BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	52495 =	115 (0.950)	146 (1.220) +T	7/278	7.3	57.9%	intergenic (+105/‑568)	USA300HOU_RS00215/USA300HOU_RS00220	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 52988	99 (0.820)	146 (1.220) +T	7/278	7.3	57.9%	intergenic (+598/‑75)	USA300HOU_RS00215/USA300HOU_RS00220	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 132 total aligned reads displayed.

TTGTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAA  >  USA300TCH1516_ALE/52355‑52633

ttgttTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATcgc                                                                                                                                            >  1:1172013/1‑141 (MQ=255)

ttgttTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATcgc                                                                                                                                            >  1:991637/1‑141 (MQ=255)

 tgttTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATcgcg                                                                                                                                           <  1:735099/141‑1 (MQ=255)

 tgttTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATcgcg                                                                                                                                           <  2:1092505/141‑1 (MQ=255)

   ttttttAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTATGAAATACGAAAAATGTTGTGGAAATCGCGTg                                                                                                                                         >  2:707520/1‑141 (MQ=255)

    tttttAAAGCATTAGATGCCTTAAAAAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGa                                                                                                                                        >  1:680956/1‑141 (MQ=255)

            gCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCa                                                                                                                                >  1:331177/1‑141 (MQ=255)

            gCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCa                                                                                                                                >  1:1135790/1‑141 (MQ=255)

               ttAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCagag                                                                                                                             <  1:1081000/141‑1 (MQ=255)

               ttAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCagag                                                                                                                             <  1:976277/141‑1 (MQ=255)

                   aTGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAACATGTTATGGAAATCGCTTGACATAATCAGAGGaaa                                                                                                                         >  2:94123/1‑140 (MQ=255)

                    tGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATc                                                                                                                        <  1:581552/141‑1 (MQ=255)

                      ccTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGt                                                                                                                      >  2:1158872/1‑141 (MQ=255)

                       cTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGtt                                                                                                                     <  1:552589/141‑1 (MQ=255)

                       cTTAAAGAAAGAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGtt                                                                                                                     <  1:823120/141‑1 (MQ=255)

                           aaGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGaa                                                                                                                 >  1:868131/1‑141 (MQ=255)

                            aGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGaaa                                                                                                                >  2:946591/1‑141 (MQ=255)

                                aTAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGACATACGAAAATAGTTGTGGAAATCGCGTTAAAGAATCAGGGGTATCGTTTGAAatcat                                                                                                            >  1:1193100/1‑141 (MQ=255)

                                aTAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAatcat                                                                                                            >  1:388129/1‑141 (MQ=255)

                                 tAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAatcatc                                                                                                           >  1:852759/1‑141 (MQ=255)

                                   gTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCgt                                                                                                         >  1:435363/1‑141 (MQ=255)

                                     ttttCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtag                                                                                                       <  2:423856/141‑1 (MQ=255)

                                         cACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAAt                                                                                                   >  1:494872/1‑141 (MQ=255)

                                             gataaTATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg                                                                                               <  1:1321258/138‑1 (MQ=255)

                                             gAAAATATTTATAGATATAATTAAAATTAATTAATCTTACGCCATGATATTGTAGTCTTAATCGTTATAAGATACTAAAAATGTTATGATTTTCGCGTGATATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg                                                                                               <  1:1354297/141‑1 (MQ=21)

                                             gAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGTAAAATGTTGTGGAAATCGCGTGACATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg                                                                                               >  1:77323/1‑141 (MQ=255)

                                             gAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg                                                                                               >  1:285977/1‑141 (MQ=255)

                                             gAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg                                                                                               >  1:823389/1‑141 (MQ=255)

                                             gAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGAAGTaacagcg                                                                                               >  2:1275352/1‑136 (MQ=255)

                                               aaaTATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcgcg                                                                                             >  1:169864/1‑141 (MQ=255)

                                               aaaTATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcgcg                                                                                             >  1:489843/1‑141 (MQ=255)

                                                aaTATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGa                                                                                            <  1:1028247/141‑1 (MQ=255)

                                                      tataGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTCGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCa                                                                                      >  1:941344/1‑141 (MQ=255)

                                                       ataGATATAATTAACAGTAATTAATATTAAGCCAGGATGATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCAc                                                                                     >  1:757977/1‑141 (MQ=255)

                                                       ataGATATAATTAAAATTAATTAATATTAAGCCAGTAGAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTCGTAATCGCGCGAAGATCAc                                                                                     >  1:603002/1‑141 (MQ=255)

                                                       ataGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCAc                                                                                     >  1:447290/1‑141 (MQ=255)

                                                             ataATTAAAATTAATTAAAATTAAGGCAGAATAATGTAGTATTAATTGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaaa                                                                               <  2:447290/141‑1 (MQ=25)

                                                                attaaaattaaTTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAaataa                                                                            >  1:1040328/1‑141 (MQ=255)

                                                                attaaaattaaTTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAaataa                                                                            >  1:1333145/1‑141 (MQ=255)

                                                                attaaaattaaTTAATATTAAGCCAGGATAATGTAGTCTTAATCGTGCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGCGAaataa                                                                            >  1:1262310/1‑141 (MQ=255)

                                                                  taaaattaaTTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATc                                                                          >  1:1042405/1‑141 (MQ=255)

                                                                  taaaattaaTTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATc                                                                          >  1:186685/1‑141 (MQ=255)

                                                                  taaaattaaTTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATc                                                                          >  2:487206/1‑141 (MQ=255)

                                                                    aaattaaTTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGACGATGCGAGTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCag                                                                        >  1:932475/1‑141 (MQ=37)

                                                                         aattaatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGGAATAATCAGAGGAATCGTTTGAAATCATCGTAGAAATCGCTCGAAAATCACGTGAAATAATCAGAGGaa                                                                   <  1:866880/141‑1 (MQ=255)

                                                                         aattaatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGaa                                                                   <  2:1010023/141‑1 (MQ=255)

                                                                          attaatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAAt                                                                  >  1:1123207/1‑141 (MQ=255)

                                                                           ttaatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATc                                                                 >  1:1042317/1‑141 (MQ=255)

                                                                           ttaatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATc                                                                 >  1:633988/1‑141 (MQ=255)

                                                                           ttaatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATAACGTGAAATAATAAGAGGAAtg                                                                 >  2:501183/1‑140 (MQ=255)

                                                                               tatTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGttt                                                             <  1:487206/141‑1 (MQ=255)

                                                                                atTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTg                                                            >  1:605090/1‑141 (MQ=255)

                                                                                atTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTg                                                            <  1:53145/141‑1 (MQ=255)

                                                                                atTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATAGTTTg                                                            >  1:135585/1‑141 (MQ=255)

                                                                                atTAAACCAAGATAATGTAGGCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCCTAGTACTCCTTGTCCAAAAATCACGTGAGAAAATCAGAGGACTCGGTTg                                                            >  2:282729/1‑141 (MQ=21)

                                                                                  tAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGaa                                                          <  1:1104886/141‑1 (MQ=255)

                                                                                  tAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGaa                                                          <  1:277014/141‑1 (MQ=255)

                                                                                   aaGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAATATCACNTGANANAATCAGAGGAATCGTTTGaaa                                                         >  1:928231/1‑141 (MQ=255)

                                                                                       ccagATATTGTATTCATAATCGTTCTGAAATACGTAAAATGTTGTGGAATTCGCGTGGAATAATCAGAGGAATCGCTTGAAAACATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAatcat                                                     <  2:314039/138‑1 (MQ=18)

                                                                                          gATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgt                                                  >  1:1275666/1‑141 (MQ=255)

                                                                                          gATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgt                                                  >  1:576716/1‑141 (MQ=255)

                                                                                               tGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTaa                                             >  1:1091517/1‑141 (MQ=255)

                                                                                               tGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTaa                                             >  1:1091558/1‑141 (MQ=255)

                                                                                                   gTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgc                                         <  1:1146197/141‑1 (MQ=255)

                                                                                                   gTCGTAACCGTTCTGAAATACGAAAAAAGTTGTTGAAATCGGGGGAAATAATCAGAGGAATCGTTGGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGATGAATCGTTTGAAATCATCGTAGTAATcgc                                         <  1:1146007/141‑1 (MQ=17)

                                                                                                            gTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTCTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATc                                <  1:132263/141‑1 (MQ=255)

                                                                                                             ttCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCa                               >  1:448945/1‑141 (MQ=255)

                                                                                                               ttGAAATACGAAAAATGTTGTGGAAACCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACg                             <  1:730681/140‑1 (MQ=255)

                                                                                                               atGAAATAAGAAAAATGTTGTGGAAAGAGCGCGAAATAATGAGGTGATACGTGTGAAAACATACTAATAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACg                             <  2:1051770/140‑1 (MQ=14)

                                                                                                                    aTACGAAAAATGTTGTGGAAATCGCGTGCAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaaa                        >  1:325648/1‑141 (MQ=255)

                                                                                                                    aTACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGCGTCGTGTGGAATCATCGTAGTAATCGCGCGAAAATCACGTGaaa                        >  1:252111/1‑141 (MQ=255)

                                                                                                                    aTACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaaa                        >  1:769262/1‑141 (MQ=255)

                                                                                                                    aTACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaaa                        >  1:171525/1‑141 (MQ=255)

                                                                                                                    aTACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGGGaaa                        >  1:58471/1‑141 (MQ=255)

                                                                                                                    aTACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGGGAAATAATCAGAGGAAACGTTTGAAATCATCGTAGAAAGCGAGCGGAAAGCCCGGGaaa                        >  1:582087/1‑141 (MQ=14)

                                                                                                                      aCGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAaata                      >  1:1174022/1‑141 (MQ=255)

                                                                                                                        gAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAaataat                    <  1:1114703/141‑1 (MQ=255)

                                                                                                                        gAAAAAGGCTTTGGAAATCGCGTGAAATAATCCAAGGAATCGTCTGTAACGCTCGCAGCAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAaataat                    <  1:379013/141‑1 (MQ=11)

                                                                                                                         aaaaaTGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATc                   <  1:711365/141‑1 (MQ=255)

                                                                                                                           taatcgcgtgGAAATCTCGTGGGATAATCAGGGGAATCGTTTGATATCATCGGAGTAATGGTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCag                 <  2:1091558/134‑1 (MQ=1)

                                                                                                                           aaaTGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCag                 <  1:112430/141‑1 (MQ=40)

                                                                                                                             aTGTTGTGGAAATCGCGTGAAATAATCAGAGGAATGGGTTGAAATCATCGTGGTAATCGCGCGAAAATACAGTGAAATCATCAGGGGAATGGTGTGAGACGATCGTAGTGAGCGGGCGAGGATGGTGTGAGATAGTCagag               >  2:514136/1‑141 (MQ=2)

                                                                                                                             aTGTTGTGGAAATCGCCTGAAATAATCAGAGGAACCGTTTGAAATCATCGTAGTAACCCCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCagag               <  1:1260763/141‑1 (MQ=255)

                                                                                                                                 tgtgGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGaaa                                                         >  1:399975/1‑95 (MQ=40)

                                                                                                                                 tgtgGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAGTCGCGCGAACATCACGGGAAATAATCAGAGGAAt           >  1:273571/1‑141 (MQ=255)

                                                                                                                                 tgtgGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGaaa           >  2:1371941/1‑140 (MQ=37)

                                                                                                                                 tgtgGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAAt           >  1:553410/1‑141 (MQ=37)

                                                                                                                                 cgcgtaaaTCGCGTGAAATAATCAGAGGACTCGTTTGAAATCATCGTAGTCATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAAt           <  2:1362545/136‑1 (MQ=2)

                                                                                                                                       aaTCGTGTGAAATAATCAGCGGAACCGTTTAAAATAATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTg     <  2:769262/141‑1 (MQ=11)

                                                                                                                                       aaTCGCGTAAAACAATCATAGGAATCGTTTTAAAAAATAGGAGAAATGGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTg     <  2:252111/141‑1 (MQ=11)

                                                                                                                                        aTCGCGTGAAATAATCAGAGGCATCGGTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGa    >  1:1362545/1‑141 (MQ=17)

                                                                                                                                        aTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAAt                                                                  <  1:111525/79‑1 (MQ=34)

                                                                                                                                        aTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAAt                                                                  >  2:563651/1‑79 (MQ=34)

                                                                                                                                        aTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAAt                                                                  <  2:50156/79‑1 (MQ=34)

                                                                                                                                        aTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAAt                                                                  >  2:111525/1‑79 (MQ=35)

                                                                                                                                        aTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGa    >  2:1156336/1‑141 (MQ=32)

                                                                                                                                         tCGCGTGNAATAATAAGGGGAATCGTGTGCGATGATCNTAAGAATCGGGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGGAGTAATNGCGCGAAAATCACGTGAAATAATCACAGGTATCGTTTGaa   <  2:928231/141‑1 (MQ=11)

                                                                                                                                         tCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcgcg                                      >  1:1124612/1‑106 (MQ=32)

                                                                                                                                         acgcgTGGAATAATCAAAGGAAACGTTTGAAAACATCGTAATAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGaa   <  2:1165465/140‑1 (MQ=11)

                                                                                                                                          cgcgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGaaa  <  1:1371941/141‑1 (MQ=31)

TTGTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAA  >  USA300TCH1516_ALE/52355‑52633

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.