BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	665005 =	100 (1.160)	3 (0.040)	3/282	7.6	3.0%	intergenic (+17/‑152)	ywqN_2/paiA_1	Putative NAD(P)H‑dependent FMN‑containing oxidoreductase YwqN/Spermidine/spermine N(1)‑acetyltransferase
*	?	USA300TCH1516_ALE	665029 =	101 (1.230)	3 (0.040)	3/282	7.6	3.0%	intergenic (+41/‑128)	ywqN_2/paiA_1	Putative NAD(P)H‑dependent FMN‑containing oxidoreductase YwqN/Spermidine/spermine N(1)‑acetyltransferase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 107 total aligned reads displayed.

GCCACTTTAAATGGTTATATTATTGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACTTGTTAATAAGGGGAGAAAGTCATGTTCAAGGTAAGACAAGC  >  USA300TCH1516_ALE/664881‑665176

gCCACTTTAAATGGTTATATTATTGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGtta                                                                                                                                                     >  1:902105/1‑149 (MQ=255)

     tttAAATGGTTATATTATTGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGttattttt                                                                                                                                                >  1:251421/1‑149 (MQ=255)

     tttAAATGGTTATATTATTGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGttattttt                                                                                                                                                >  1:356298/1‑149 (MQ=255)

      ttAAATGGTTATATTATTGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGttatttttt                                                                                                                                               <  2:185780/149‑1 (MQ=255)

       tAAATGGGTATATTATTGGAACGGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGttatttttta                                                                                                                                              <  2:726331/149‑1 (MQ=255)

          aTGGTTATATTATTGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGttattttttattt                                                                                                                                           >  2:733811/1‑149 (MQ=255)

          aTGGTTATATTATTGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGttattttttattt                                                                                                                                           >  1:379409/1‑149 (MQ=255)

           tGGTTATATTATTGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGttattttttatttt                                                                                                                                          >  1:863158/1‑149 (MQ=255)

                 tattatTGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCGTCGTTATTTTTTATttttaattt                                                                                                                                    >  2:142860/1‑149 (MQ=255)

                    tattGGAATTGCTGAAAAGTCTGGTGACATCATTAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATttttaattttaa                                                                                                                                 <  1:549963/149‑1 (MQ=255)

                    tattGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATttttaattttaa                                                                                                                                 <  2:548539/149‑1 (MQ=255)

                      ttGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACg                                                                                                                               >  1:243066/1‑149 (MQ=255)

                      ttGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACg                                                                                                                               >  1:799079/1‑149 (MQ=255)

                       tGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACgt                                                                                                                              >  2:863641/1‑148 (MQ=255)

                       tGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACgg                                                                                                                              >  2:252408/1‑149 (MQ=255)

                       tGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACgg                                                                                                                              <  2:868873/149‑1 (MQ=255)

                       tGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACgg                                                                                                                              >  1:231375/1‑149 (MQ=255)

                       tGGAACGTCTGAAAAGCCTGGTGACATCATGAAAGACAACTCTGCCTTAGCACGTGAAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACgg                                                                                                                              <  2:87401/149‑1 (MQ=255)

                         gAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTTTTTTTAATTTTAACGCaa                                                                                                                            >  2:159826/1‑149 (MQ=255)

                         gAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGaa                                                                                                                            <  2:499126/149‑1 (MQ=255)

                         gAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGAAAAAGAAAAGAACAGTATATTGCAATAAGACATACCTCATACTAAACGACGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTCAACGGaa                                                                                                                            <  1:677757/149‑1 (MQ=255)

                          aaCTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGaaa                                                                                                                           <  1:269655/149‑1 (MQ=255)

                           aCTGCTGAAAAGCCTGGTGACATCATGAAGGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATGTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGagaa                                                                                                                          >  2:637481/1‑149 (MQ=255)

                           aCTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGaaaa                                                                                                                          >  1:555034/1‑149 (MQ=255)

                           aCTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGGTATTTTTTTTTTTTTATTTTAACGGaaga                                                                                                                          >  2:893146/1‑147 (MQ=255)

                             cgctgAAAAGCCTGGTGACATCATGAAAGACAACCATGCCTTAGCACGTGCAACTGAGTGGAATAGTATACTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTCTATTTTTAATTTTAACGGAaaata                                                                                                                        <  1:460533/148‑1 (MQ=255)

                               ctgAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCCTACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAaaatata                                                                                                                      <  2:152837/149‑1 (MQ=255)

                               ctgAAAAGCCTGGCGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAaaatata                                                                                                                      <  2:670179/149‑1 (MQ=255)

                               cggAAAAGCCTGGTTACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAaaatata                                                                                                                      <  2:806961/147‑1 (MQ=255)

                               cggAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATCCTAAACGTAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAaaatata                                                                                                                      <  2:152884/147‑1 (MQ=255)

                                 gAAAAGCCTGGTGACCTCATGAAAGACAGCTAGGCCTTTGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAaaatataaa                                                                                                                    <  2:180711/149‑1 (MQ=255)

                                  aaaaGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAAAGACGTACTTTGATGCTTCGTTATTTTTTATTTTTAATTTTAACGGAaaatataaat                                                                                                                   >  1:673638/1‑149 (MQ=255)

                                   aaaGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAaaatataaata                                                                                                                  <  2:754719/149‑1 (MQ=255)

                                   aaaGCCTGGTGACATCATGAAAGACAACTATGCCTGAGCTCGTGAATGTGACGAGGATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAaaatataaata                                                                                                                  <  2:379002/149‑1 (MQ=255)

                                            tcacctcatGAAAGACCACTTTGCCTTAGCACGGGCAACTGAGTGGAATAGTATATTTCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTg                                                                                                         <  2:179978/144‑1 (MQ=255)

                                                   atGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTCATCAGATTTTTAACGGAAAATATAAATATATAAATTGAATAGAc                                                                                                  >  1:482120/1‑149 (MQ=255)

                                                     gAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACaa                                                                                                <  2:796298/149‑1 (MQ=255)

                                                      aaaGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAAt                                                                                               >  2:453004/1‑149 (MQ=255)

                                                          aCAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTTTTTTTTTTTTTTTTATTTTTAATTTTAACGGAAAATTTAAATATATTAATTGAATACACAAtgctt                                                                                           >  2:352341/1‑145 (MQ=255)

                                                          aCAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGGGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCAtt                                                                                           >  2:760768/1‑149 (MQ=255)

                                                           cAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTg                                                                                          >  1:812672/1‑149 (MQ=255)

                                                           aaaCTATGCCTTAGCACGTGGAACAGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAAACAATGATTg                                                                                          <  1:342742/148‑1 (MQ=255)

                                                            aaCTAGTCCTTTGCACTTGCAACTGAGTGGAATAGTATATTGCAATAATACATTCCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAAACCAATCTAGTTTGATATAAATTGAATAGACAATCATTGt                                                                                         <  2:901184/149‑1 (MQ=255)

                                                               tattctatAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTtta                                                                                      <  2:455968/142‑1 (MQ=255)

                                                               tATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTtta                                                                                      <  2:757272/149‑1 (MQ=255)

                                                               aaTGCCTTAGCACGTGCAACTGAGTGGAATAGTATAATGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTtta                                                                                      <  2:259008/148‑1 (MQ=255)

                                                                aTGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTGACGGAAAATATAAATATATAAATTGAATAGAAATTCATTTTttat                                                                                     >  2:633496/1‑149 (MQ=255)

                                                                aTGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAACATCTAATTATTTAAATTGAAGAGACAGACAATGTttat                                                                                     >  2:548086/1‑149 (MQ=255)

                                                                aTGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTttat                                                                                     >  1:785841/1‑149 (MQ=255)

                                                                 tGCCTTAGCACGTGCAACTGAGTTGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTttatt                                                                                    <  2:936491/149‑1 (MQ=255)

                                                                 tGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTttatt                                                                                    <  2:373616/149‑1 (MQ=255)

                                                                        gCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTAtt                                                                             >  1:791191/1‑149 (MQ=255)

                                                                           cGTGCAACTGAGTGGAATAATATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAg                                                                          <  1:572538/149‑1 (MQ=255)

                                                                                aaCTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGt                                                                     <  2:669884/149‑1 (MQ=255)

                                                                                 aCTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATGGACAATCATTGTTTATTAAGGATTGAGCAAGtt                                                                    >  2:736613/1‑149 (MQ=255)

                                                                                 aCTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGCAAATCATTGTTTATTAAGTCTTGAGCAAGtt                                                                    >  2:396542/1‑149 (MQ=255)

                                                                                 aCTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGTGCAAGtt                                                                    >  2:736040/1‑149 (MQ=255)

                                                                                   tGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTtgt                                                                  >  1:831477/1‑149 (MQ=255)

                                                                                   tGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTtgt                                                                  <  1:632265/149‑1 (MQ=255)

                                                                                    gaggtgAATAGTATATTGCAATAAGCCATACCTCATACTAAACGAAGTGCTTAACTGCTCCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTtgtg                                                                 <  1:213225/144‑1 (MQ=255)

                                                                                             aGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGc                                                        <  1:241095/149‑1 (MQ=255)

                                                                                             aGTATATTGCAAAAAGACATACCTCATACTAAACGAAGTGATTTTTTTCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAAGAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGc                                                        <  2:237056/149‑1 (MQ=255)

                                                                                               tataTTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGTTTCGTTATTTTTAATTTTACATTTTAACGTAAAATATAAGTTTATAAGTTGATAAGACATTCATTTTTTATTATGTTTTGTACAAGTTGTGGTAAAATggat                                                      >  2:763713/1‑146 (MQ=255)

                                                                                               tataTTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCg                                                      <  1:733811/149‑1 (MQ=255)

                                                                                               tacatTGCAATAAGACATACCTAATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCg                                                      <  1:185951/146‑1 (MQ=255)

                                                                                               aatatTGCAATAAGACATACCTCATACTAAACGAAGTTATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTATGTATTGAGCAAGTTGTGGTATAATGCCg                                                      <  1:563166/148‑1 (MQ=255)

                                                                                                 tatTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGtt                                                    <  1:246633/149‑1 (MQ=255)

                                                                                                   ttGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTCAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGttat                                                  <  2:597793/149‑1 (MQ=255)

                                                                                                    tGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGTGCAGGTTGTGGTATAAAGCCGgtatt                                                 >  2:326171/1‑149 (MQ=255)

                                                                                                      cAATAAGACATACCTCATACTAAACGAAGTGATTTTTTTTTTTGTTTTTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAGTCATTGTTTATTAAGTATTGAGCAAATTGTGGTATAAAGACGttatgca                                               >  2:438127/1‑146 (MQ=255)

                                                                                                        atagggcATACCTCTTACTTAACGAGGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTaaac                                             <  2:14708/143‑2 (MQ=255)

                                                                                                        aTAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTaaaa                                             >  1:323261/1‑149 (MQ=255)

                                                                                                           aGACTTACCTTATACTAAACTAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACtt                                          <  2:726313/149‑1 (MQ=255)

                                                                                                            agcATGCCTCATTCTAAACAAAGTTATTGTTTGTTTCGTTATTTTTTATTTTGAATTTTAACGGAAAATATAAATAGATAAAGTGAATAGACAATCATTGTTTATTAAGTGTTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACTTg                                         <  2:526441/147‑1 (MQ=255)

                                                                                                                tACCTCATACTAAACGAAGTGATTTTTTGCGTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTAGTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACTTGTtaa                                     <  2:701964/149‑1 (MQ=255)

                                                                                                                    tCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACTTGTTAATAAg                                 >  1:344725/1‑149 (MQ=255)

                                                                                                                    tCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACTTGTTAATAAg                                 <  1:910386/149‑1 (MQ=255)

                                                                                                                     cATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGCCACTCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACTTGTTAATAAgg                                >  1:290833/1‑149 (MQ=255)

                                                                                                                     cATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACTTGTTAATAAgg                                >  2:266442/1‑149 (MQ=255)

                                                                                                                     aaTACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACTTGTTAATAAgg                                >  1:679575/2‑149 (MQ=255)

                                                                                                                         cTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACTTGTTAATAAGGGgag                            >  1:552915/1‑149 (MQ=255)

                                                                                                                          tAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATGTATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGACGTTATTAAAACTTGTTAATAAGGGggga                           >  1:362958/1‑149 (MQ=255)

                                                                                                                          tAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTAAAAAGCAGATTGCAAGTTGTGGTATAATGCCGTTATTAAAACTTGTTAATAAGGGgaga                           >  1:723191/1‑149 (MQ=255)

                                                                                                                           aaaCGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTTAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACTTGTTAATAAGGGGGGaa                          >  1:534254/1‑149 (MQ=255)

                                                                                                                            aaCGAAGTGATTTTTTGCTTTGTTATTTTTTATTTTTGATTTTAACGGAAAATATAGATATATAGATTGACTAGAAGATCGTTGTTTATTATATTTTGAGAAAGTTGTGGTTTAATGTGGTTTTTAACTCTTGTTAGTAAGAGGAGaat                         >  2:629017/1‑148 (MQ=255)

                                                                                                                            aaCGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACTTGTTAATAAGGGGAGgaa                         >  1:864624/1‑149 (MQ=255)

                                                                                                                            aaCGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACTTGTTAATAAGGGGAGaaa                         <  1:915225/149‑1 (MQ=255)

                                                                                                                             aCGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTCTAATGCCGTTATTAAAACTTGTTAATAAGTGGAaaaat                        >  2:734197/1‑148 (MQ=255)

                                                                                                                              cGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACTTGTTAATAAGGGGAGAAAGt                       <  2:226666/149‑1 (MQ=255)

                                                                                                                              cGAAGTGATTTATTGCTTCTTTATTTTTTATTTTTAATTTTAAAGGAAAATATAAACATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACTTGTTAATAAGGGGAGAAAGt                       <  2:21436/149‑1 (MQ=255)

                                                                                                                                     aTTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACTTGTTAATAAGGGGAGAAAGTCATGTTc                <  1:812135/149‑1 (MQ=255)

                                                                                                                                      ttttgtGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAACCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACTTGTTAATAAGGGGAGAAAGTCATGTTCa               <  1:93290/149‑1 (MQ=255)

                                                                                                                                         tttGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACTTGTTAATAAGGGGAGAAAGTCATGTTCAAgg            <  2:720424/149‑1 (MQ=255)

                                                                                                                                         tttGCTTCGTAAGTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACTTGTTAATAAGGGGAGAAAGTCATGTTCAAgg            <  2:650199/149‑1 (MQ=255)

                                                                                                                                               tCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAACTATATAAATTGAATAGACAATCATTGTTTCTGAAGTATTAAGCAAGTTGTGGAATAATGCCGTTATTAAACCGTGTTAATAAGGGGAGAAAGTGATGTTCAAGGTACGAc      >  2:149812/1‑149 (MQ=255)

                                                                                                                                               tCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACTTGTTAATAAGGGGGGAAAGTCATGTTAAAGGTAAGAc      >  2:532321/1‑149 (MQ=255)

                                                                                                                                               tCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACTTGTTAATAAGGGGCGAAAGTCATGTTCAAGGTaaaaa      >  2:828221/1‑146 (MQ=255)

                                                                                                                                               tCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACTTGTTAATAAGGGGAGAAAGTCATGTTCAAGGTAAGAc      >  2:815777/1‑149 (MQ=255)

                                                                                                                                                   tattttttatttttAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACTTGTTAATAAGGGGAGAAAGTCATGTTCAAGGTAAGACAAGc  >  1:845293/1‑149 (MQ=255)

                                                                                                                                                   tattttttatttttAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACTTGTTAATAAGGGGAGAAAGTCATGTTCAAGGTAAGACAAGc  >  1:845260/1‑149 (MQ=255)

GCCACTTTAAATGGTTATATTATTGGAACTGCTGAAAAGCCTGGTGACATCATGAAAGACAACTATGCCTTAGCACGTGCAACTGAGTGGAATAGTATATTGCAATAAGACATACCTCATACTAAACGAAGTGATTTTTTGCTTCGTTATTTTTTATTTTTAATTTTAACGGAAAATATAAATATATAAATTGAATAGACAATCATTGTTTATTAAGTATTGAGCAAGTTGTGGTATAATGCCGTTATTAAAACTTGTTAATAAGGGGAGAAAGTCATGTTCAAGGTAAGACAAGC  >  USA300TCH1516_ALE/664881‑665176

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.