BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	52489 =	126 (1.040)	33 (0.310)	7/250	6.7	25.0%	intergenic (+99/‑574)	USA300HOU_RS00215/USA300HOU_RS00220	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 52983	86 (0.800)	33 (0.310)	7/250	6.7	25.0%	intergenic (+593/‑80)	USA300HOU_RS00215/USA300HOU_RS00220	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 128 total aligned reads displayed.

GTATCGTTGTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAAT  >  USA300TCH1516_ALE/52349‑52624

ttATCGTTCTTTTTTAAAGCATTAGAAGCCTTAAAGAAATAGTTTCTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTATGAAATACGAAAAATGTTGTTGa                                                                                                                                         <  2:46508/140‑1 (MQ=255)

gTATCGTTGTTTTTTAAAGCATTAGATGCCTTAAAGAAATATTTGTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGCTGTGGa                                                                                                                                         <  2:753970/141‑1 (MQ=255)

gTATCGTTGTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAGTCGTTCTGAAATACGAAAAATGTTGTGGa                                                                                                                                         >  2:912636/1‑141 (MQ=255)

gTATCGTTGTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGa                                                                                                                                         >  1:1010023/1‑141 (MQ=255)

gTATCGTTGTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGa                                                                                                                                         >  2:112430/1‑141 (MQ=255)

    cGTTGTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAATATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATc                                                                                                                                     <  2:167885/141‑1 (MQ=255)

      ttgttTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGaaacagg                                                                                                                                   >  2:810397/1‑137 (MQ=255)

      ttgttTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATcgc                                                                                                                                   >  1:991637/1‑141 (MQ=255)

      ttgttTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATcgc                                                                                                                                   >  1:1172013/1‑141 (MQ=255)

      ttgttTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATcgc                                                                                                                                   >  1:1165465/1‑141 (MQ=255)

      ttgttTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAAGTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATcgc                                                                                                                                   >  1:950286/1‑141 (MQ=255)

       tgttTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATcgcg                                                                                                                                  <  1:735099/141‑1 (MQ=255)

       tgttTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATcgcg                                                                                                                                  <  2:1092505/141‑1 (MQ=255)

       tgttTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATcgcg                                                                                                                                  <  1:1077191/141‑1 (MQ=255)

         ttttttAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTATGAAATACGAAAAATGTTGTGGAAATCGCGTg                                                                                                                                >  2:707520/1‑141 (MQ=255)

          tttttAAAGCATTAGATGCCTTAAAAAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGa                                                                                                                               >  1:680956/1‑141 (MQ=255)

           ttttAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGa                                                                                                                                         >  1:573541/1‑130 (MQ=255)

                  gCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCa                                                                                                                       >  1:1135790/1‑141 (MQ=255)

                  gCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCa                                                                                                                       >  1:331177/1‑141 (MQ=255)

                     ttAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCagag                                                                                                                    <  1:1081000/141‑1 (MQ=255)

                     ttAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCagag                                                                                                                    <  1:5537/141‑1 (MQ=255)

                      tacaTGCCTTAAAGAAATAGTGTTTCCCTGCAAATATTTATAGATATAATGAAAATGAATGAATAGTAAGCCAGGATAATGGAGTCTTAATCGTTGCCAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAgg                                                                                                                   <  1:597692/138‑1 (MQ=255)

                         aTGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAACATGTTATGGAAATCGCTTGACATAATCAGAGGaaa                                                                                                                >  2:94123/1‑140 (MQ=255)

                          tGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATc                                                                                                               <  1:1229923/141‑1 (MQ=255)

                             cTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGtt                                                                                                            <  1:552589/141‑1 (MQ=255)

                             cTTAAAGAAAGAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGtt                                                                                                            <  1:823120/141‑1 (MQ=255)

                                 aaGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGaa                                                                                                        >  1:868131/1‑141 (MQ=255)

                                  aGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATTGCGTGAAATAATCAGAGGAATCGTTTGaaa                                                                                                       >  2:119049/1‑141 (MQ=255)

                                  aGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGaaa                                                                                                       >  2:946591/1‑141 (MQ=255)

                                      aTAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAatcat                                                                                                   >  1:388129/1‑141 (MQ=255)

                                       tAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAatcatc                                                                                                  >  1:852759/1‑141 (MQ=255)

                                           ttttCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtag                                                                                              <  2:423856/141‑1 (MQ=255)

                                           ttttCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtag                                                                                              <  2:844729/141‑1 (MQ=255)

                                               cACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAAt                                                                                          >  1:494872/1‑141 (MQ=255)

                                                   gataaTATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg                                                                                      <  1:1321258/138‑1 (MQ=255)

                                                   gAAAATATTTATAGATATAATTAAAATTAATTCATATTAAGCCAGAATAATCTAGTCTTAATCGTTCAGAAATACGAAAAATGTTTCGGAAACAGGGTGAATTAATCAGAGTAATCGTTTGAAATCATGGTAGTAATcgcg                                                                                      >  2:519361/1‑141 (MQ=255)

                                                   gAAAATATTTATAGATATAATTAAAATTAATTAATCTTACGCCATGATATTGTAGTCTTAATCGTTATAAGATACTAAAAATGTTATGATTTTCGCGTGATATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg                                                                                      <  1:1354297/141‑1 (MQ=21)

                                                   gAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGTAAAATGTTGTGGAAATCGCGTGACATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg                                                                                      >  1:77323/1‑141 (MQ=255)

                                                   gAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg                                                                                      >  1:285977/1‑141 (MQ=255)

                                                   gAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg                                                                                      >  1:823389/1‑141 (MQ=255)

                                                   gAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGAAGTaacagcg                                                                                      >  2:1275352/1‑136 (MQ=255)

                                                     aaaTATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcgcg                                                                                    >  1:169864/1‑141 (MQ=255)

                                                     aaaTATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcgcg                                                                                    >  1:489843/1‑141 (MQ=255)

                                                      aaTATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGa                                                                                   <  1:1028247/141‑1 (MQ=255)

                                                            tataGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTCGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCa                                                                             >  1:941344/1‑141 (MQ=255)

                                                             ataGATATAATTAACAGTAATTAATATTAAGCCAGGATGATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCAc                                                                            >  1:757977/1‑141 (MQ=255)

                                                             ataGATATAATTAAAATTAATTAATATTAAGCCAGTAGAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTCGTAATCGCGCGAAGATCAc                                                                            >  1:603002/1‑141 (MQ=255)

                                                             ataGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCAc                                                                            >  1:447290/1‑141 (MQ=255)

                                                                   ataATTAAAATTAATTAAAATTAAGGCAGAATAATGTAGTATTAATTGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaaa                                                                      <  2:447290/141‑1 (MQ=25)

                                                                      attaaaattaaTTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAaataa                                                                   >  1:1333145/1‑141 (MQ=255)

                                                                      attaaaattaaTTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAaataa                                                                   >  1:1040328/1‑141 (MQ=255)

                                                                      attaaaattaaTTAATATTAAGCCAGGATAATGTAGTCTTAATCGTGCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGCGAaataa                                                                   >  1:1262310/1‑141 (MQ=255)

                                                                        taaaattaaTTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATc                                                                 >  1:186685/1‑141 (MQ=255)

                                                                        taaaattaaTTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATc                                                                 >  2:487206/1‑141 (MQ=255)

                                                                          aaattaaTTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGACGATGCGAGTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCag                                                               >  1:932475/1‑141 (MQ=37)

                                                                               aattaatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGGAATAATCAGAGGAATCGTTTGAAATCATCGTAGAAATCGCTCGAAAATCACGTGAAATAATCAGAGGaa                                                          <  1:866880/141‑1 (MQ=255)

                                                                               aattaatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGaa                                                          <  2:1010023/141‑1 (MQ=255)

                                                                                 ttaatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATc                                                        >  1:633988/1‑141 (MQ=255)

                                                                                 ttaatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATc                                                        >  1:1042317/1‑141 (MQ=255)

                                                                                 ttaatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATAACGTGAAATAATAAGAGGAAtg                                                        >  2:501183/1‑140 (MQ=255)

                                                                                      atTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTg                                                   <  1:53145/141‑1 (MQ=255)

                                                                                      atTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATAGTTTg                                                   >  1:135585/1‑141 (MQ=255)

                                                                                      atTAAACCAAGATAATGTAGGCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCCTAGTACTCCTTGTCCAAAAATCACGTGAGAAAATCAGAGGACTCGGTTg                                                   >  2:282729/1‑141 (MQ=21)

                                                                                        tAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGaa                                                 <  1:277014/141‑1 (MQ=255)

                                                                                        tAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGaa                                                 <  1:734867/141‑1 (MQ=255)

                                                                                        tAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGaa                                                 <  1:1104886/141‑1 (MQ=255)

                                                                                         aaGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAATATCACNTGANANAATCAGAGGAATCGTTTGaaa                                                >  1:928231/1‑141 (MQ=255)

                                                                                          aGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAat                                               <  1:672158/141‑1 (MQ=255)

                                                                                            ccAGGATAATGGAGGCCTAATCGTTCAGAAATACGAAAAATTTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAatca                                             <  2:1040328/141‑1 (MQ=18)

                                                                                             ccagATATTGTATTCATAATCGTTCTGAAATACGTAAAATGTTGTGGAATTCGCGTGGAATAATCAGAGGAATCGCTTGAAAACATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAatcat                                            <  2:314039/138‑1 (MQ=18)

                                                                                                gATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgt                                         >  1:576716/1‑141 (MQ=255)

                                                                                                gATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgt                                         >  1:1275666/1‑141 (MQ=255)

                                                                                                     tGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTaa                                    >  1:1091517/1‑141 (MQ=255)

                                                                                                     tGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTaa                                    >  1:1091558/1‑141 (MQ=255)

                                                                                                         gTCGTAACCGTTCTGAAATACGAAAAAAGTTGTTGAAATCGGGGGAAATAATCAGAGGAATCGTTGGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGATGAATCGTTTGAAATCATCGTAGTAATcgc                                <  1:1146007/141‑1 (MQ=17)

                                                                                                                  gTTCTGAAATACGAAAAATGTTGTGGAAGTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATATTCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATc                       <  1:769950/141‑1 (MQ=255)

                                                                                                                  gTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTCTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATc                       <  1:132263/141‑1 (MQ=255)

                                                                                                                  gTTCTCAAAAACAAAAAATGTTGTGCAAATCGCGTCAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATc                       <  1:485433/141‑1 (MQ=14)

                                                                                                                  cttCAGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATc                       <  1:425739/140‑1 (MQ=255)

                                                                                                                   ttCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCa                      >  2:1147554/1‑141 (MQ=255)

                                                                                                                   ttCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCa                      >  1:448945/1‑141 (MQ=255)

                                                                                                                          aTACGAAAAATGTTGTGGAAATCGCGTGCAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaaa               >  1:325648/1‑141 (MQ=255)

                                                                                                                          aTACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGCGTCGTGTGGAATCATCGTAGTAATCGCGCGAAAATCACGTGaaa               >  1:252111/1‑141 (MQ=255)

                                                                                                                          aTACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaca               >  1:1121306/1‑139 (MQ=255)

                                                                                                                          aTACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGGGaaa               >  1:58471/1‑141 (MQ=255)

                                                                                                                          aTACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGGGAAATAATCAGAGGAAACGTTTGAAATCATCGTAGAAAGCGAGCGGAAAGCCCGGGaaa               >  1:582087/1‑141 (MQ=14)

                                                                                                                            aCGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAaata             >  1:1174022/1‑141 (MQ=255)

                                                                                                                              gAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAaataat           <  1:1114703/141‑1 (MQ=255)

                                                                                                                              gAAAAAGGCTTTGGAAATCGCGTGAAATAATCCAAGGAATCGTCTGTAACGCTCGCAGCAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAaataat           <  1:379013/141‑1 (MQ=11)

                                                                                                                               aaaaaTGTTGTGGAAATCTCGTGAAATAATCATAGGAATCTTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATc          <  1:1129833/141‑1 (MQ=255)

                                                                                                                               aaaaaTGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATc          <  1:711365/141‑1 (MQ=255)

                                                                                                                                 taatcgcgtgGAAATCTCGTGGGATAATCAGGGGAATCGTTTGATATCATCGGAGTAATGGTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCag        <  2:1091558/134‑1 (MQ=1)

                                                                                                                                 aaaTGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCag        <  1:112430/141‑1 (MQ=40)

                                                                                                                                 aaaTGTGGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCag        <  1:162789/141‑1 (MQ=38)

                                                                                                                                   aTGTTGTGGAAATCGCGTGAAATAATCAGAGGAATGGGTTGAAATCATCGTGGTAATCGCGCGAAAATACAGTGAAATCATCAGGGGAATGGTGTGAGACGATCGTAGTGAGCGGGCGAGGATGGTGTGAGATAGTCagag      >  2:514136/1‑141 (MQ=2)

                                                                                                                                   aTGTTGTGGAAATCGCCTGAAATAATCAGAGGAACCGTTTGAAATCATCGTAGTAACCCCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCagag      <  1:1260763/141‑1 (MQ=255)

                                                                                                                                       tgtgGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGaaa                                                >  1:399975/1‑95 (MQ=40)

                                                                                                                                       tgtgGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAGTCGCGCGAACATCACGGGAAATAATCAGAGGAAt  >  1:273571/1‑141 (MQ=255)

                                                                                                                                       tgtgGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGaaa  >  2:1371941/1‑140 (MQ=37)

                                                                                                                                       cgcgtaaaTCGCGTGAAATAATCAGAGGACTCGTTTGAAATCATCGTAGTCATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAAt  <  2:1362545/136‑1 (MQ=2)

GTATCGTTGTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAAT  >  USA300TCH1516_ALE/52349‑52624

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.