New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 842626	95 (0.790)	3 (0.030)	3/264	9.2	3.1%	intergenic (+12/‑650)	uvrA/hprK	UvrABC system protein A/HPr kinase/phosphorylase
	?	USA300TCH1516_ALE	= 842653	99 (0.870)					intergenic (+39/‑623)	uvrA/hprK	UvrABC system protein A/HPr kinase/phosphorylase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGTAGTGGCGGTGGTACTATTGTTGCGACTGGCACACCCGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGG  >  USA300TCH1516_ALE/842486‑842764                                                                                                                                             |                                                                                                                                           ggtAGTGGCGGTGGTACTATTGTTGCGACTGGCACACCCGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAaagaag                                                                                                                                            >  2:411337/1‑141 (MQ=255) ggtAGTGGCGGTGGTACTATTGTTGCGACTGGCACACCCGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAaagaag                                                                                                                                            >  2:465388/1‑141 (MQ=255)  gtAGTGGCGGTGGTACTATTGTTGCGACTGGCACACCCGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGt                                                                                                                                           >  2:1039119/1‑141 (MQ=255)  gtAGTGGCGGTGGTACTATTGTTGCGACTGGCACAACCGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGt                                                                                                                                           <  1:797532/141‑1 (MQ=255)  gtAGTGGCCGTGGTACGATTGTTGCGACTGGCACACCCGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGt                                                                                                                                           <  2:1237850/141‑1 (MQ=255)     gTGGCGGTGGTACTATTGTTGCGACTGGCACACCCGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGaa                                                                                                                                        >  1:422484/1‑141 (MQ=255)      tGGCGGTGGTACTATTGTTGTGACTGGAACACCCGAAGATATTGCTCAGACAAAGTCATCGTATACAGGAAAGTATTTAAAAGAAGAACTAGCACGAGAAAAACAAAAAAATGAAGATAAATAAGATTCAAAAAAGTGAAg                                                                                                                                       >  2:340505/1‑141 (MQ=255)      tGGCGGTGGTACTATTGTTGCGACTGGCACACCCGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAg                                                                                                                                       >  2:733785/1‑141 (MQ=255)       ggCGGTGGTACTATTGTTGCGACTGGCACACCCGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAgg                                                                                                                                      >  2:1194700/1‑141 (MQ=255)              gtACTATTGTTGCGACTGGCACACCCGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTtat                                                                                                                               <  2:389138/141‑1 (MQ=255)                aCTATTGTTGCGACTGGCACACCCGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATaa                                                                                                                             >  1:961662/1‑141 (MQ=255)                aCTATTGTTGCGACTGGCACACCCGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATaa                                                                                                                             >  1:1256404/1‑141 (MQ=255)                           gACTGGCACACCCGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTc                                                                                                                  >  1:91225/1‑141 (MQ=255)                             cTGGCACACCCGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGc                                                                                                                <  1:1259527/141‑1 (MQ=255)                               ggCACACCCGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAACTAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGctt                                                                                                              <  2:522786/141‑1 (MQ=255)                               ggCACACCCGAAGATATTGCGCAGACAAAGTCATCATATACGGGAAAGTATTTAAAAGTAGTACTTAAAAGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGctt                                                                                                              <  2:119299/141‑1 (MQ=255)                                gCACACCCGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGcttc                                                                                                             <  1:693817/141‑1 (MQ=255)                                gCACACCCGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGcttc                                                                                                             >  2:398393/1‑141 (MQ=255)                                gCACACCCGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGcttc                                                                                                             >  2:855513/1‑141 (MQ=255)                                gCACACCCGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGcttc                                                                                                             <  1:1173389/141‑1 (MQ=255)                                gCACACCCGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGctac                                                                                                             >  2:1113163/1‑139 (MQ=255)                                   cacCCGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCttt                                                                                                          >  2:450305/1‑141 (MQ=255)                                      ccGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTtta                                                                                                       >  2:1106030/1‑141 (MQ=255)                                       ggAAGATATTGCTCACACAAAGTCAGCATATACATGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACACAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCCTTttat                                                                                                      <  2:516125/140‑1 (MQ=255)                                        gAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTttatt                                                                                                     <  2:518815/141‑1 (MQ=255)                                         aaGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTttatta                                                                                                    >  2:334440/1‑141 (MQ=255)                                               ttGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTGTCCTTGGCTGCTTTTTATTAATTTAg                                                                                              >  1:812199/1‑141 (MQ=255)                                               ttGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAg                                                                                              >  2:408668/1‑141 (MQ=255)                                               ttGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTAATTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTGATCCTTCGATTCTTTTTATTAATTTat                                                                                              >  2:1034814/1‑140 (MQ=255)                                                 gCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTCTCCTTCGCTTCTTTTTATTAATTTAGTa                                                                                            >  1:455922/1‑141 (MQ=255)                                                 gCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTa                                                                                            <  1:1039119/141‑1 (MQ=255)                                                 gCTCAGACAAAGTCATCATATACACGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTa                                                                                            >  1:875746/1‑141 (MQ=255)                                                 gCTCAGACAAAGGCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTa                                                                                            >  1:1304202/1‑141 (MQ=255)                                                    cAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATg                                                                                         >  2:1180407/1‑141 (MQ=255)                                                    cAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATg                                                                                         >  2:392201/1‑141 (MQ=255)                                                      aaCAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGaa                                                                                       <  2:613558/140‑1 (MQ=255)                                                       aCAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGatt                                                                                      >  2:763704/1‑139 (MQ=255)                                                       aCAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAt                                                                                      <  2:983191/141‑1 (MQ=255)                                                       aCAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAt                                                                                      >  1:585646/1‑141 (MQ=255)                                                          aaGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAGTACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATATATCCTTCGCTTATCTTTATTACTTTAGTATTGAAtagt                                                                                   >  2:275105/1‑141 (MQ=255)                                                            gTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTACTGAAtagtag                                                                                 >  1:75580/1‑141 (MQ=255)                                                            gTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtagtag                                                                                 >  1:728242/1‑141 (MQ=255)                                                            gTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATCAAtagtag                                                                                 >  1:690100/1‑141 (MQ=255)                                                            gTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAAAAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTCGTAATGCAtagtag                                                                                 >  1:30617/1‑141 (MQ=255)                                                                        aGGAAAGTATTTAACAGCAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATg                                                                     >  2:295270/1‑141 (MQ=255)                                                                        aGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATg                                                                     >  1:43273/1‑141 (MQ=255)                                                                        aGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATg                                                                     >  2:1262893/1‑141 (MQ=255)                                                                        aGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATg                                                                     >  1:504/1‑141 (MQ=255)                                                                        aGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTAAAGGATGTTAGAAATTTATCCTTCGCTGCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATg                                                                     >  2:405345/1‑141 (MQ=255)                                                                           aaaGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGt                                                                  <  2:446869/141‑1 (MQ=255)                                                                           aaaGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGt                                                                  <  1:1139689/141‑1 (MQ=255)                                                                           aaaGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGAGTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGt                                                                  <  1:149453/141‑1 (MQ=255)                                                                           aaaGTATTTAAAAGAAGTAATTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGt                                                                  <  2:446860/141‑1 (MQ=255)                                                                           aaaGTATTTAAAAGAAGGACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGt                                                                  <  1:543174/141‑1 (MQ=255)                                                                           aaaGTATTTAAAAGAACTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGATTGATGTTGTTAATTTATTTTTGTCTGCTTTTTCTATATTTATTAATGAATTGTAGACAGTATAGATGCGt                                                                  <  2:619974/141‑1 (MQ=255)                                                                           aaaGTATTTAAAAGAAATACTTGAACGAGAAAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGt                                                                  <  2:196690/141‑1 (MQ=255)                                                                              atATTTAAAAGAAGTACTTGAAAGAGACAAACAAAATACTGCAGAAAAATACGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTaaa                                                               <  1:283505/140‑1 (MQ=255)                                                                                aTTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTaaaaa                                                             >  2:1116739/1‑141 (MQ=255)                                                                                 tttAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAg                                                            <  1:334440/141‑1 (MQ=255)                                                                                 tttAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAg                                                            <  1:217588/141‑1 (MQ=255)                                                                                   tAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGaa                                                          >  2:1234683/1‑141 (MQ=255)                                                                                     aaaGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAAtt                                                        <  2:1027434/141‑1 (MQ=255)                                                                                     aaaGAAGTACCTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAAtt                                                        <  2:1367632/141‑1 (MQ=255)                                                                                          agTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGtt                                                   <  2:131445/141‑1 (MQ=255)                                                                                          agTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGtt                                                   <  2:1329385/141‑1 (MQ=255)                                                                                          agTACTTGAAAGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGtt                                                   <  2:768701/141‑1 (MQ=255)                                                                                           gTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTa                                                  <  1:1262893/141‑1 (MQ=255)                                                                                             aCTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAATAGATGCGTAAAAAGAATTATGTTAAg                                                <  2:847064/141‑1 (MQ=255)                                                                                             aCTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAg                                                <  2:112016/141‑1 (MQ=255)                                                                                               ttGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGAt                                              <  1:1180407/141‑1 (MQ=255)                                                                                               ttGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGAt                                              <  1:392201/141‑1 (MQ=255)                                                                                                tGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGaga                                             >  1:644146/1‑139 (MQ=255)                                                                                                tGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATa                                             >  2:1270423/1‑141 (MQ=255)                                                                                                tGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATa                                             >  1:999392/1‑141 (MQ=255)                                                                                                    cGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGt                                         >  1:532498/1‑141 (MQ=255)                                                                                                      agaTAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAAT‑TATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTATGATAGGGTCaa                                      >  2:1089829/1‑141 (MQ=255)                                                                                                       gaTAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGGCGGTTTAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCaa                                      >  1:1292231/1‑141 (MQ=255)                                                                                                       gaTAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCaa                                      <  1:1132897/141‑1 (MQ=255)                                                                                                       gaTAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCaa                                      <  2:721188/141‑1 (MQ=255)                                                                                                       aaTAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCaa                                      <  1:187552/140‑1 (MQ=255)                                                                                                         tAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAATATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATc                                    <  1:411337/141‑1 (MQ=255)                                                                                                         tAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATc                                    <  1:465388/141‑1 (MQ=255)                                                                                                         aaaaCAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATc                                    <  2:1091729/140‑1 (MQ=255)                                                                                                            aCAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTag                                 <  2:423399/141‑1 (MQ=255)                                                                                                                aaTATTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCTTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGagta                             <  1:570133/141‑1 (MQ=255)                                                                                                                aaTACTGAAGATAAATTAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGagta                             >  1:810731/1‑141 (MQ=255)                                                                                                                aaTACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGagta                             >  1:217988/1‑141 (MQ=255)                                                                                                                aaTACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGagta                             >  1:1205630/1‑141 (MQ=255)                                                                                                                 aTACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGagtag                            >  1:24715/1‑141 (MQ=255)                                                                                                                 aTACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATACTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGCTCAATCTAGagtag                            <  2:936451/141‑1 (MQ=255)                                                                                                                       aaGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAGGATAGGGTCAATCTAGAGTAGTTAAAc                      >  1:56488/1‑141 (MQ=255)                                                                                                                       aaGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATGAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTCAAc                      >  2:1075138/1‑141 (MQ=255)                                                                                                                          ataaataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTCAAAAGAACTATGTTAAGATAGGGTCAATCTATAGTAGTTAAACATa                   <  2:1146761/141‑1 (MQ=255)                                                                                                                                aaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGa             >  1:1374253/1‑141 (MQ=255)                                                                                                                                  gATTAAAAGTAGTGAAGGATTTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAAc           <  2:281001/141‑1 (MQ=255)                                                                                                                                           aagTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTgg  <  1:1334358/141‑1 (MQ=255)                                                                                                                                           aagTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTgg  <  1:855513/141‑1 (MQ=255)                                                                                                                                             |                                                                                                                                           GGTAGTGGCGGTGGTACTATTGTTGCGACTGGCACACCCGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGG  >  USA300TCH1516_ALE/842486‑842764

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.