‑149 (MQ=255)

             aCTTTTTAGGTGCCACTTTAAATGGTTATATTATTGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGAAATACCTCATACTAAACGAAGTGAtttt                                                                                                                                         >  2:66886/1‑149 (MQ=255)

                ttttAGGTGCTGCTTGAGCTGGTTATAGTATTGGAACTGCTGAAAGGGCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTg                                                                                                                                      >  2:781720/1‑149 (MQ=255)

                  ttAGGTGCCACTTTAAATGGTTATATTATTGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGGCAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCt                                                                                                                                    >  1:246672/1‑149 (MQ=255)

                  ttAGGTGCCACTTTAAATGGTTATATTATTGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCt                                                                                                                                    >  1:148223/1‑149 (MQ=255)

                     ggTGCCACTTTAAATGGTTATATTATTGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCg                                                                                                                                 <  2:48107/149‑1 (MQ=255)

                      gTGCCACTTTAAATGGTTATATTATTGGAACTGCTGAAAATCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGt                                                                                                                                <  2:472881/149‑1 (MQ=255)

                      gTGCCACTTTAAATGGTTATATTATTGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGt                                                                                                                                <  2:206619/149‑1 (MQ=255)

                        gCCACTTTAAATGGTTATATTATTGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGtta                                                                                                                              >  1:902105/1‑149 (MQ=255)

                             tttAAATGGTTATATTATTGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGttattttt                                                                                                                         >  1:251421/1‑149 (MQ=255)

                             tttAAATGGTTATATTATTGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGttattttt                                                                                                                         >  1:356298/1‑149 (MQ=255)

                              ttAAATGGTTATATTATTGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGttatttttt                                                                                                                        <  2:185780/149‑1 (MQ=255)

                               tAAATGGGTATATTATTGGAACGGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGttatttttta                                                                                                                       <  2:726331/149‑1 (MQ=255)

                                  aTGGTTATATTATTGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGttattttttattt                                                                                                                    >  1:379490/1‑149 (MQ=255)

                                  aTGGTTATATTATTGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGttattttttattt                                                                                                                    >  1:379409/1‑149 (MQ=255)

                                  aTGGTTATATTATTGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGttattttttattt                                                                                                                    >  2:733811/1‑149 (MQ=255)

                                   tGGTTATATTATTGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGttattttttatttt                                                                                                                   >  1:863158/1‑149 (MQ=255)

                                         tattatTGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCGTCGTTATTTTTTATttttaattt                                                                                                             >  2:142860/1‑149 (MQ=255)

                                            tattGGAATTGCTGAAAAGTCTGGTGACATCATTAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATttttaattttaa                                                                                                          <  1:549963/149‑1 (MQ=255)

                                            tattGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATttttaattttaa                                                                                                          <  2:548539/149‑1 (MQ=255)

                                              ttGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACg                                                                                                        >  1:243066/1‑149 (MQ=255)

                                              ttGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACg                                                                                                        >  1:799079/1‑149 (MQ=255)

                                               tGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACgt                                                                                                       >  2:863641/1‑148 (MQ=255)

                                               tGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACgg                                                                                                       >  2:252408/1‑149 (MQ=255)

                                               tGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACgg                                                                                                       <  2:868873/149‑1 (MQ=255)

                                               tGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACgg                                                                                                       >  1:231375/1‑149 (MQ=255)

                                               tGGAACGTCTGAAAAGCCTGGTGACATCATGAAAGACAACTCTGCCTTAGCACGTGAAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACgg                                                                                                       <  2:87401/149‑1 (MQ=255)

                                                 gAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGaa                                                                                                     <  2:499126/149‑1 (MQ=255)

                                                 gAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGAAAAAGAAAAGAACAGTATATTGCAATAAGACATACCTCATACTAAACGACGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTCAACGGaa                                                                                                     <  1:677757/149‑1 (MQ=255)

                                                  aaCTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGaaa                                                                                                    <  1:269655/149‑1 (MQ=255)

                                                   aCTGCTGAAAAGCCTGGTGACATCATGAAGGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATGTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGagaa                                                                                                   >  2:637481/1‑149 (MQ=255)

                                                   aCTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGaaaa                                                                                                   >  1:555034/1‑149 (MQ=255)

                                                   aCTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGGTATTTTTTTTTTTTTATTTTAACGGaaga                                                                                                   >  2:893146/1‑147 (MQ=255)

                                                     cgctgAAAAGCCTGGTGACATCATGAAAGACAACCATGCCTTAGCACGTGCAACTGAGTGGAATAGTATACTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTCTATTTTTAATTTTAACGGAaaata                                                                                                 <  1:460533/148‑1 (MQ=255)

                                                       ctgAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCCTACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAaaatata                                                                                               <  2:152837/149‑1 (MQ=255)

                                                       ctgAAAAGCCTGGCGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAaaatata                                                                                               <  2:670179/149‑1 (MQ=255)

                                                       cggAAAAGCCTGGTTACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAaaatata                                                                                               <  2:806961/147‑1 (MQ=255)

                                                       cggAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATCCTAAACGTAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAaaatata                                                                                               <  2:152884/147‑1 (MQ=255)

                                                         gAAAAGCCTGGTGACCTCATGAAAGACAGCTAGGCCTTTGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAaaatataaa                                                                                             <  2:180711/149‑1 (MQ=255)

                                                          aaaaGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAAAGACGTACTTTGATGCTTCGTTATTTTTTATTTTTAATTTTAACGGAaaatataaat                                                                                            >  1:673638/1‑149 (MQ=255)

                                                           aaaGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAaaatataaata                                                                                           <  2:754719/149‑1 (MQ=255)

                                                           aaaGCCTGGTGACATCATGAAAGACAACTATGCCTGAGCTCGTGAATGTGACGAGGATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAaaatataaata                                                                                           <  2:379002/149‑1 (MQ=255)

                                                                    tcacctcatGAAAGACCACTTTGCCTTAGCACGGGCAACTGAGTGGAATAGTATATTTCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTg                                                                                  <  2:179978/144‑1 (MQ=255)

                                                                           atGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTCATCAGATTTTTAACGGAAAATATAAATATATAAATTGAATAGAc                                                                           >  1:482120/1‑149 (MQ=255)

                                                                             gAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACaa                                                                         <  2:796298/149‑1 (MQ=255)

                                                                              aaaGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAAt                                                                        >  2:453004/1‑149 (MQ=255)

                                                                                  aCAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTTTTTTTTTTTTTTTTATTTTTAATTTTAACGGAAAATTTAAATATATTAATTGAATACACAAtgctt                                                                    >  2:352341/1‑145 (MQ=255)

                                                                                  aCAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGGGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCAtt                                                                    >  2:760768/1‑149 (MQ=255)

                                                                                   cAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTg                                                                   >  1:812672/1‑149 (MQ=255)

                                                                                   aaaCTATGCCTTAGCACGTGGAACAGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAAACAATGATTg                                                                   <  1:342742/148‑1 (MQ=255)

                                                                                    aaCTATGCCTTGGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGt                                                                  <  2:275172/149‑1 (MQ=255)

                                                                                    aaCTAGTCCTTTGCACTTGCAACTGAGTGGAATAGTATATTGCAATAATACATTCCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAAACCAATCTAGTTTGATATAAATTGAATAGACAATCATTGt                                                                  <  2:901184/149‑1 (MQ=255)

                                                                                       tattctatAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTtta                                                               <  2:455968/142‑1 (MQ=255)

                                                                                       tATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTtta                                                               <  2:757272/149‑1 (MQ=255)

                                                                                       aaTGCCTTAGCACGTGCAACTGAGTGGAATAGTATAATGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTtta                                                               <  2:259008/148‑1 (MQ=255)

                                                                                        aTGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTGACGGAAAATATAAATATATAAATTGAATAGAAATTCATTTTttat                                                              >  2:633496/1‑149 (MQ=255)

                                                                                        aTGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAACATCTAATTATTTAAATTGAAGAGACAGACAATGTttat                                                              >  2:548086/1‑149 (MQ=255)

                                                                                        aTGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTttat                                                              >  1:785841/1‑149 (MQ=255)

                                                                                         tGCCTTAGCACGTGCAACTGAGTTGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTttatt                                                             <  2:936491/149‑1 (MQ=255)

                                                                                         tGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTttatt                                                             <  2:373616/149‑1 (MQ=255)

                                                                                                gCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTAtt                                                      >  1:791191/1‑149 (MQ=255)

                                                                                                   cGTGCAACTGAGTGGAATAATATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAg                                                   <  1:572538/149‑1 (MQ=255)

                                                                                                        aaCTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGt                                              <  2:669884/149‑1 (MQ=255)

                                                                                                         aCTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATGGACAATCATTGTTTATTAAGGATTGAGCAAGtt                                             >  2:736613/1‑149 (MQ=255)

                                                                                                         aCTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGCAAATCATTGTTTATTAAGTCTTGAGCAAGtt                                             >  2:396542/1‑149 (MQ=255)

                                                                                                         aCTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGTGCAAGtt                                             >  2:736040/1‑149 (MQ=255)

                                                                                                           tGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTtgt                                           <  1:632265/149‑1 (MQ=255)

                                                                                                           tGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTtgt                                           >  1:831477/1‑149 (MQ=255)

                                                                                                           tGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATCGTTTATTAAGTATGGAGTAAGTtgt                                           >  1:769931/1‑149 (MQ=255)

                                                                                                            gaggtgAATAGTATATTGCAATAAGCCATACCTCATACTAAACGAAGTGCTTAACTGCTCCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTtgtg                                          <  1:213225/144‑1 (MQ=255)

                                                                                                                     aGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGc                                 <  1:241095/149‑1 (MQ=255)

                                                                                                                     aGTATATTGCAAAAAGACATACCTCATACTAAACGAAGTGATTTTTTTCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAAGAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGc                                 <  2:237056/149‑1 (MQ=255)

                                                                                                                       tataTTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGTTTCGTTATTTTTAATTTTACATTTTAACGTAAAATATAAGTTTATAAGTTGATAAGACATTCATTTTTTATTATGTTTTGTACAAGTTGTGGTAAAATggat                               >  2:763713/1‑146 (MQ=255)

                                                                                                                       tataTTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCg                               <  1:733811/149‑1 (MQ=255)

                                                                                                                       tacatTGCAATAAGACATACCTAATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCg                               <  1:185951/146‑1 (MQ=255)

                                                                                                                         tatTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGtt                             <  1:246633/149‑1 (MQ=255)

                                                                                                                           ttGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTCAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGttat                           <  2:597793/149‑1 (MQ=255)

                                                                                                                            tGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGTGCAGGTTGTGGTATAAAGCCGgtatt                          >  2:326171/1‑149 (MQ=255)

                                                                                                                              cAATAAGACATACCTCATACTAAACGAAGTGATTTTTTTTTTTGTTTTTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAGTCATTGTTTATTAAGTATTGAGCAAATTGTGGTATAAAGACGttatgca                        >  2:438127/1‑146 (MQ=255)

                                                                                                                                atagggcATACCTCTTACTTAACGAGGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTaaac                      <  2:14708/143‑2 (MQ=255)

                                                                                                                                aTAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTaaaa                      >  1:323261/1‑149 (MQ=255)

                                                                                                                                   aGACTTACCTTATACTAAACTAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACtt                   <  2:726313/149‑1 (MQ=255)

                                                                                                                                    agcATGCCTCATTCTAAACAAAGTTATTGTTTGTTTCGTTATTTTTTATTTTGAATTTTAACGGAAAATATAAATAGATAAAGTGAATAGACAATCATTGTTTATTAAGTGTTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACTTg                  <  2:526441/147‑1 (MQ=255)

                                                                                                                                        tACCTCATACTAAACGAAGTGATTTTTTGCGTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTAGTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACTTGTtaa              <  2:701964/149‑1 (MQ=255)

                                                                                                                                            tCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACTTGTTAATAAg          <  1:910386/149‑1 (MQ=255)

                                                                                                                                            tCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACTTGTTAATAAg          >  1:344725/1‑149 (MQ=255)

                                                                                                                                             cATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGCCACTCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACTTGTTAATAAgg         >  1:290833/1‑149 (MQ=255)

                                                                                                                                             cATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACTTGTTAATAAgg         >  2:266442/1‑149 (MQ=255)

                                                                                                                                             aaTACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACTTGTTAATAAgg         >  1:679575/2‑149 (MQ=255)

                                                                                                                                                 cTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACTTGTTAATAAGGGgag     >  1:552915/1‑149 (MQ=255)

                                                                                                                                                  tAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATGTATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGACGTTATTAAAACTTGTTAATAAGGGggga    >  1:362958/1‑149 (MQ=255)

                                                                                                                                                  tAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTAAAAAGCAGATTGCAAGTTGTGGTATAATGCCGTTATTAAAACTTGTTAATAAGGGgaga    >  1:723191/1‑149 (MQ=255)

                                                                                                                                                   aaaCGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTTAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACTTGTTAATAAGGGGGGaa   >  1:534254/1‑149 (MQ=255)

                                                                                                                                                    aaCGAAGTGATTTTTTGCTTTGTTATTTTTTATTTTTGATTTTAACGGAAAATATAGATATATAGATTGACTAGAAGATCGTTGTTTATTATATTTTGAGAAAGTTGTGGTTTAATGTGGTTTTTAACTCTTGTTAGTAAGAGGAGaat  >  2:629017/1‑148 (MQ=255)

                                                                                                                                                    aaCGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACTTGTTAATAAGGGGAGgaa  >  1:864624/1‑149 (MQ=255)

                                                                                                                                                    aaCGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACTTGTTAATAAGGGGAGaaa  <  1:915225/149‑1 (MQ=255)

                                                                                                                                                    aaCGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACTTGTTAATAAGGGGAGaaa  <  1:934444/149‑1 (MQ=255)

AAATATAGTTTAGACTTTTTAGGTGCCACTTTAAATGGTTATATTATTGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACTTGTTAATAAGGGGAGAAA  >  USA300TCH1516_ALE/664857‑665153

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.