| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 52489 = | 126 (1.040) | 33 (0.310) | 7/250 | 6.7 | 25.0% | intergenic (+99/‑574) | USA300HOU_RS00215/USA300HOU_RS00220 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 52983 | 86 (0.800) | intergenic (+593/‑80) | USA300HOU_RS00215/USA300HOU_RS00220 | hypothetical protein/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
ACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/52643‑52489‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatttcacgcgatttTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACG < USA300TCH1516_ALE/52983‑52845 ACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTCCGATGATTTCAAACGATTCCTCTCATTATTTCCCGTGATTTTCACGCAATTTCTCCTATGATTTTAAACGTTTTCTCTGATT > 2:818729/1‑141ACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTAGGATGTTTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCACTCCATTATTACTATGTTTTCAAATGTTTCCTCTGATT > 2:866279/1‑141ACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCAATTATTACTATGTTTTTAAACGATTTATCTGATT > 2:759792/1‑141 CTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTTTTACGATGTTTTAAACCGATACCTTTGATTA > 2:1042317/1‑141 CTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGTTTTCACACGATTCCTCTGATTA > 1:501183/1‑141 CTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCCGATTATTTCACGTGATTTTCGCGCGATTATTACTATGTTTTTATATGTTTCCTCTGATTA > 2:1130230/1‑141 TACGATGATTTCAATCGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTAT > 1:729401/1‑141 cccATGATTTCAATCGATTCCTATGATTACTTCACGTGATTTTCGCGCGATTACTACGACGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATT < 1:383854/138‑1 ACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATT > 1:786762/1‑141 ACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATT > 1:1374627/1‑141 ATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCc > 1:1299728/1‑140 ATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCA > 1:550269/1‑141 TGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGAGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCAC < 2:729401/141‑1 TGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCAATTACTACGATGATTTCAAACGAATCCTCTAATTATCTCACGTGATTTTCACGCGATTTCTACGATGATTGCAAACGCATCCTTTCATTATTTCgg > 2:1262310/1‑139 TGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCACGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCACGCGATTACTACGATTTTTTAACACTTTTCATCTCATTATTTCAg > 2:1333145/1‑140 TTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTCCGATGATTTCAAACGATTCCTCTGATTATTTCACCTGATTTCCGCACCATTTCTAGGATGGTTTTAAACGTTTCCTCTGATTATTTCACctt > 2:553410/1‑138 TTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCG > 1:1371941/1‑141 TTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTATTACGATGTTTTCAAACGTTTCCTTTGATTATTCCACGCGt > 2:1165465/1‑140 TTCAAACGATACCTGTGATTATTTCACGTGATTTTCGCGCNATTACTCCGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCCCGATTCTTANGATCATCGCACACGATTCCCCTTATTATTNCACGCGA > 2:928231/1‑141 TCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAACCGATGCCTCTGATTATTTCACGCGAT < 1:1362545/141‑1 TCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGAT < 2:1156336/141‑1 CAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACTATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCCATTACTCCGATGATTTCAAGTGGTTCCTCTGTTTATTTCACGAGATT > 2:171525/1‑141 CAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATTATTTTAAACGGTTCCGCTGATTATTTCACACGATT > 2:769262/1‑141 CAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCCATTTCTCCTATTTTTTAAAACGATTCCTATGATTGTTTTACGCGATT > 2:252111/1‑141 CAAACGATTCCTCTGATTATTTCACGTGATTTTCGCACGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGGTTTTCGCGCGATTACTAGGGTGGTTTTAAGCGATTCCTCTGATTATTTCACGggttt > 2:1121306/1‑136 ATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATGACTACGATGATTTCAAACGAGTCCTCTGATTATTTCACGCGATTTACGCG > 2:1362545/1‑141 TCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTCTTTTACGTGATTTTCGCGCGATTACTACGATGTTTTCAAACGATTCCTCTGCTTATTTCACGCGATTTTCGCtca > 2:1174022/1‑138 TTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTACTCGGTAGTTTCGCGCGATTACTACGATG < 1:1361081/141‑1 TGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATT < 1:915947/105‑1 CGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGA < 1:1124612/106‑1 CGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGA < 2:192992/106‑1 CGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATGATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGA > 1:192992/1‑106 CGATTACTACGATGATTGAAAAGGATTCCTCTGAGTTTTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCTCGCGCTTTTCCCGCGGTTACTACGATGATTTCAAAGGATTCtcc > 1:602885/1‑138 TTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCACGCGATTTTTACGATGTTTTCAAACGTTTTCTCTGATTATTTCGCGTGA > 2:1172013/1‑141 AAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCACGCGATTACTACTATGATTTCAAACGAATCCTCTGATTATTTCACGTGATTT > 2:186685/1‑141 ATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGAT > 2:50156/1‑79 ATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGAT < 2:563651/79‑1 ATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGAT > 1:111525/1‑79 ATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGAT < 1:50156/79‑1 ATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGAT < 2:111525/79‑1 TTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATT < 1:419015/66‑1 CTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTCCACACCATTACTCCGATGATATCAAACGATTCCCCTGATTATCCCACGAGATTTCCACGCGATTA > 2:1091558/1‑141 ttTTTCACGTGTTTTTTGCGCGATTCCTTCGATTTTTTCAATCGGTTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTCCGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACG < 2:327902/139‑1 TGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATT < 1:898914/50‑1 TGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATT < 1:209397/50‑1 TTTCTCGCGATTACTACTATGATTTCAAACGATCCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACG < 2:1247905/141‑1 TCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGAT < 2:493108/86‑1 TCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGAT > 1:493108/1‑86 CGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATT > 1:1221969/1‑64 CGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATT < 2:1221969/64‑1 CGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGA < 2:307787/51‑1 GCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTC > 1:568467/1‑141 CGCGATTACTACGATTATTTCAAACGATTCCTCTTATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCC < 1:562866/141‑1 ttacatCGATGATTTCAAACCATCCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGA < 2:907808/135‑1 TTACTCCGATTATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTACAAACGATTCCTCTGA < 1:699273/141‑1 TTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGA < 1:1089566/141‑1 TTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGA < 1:1082177/141‑1 CTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTT > 1:754929/1‑44 tcccattATTTCAAACGATTCCTCTCATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTAT < 2:635509/134‑1 TACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTAT < 2:132513/141‑1 tATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACG < 1:1366110/140‑1 tATTTCAAACGATTCCTCTGATTATGTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACG < 1:448726/140‑1 GATTTCAAACGATTCCTCTGATTATTTCACGCGATCTTCGCGCGATTACTACGATGCTTTCTATCTATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACG < 1:995865/141‑1 TCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATT > 1:1277665/1‑65 TCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATT > 2:484024/1‑65 TTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATT > 2:419015/1‑66 TTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATT > 1:1154318/1‑57 TTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATT > 1:270517/1‑57 TTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATT < 2:270517/57‑1 TTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATT > 1:1058051/1‑57 ttactacTTCACGCCATTTTCGCGCGATTACTACGATTTTTTCAAACGATTCCTCTTATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTAC < 2:1274505/134‑1 GATTATTTCACGCGATTTTCGCGCGATTACTACGAT > 1:568208/1‑36 ATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCT > 1:615021/1‑54 tcTTTCACGCTATTTTCGCTCGATTACTACGATGATCTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCTATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACG < 2:1206672/139‑1 TATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTGCGCGCGATTACTACG < 1:1019534/141‑1 CGATTTTCGCGCGATTACTAGGTTGATTTCAAACGATTCCTCTGATTATTTCACGCGCTTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCA > 1:328128/1‑141 CGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGC > 1:971063/1‑111 CGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATT > 2:209397/1‑50 CGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATT > 2:898914/1‑50 CGATTTTCGCGCGATTACTACGATGATTGCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATCATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCA > 1:881736/1‑141 TTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAAC > 2:32734/1‑86 TTTCGCGCGATTCCTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACG < 1:572814/141‑1 TTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTG > 2:136537/1‑39 TTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTG < 1:136537/39‑1 ACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/52643‑52489‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatttcacgcgatttTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACG < USA300TCH1516_ALE/52983‑52845 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |