| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 52495 = | 115 (0.950) | 146 (1.220) +T |
7/278 | 7.3 | 57.9% | intergenic (+105/‑568) | USA300HOU_RS00215/USA300HOU_RS00220 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 52988 | 99 (0.820) | intergenic (+598/‑75) | USA300HOU_RS00215/USA300HOU_RS00220 | hypothetical protein/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Only 100 of 151 total aligned reads displayed.
TTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/52633‑52495‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACG < USA300TCH1516_ALE/52988‑52858 | TTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTAGTATGTTTTCAAACGATTTCTCTGATTAATTCACGTtt > 2:950286/1‑139 TTCAAACGATTCCTCTAATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGCTTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTATGATTATTTCACGTGt > 1:810397/1‑140 CAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACTATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCCATTACTCCGATGATTTCAAGTGGTTCCTCTGTTTATTTCACGAGATT > 2:171525/1‑141 CAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCCATTTCTACGATGATTTCAAACGGTTCCTCTGATTATTTCACGTGATT > 2:58471/1‑141 AAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTT > 1:1275352/1‑141 AAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATGTTCGCGCGATTACTACGATGATTTCAAACGATCCCTTGGATTATTTCCCGTGATTT > 1:285874/1‑141 AACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTACAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTT > 1:1287408/1‑141 GATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTTCGATATTTTCAAACTATTGCTCTGATTATTTCACGTGATTTTCGg > 1:707520/1‑140 tccccCTGACTATTTTACGTGATTTTCGCGCGATTACTTCGATGATTTCAAACGATTCCCCTGATTTCTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGC < 2:484669/136‑1 CCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTCCGATGTCTTCAAACGATTCCTCTGATTATCTCGCGTTATTTTTGCGCaa > 1:1158872/1‑139 CTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGTTTCCTCTGATTATTTCCCGTTATTTTTACGCGAT > 1:946591/1‑141 CTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGAT > 1:119049/1‑141 CTCTGACTTTTTCACGAGTTTTTCTCGCGATTACTACGATGTTTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGAT < 2:1241284/141‑1 TCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTTACGTGATTTTCGCGCGATTCCTACGATGATTTCAAACGATTCATCTGATTATTTTACATAATTTTCACGCGATa > 1:631681/1‑140 TGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTGTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCGCTGATTATTTCACGTGATTTTCGCGCGATTtc > 1:912636/1‑139 TCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTTGCTCAATTTTTACGATGt > 2:1123207/1‑140 TGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGT < 2:971063/111‑1 GATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTGCTAGAATGATTTCAA > 1:971172/1‑141 GATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAA < 2:664716/141‑1 GATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACAATGATTTCAA > 1:1156823/1‑141 cTTTTCGCGCGTTTACTACCATGGTTTCAACCGCTTCCTCTCATTTTTTCACGTGATTTTCCCGCGATTCCTACGACGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAA < 1:1314136/140‑1 ATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAA > 1:297745/1‑141 ATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAA > 1:513103/1‑141 TTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACG < 1:266139/141‑1 TTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACG < 1:162543/141‑1 TTTCGCGCGATTACTACGAAGATTTCAAACGATTCCTCTGATTATTTCACGTGACTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGTTTTCAAACG > 1:887641/1‑141 TCGCGCGATTACTTCGATGACTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGAT < 1:1053265/141‑1 TCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCACGCGATTACTACGATGATTTCAAAagtt > 1:770346/1‑137 CGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGA < 2:1058973/117‑1 CGCGCGATTACTACGACGACTTCAAACGATTCCTCTGAGTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTACTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATT > 1:762048/1‑141 GCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACTATGATTTCACACGATcc > 2:448945/1‑139 GCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTC > 1:1147554/1‑141 CGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCC > 1:222830/1‑141 cctATTACTACGATATGTTCAAACGATTCCTCTCATTATTTCACGTGATTTTCGCGCGATTTTTACCATTCTTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCT < 1:315993/138‑1 ccATTACTACGATGATTTCAAACGACTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTC < 1:479102/139‑1 ATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTCCGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTTTTACTATTATTTCAAACGTATCCTCTG > 2:169864/1‑141 ATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCACGCGATTTTTACGATGTTTTCAAACGATTCCTCTG > 2:489843/1‑141 ACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTCCGATGATTTCAAACGATTCCTCTCATTATTTCCCGTGATTTTCACGCAATTTCTCCTATGATTTTAAACGTTTTCTCTGATT > 2:818729/1‑141 ACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTAGGATGTTTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCACTCCATTATTACTATGTTTTCAAATGTTTCCTCTGATT > 2:866279/1‑141 ACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCAATTATTACTATGTTTTTAAACGATTTATCTGATT > 2:759792/1‑141 CTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTTTTACGATGTTTTAAACCGATACCTTTGATTA > 2:1042317/1‑141 CTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGTTTTCACACGATTCCTCTGATTA > 1:501183/1‑141 CTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCCGATTATTTCACGTGATTTTCGCGCGATTATTACTATGTTTTTATATGTTTCCTCTGATTA > 2:1130230/1‑141 cccATGATTTCAATCGATTCCTATGATTACTTCACGTGATTTTCGCGCGATTACTACGACGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATT < 1:383854/138‑1 ATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCA > 1:550269/1‑141 TGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGAGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCAC < 2:729401/141‑1 TGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCAATTACTACGATGATTTCAAACGAATCCTCTAATTATCTCACGTGATTTTCACGCGATTTCTACGATGATTGCAAACGCATCCTTTCATTATTTCgg > 2:1262310/1‑139 TGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCACGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCACGCGATTACTACGATTTTTTAACACTTTTCATCTCATTATTTCAg > 2:1333145/1‑140 TTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTCCGATGATTTCAAACGATTCCTCTGATTATTTCACCTGATTTCCGCACCATTTCTAGGATGGTTTTAAACGTTTCCTCTGATTATTTCACctt > 2:553410/1‑138 TTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCG > 1:1371941/1‑141 TTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTATTACGATGTTTTCAAACGTTTCCTTTGATTATTCCACGCGt > 2:1165465/1‑140 TTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAA < 2:1078242/115‑1 TTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCA < 2:651049/114‑1 TTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCA < 1:275971/114‑1 TTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCA < 1:489523/114‑1 TTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATT > 2:1185558/1‑88 TTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATT < 1:1185558/88‑1 TTCAAACGATACCTGTGATTATTTCACGTGATTTTCGCGCNATTACTCCGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCCCGATTCTTANGATCATCGCACACGATTCCCCTTATTATTNCACGCGA > 2:928231/1‑141 TCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAACCGATGCCTCTGATTATTTCACGCGAT < 1:1362545/141‑1 CAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATTATTTTAAACGGTTCCGCTGATTATTTCACACGATT > 2:769262/1‑141 CAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCCATTTCTCCTATTTTTTAAAACGATTCCTATGATTGTTTTACGCGATT > 2:252111/1‑141 ACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGAT < 2:1182837/124‑1 ATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATGACTACGATGATTTCAAACGAGTCCTCTGATTATTTCACGCGATTTACGCG > 2:1362545/1‑141 GATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGAT < 1:519249/91‑1 TGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATT < 1:915947/105‑1 ATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCG > 1:858569/1‑62 ATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCG < 2:858569/62‑1 TTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAAC < 1:32734/86‑1 TTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTA < 1:999869/71‑1 TTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTA > 2:82447/1‑71 TTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTA < 1:82447/71‑1 TTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTG > 2:283456/1‑94 CGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGA < 2:192992/106‑1 CGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGA < 1:1124612/106‑1 CGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATGATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGA > 1:192992/1‑106 GCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACG < 2:1349213/82‑1 GCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACG > 1:601627/1‑82 GCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACG > 1:1349213/1‑82 GCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACG < 2:601627/82‑1 CGATTACTACGATGATTGAAAAGGATTCCTCTGAGTTTTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCTCGCGCTTTTCCCGCGGTTACTACGATGATTTCAAAGGATTCtcc > 1:602885/1‑138 GATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGA < 1:911588/57‑1 ATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGAT < 2:247307/79‑1 ATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGAT < 2:1122368/79‑1 CTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAAC < 1:471524/72‑1 CTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTT < 2:754929/44‑1 TTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCACGCGATTTTTACGATGTTTTCAAACGTTTTCTCTGATTATTTCGCGTGA > 2:1172013/1‑141 TTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATT > 2:199036/1‑66 TCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATT < 2:1277665/65‑1 ACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGAT < 2:429953/69‑1 ATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGAT > 1:111525/1‑79 ATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGAT < 2:111525/79‑1 ATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGAT < 2:563651/79‑1 ATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGAT > 2:50156/1‑79 TTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATT < 1:419015/66‑1 TTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATT < 2:1154318/57‑1 TCTGATTATTTCACGTGATTTTCGCGCGATTACTAC < 1:562318/36‑1 CTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTCCACACCATTACTCCGATGATATCAAACGATTCCCCTGATTATCCCACGAGATTTCCACGCGATTA > 2:1091558/1‑141 GATTATTTCACGTGATTTTCGCGCGATTACTACGAT < 2:568208/36‑1 ttTTTCACGTGTTTTTTGCGCGATTCCTTCGATTTTTTCAATCGGTTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTCCGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACG < 2:327902/139‑1 TGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATT < 1:209397/50‑1 | TTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/52633‑52495‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGATTTTCGCGCGATTACTACG < USA300TCH1516_ALE/52988‑52858 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |