| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 842626 | 95 (0.790) | 3 (0.030) | 3/264 | 9.2 | 3.1% | intergenic (+12/‑650) | uvrA/hprK | UvrABC system protein A/HPr kinase/phosphorylase |
| ? | USA300TCH1516_ALE | = 842653 | 99 (0.870) | intergenic (+39/‑623) | uvrA/hprK | UvrABC system protein A/HPr kinase/phosphorylase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGGTAGTGGCGGTGGTACTATTGTTGCGACTGGCACACCCGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/842485‑842626‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagaagCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTAAATACTTTCCTGTATATGATGACTTTGTCTGAGCAATATCTTCGGGTGTGCCAG < USA300TCH1516_ALE/842653‑842514 TGGTAGTGGCGGTGGTACTATTGTTGCGACTGGCACACCCGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAA > 1:1161837/1‑141TGGTAGTGGCGGTGGTACTATTGTTGCGACTGGCACACCCGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAA > 1:1302531/1‑141 GGTAGTGGCGGTGGTACTATTGTTGCGACTGGCACACCCGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAG > 2:411337/1‑141 GGTAGTGGCGGTGGTACTATTGTTGCGACTGGCACACCCGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAG > 2:465388/1‑141 AGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTT < 2:1251741/141‑1 GGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTC > 2:687771/1‑141 GAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTAAATACTTTCC < 1:687771/141‑1 AAAGAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTAAATACTTTCCTGTATATGATGACTTTGTCTGAGCAATATCTTCGGGTG < 2:450305/141‑1 gtAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTAAATACTTTCCTGTATATGATGACTTTGTCTGAGCAATATCTTCGGGTGTGC < 2:1113163/139‑1 GAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTAAATACTTTCCTGTATATGATGACTTTGTCTGAGCAATATCTTCGGGTGTGC > 1:1173389/1‑141 GAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTAAATACTTTCCTGTATATGATGACTTTGTCTGAGCAATATCTTCGGGTGTGC > 1:693817/1‑141 GAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTAAATACTTTCCTGTATATGATGACTTTGTCTGAGCAATATCTTCGGGTGTGC < 2:398393/141‑1 GAAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTAAATACTTTCCTGTATATGATGACTTTGTCTGAGCAATATCTTCGGGTGTGC < 2:855513/141‑1 AAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCTTTTAAGTACTACTTTTAAATACTTTCCCGTATATGATGACTTTGTCTGCGCAATATCTTCGGGTGTGCC > 2:119299/1‑141 AAGCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTAGTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTAAATACTTTCCTGTATATGATGACTTTGTCTGAGCAATATCTTCGGGTGTGCC > 2:522786/1‑141 GCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTAAATACTTTCCTGTATATGATGACTTTGTCTGAGCAATATCTTCGGGTGTGCCAG > 1:1259527/1‑141 TGGTAGTGGCGGTGGTACTATTGTTGCGACTGGCACACCCGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/842485‑842626‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagaagCGAAGGATAAATTTATAACATCCTTCACTTCTTTTAATCTTATTTATCTTCAGTATTTTGTTTATCTCGTTCAAGTACTTCTTTTAAATACTTTCCTGTATATGATGACTTTGTCTGAGCAATATCTTCGGGTGTGCCAG < USA300TCH1516_ALE/842653‑842514 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |