BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 842626	95 (0.790)	3 (0.030)	3/264	9.2	3.1%	intergenic (+12/‑650)	uvrA/hprK	UvrABC system protein A/HPr kinase/phosphorylase
*	?	USA300TCH1516_ALE	= 842653	99 (0.870)	3 (0.030)	3/264	9.2	3.1%	intergenic (+39/‑623)	uvrA/hprK	UvrABC system protein A/HPr kinase/phosphorylase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 108 total aligned reads displayed.

CTGGCACACCCGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCACTAA  >  USA300TCH1516_ALE/842514‑842789

cTGGCACACCCGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGc                                                                                                                                         <  1:1259527/141‑1 (MQ=255)

  ggCACACCCGAAGATATTGCGCAGACAAAGTCATCATATACGGGAAAGTATTTAAAAGTAGTACTTAAAAGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGctt                                                                                                                                       <  2:119299/141‑1 (MQ=255)

   gCACACCCGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGcttc                                                                                                                                      >  2:855513/1‑141 (MQ=255)

   gCACACCCGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGcttc                                                                                                                                      <  1:1173389/141‑1 (MQ=255)

   gCACACCCGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGcttc                                                                                                                                      >  2:398393/1‑141 (MQ=255)

   gCACACCCGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGcttc                                                                                                                                      <  1:693817/141‑1 (MQ=255)

   gCACACCCGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGctac                                                                                                                                      >  2:1113163/1‑139 (MQ=255)

      cacCCGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCttt                                                                                                                                   >  2:450305/1‑141 (MQ=255)

         ccGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTtta                                                                                                                                >  2:1106030/1‑141 (MQ=255)

          ggAAGATATTGCTCACACAAAGTCAGCATATACATGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACACAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCCTTttat                                                                                                                               <  2:516125/140‑1 (MQ=255)

           gAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTttatt                                                                                                                              <  2:518815/141‑1 (MQ=255)

                  ttGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTGTCCTTGGCTGCTTTTTATTAATTTAg                                                                                                                       >  1:812199/1‑141 (MQ=255)

                  ttGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAg                                                                                                                       >  2:408668/1‑141 (MQ=255)

                  ttGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTAATTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTGATCCTTCGATTCTTTTTATTAATTTat                                                                                                                       >  2:1034814/1‑140 (MQ=255)

                    gCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTCTCCTTCGCTTCTTTTTATTAATTTAGTa                                                                                                                     >  1:455922/1‑141 (MQ=255)

                    gCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTa                                                                                                                     <  1:1039119/141‑1 (MQ=255)

                    gCTCAGACAAAGTCATCATATACACGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTa                                                                                                                     >  1:875746/1‑141 (MQ=255)

                       cAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATg                                                                                                                  >  2:1180407/1‑141 (MQ=255)

                       cAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATg                                                                                                                  >  2:392201/1‑141 (MQ=255)

                         aaCAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGaa                                                                                                                <  2:613558/140‑1 (MQ=255)

                          aCAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGatt                                                                                                               >  2:763704/1‑139 (MQ=255)

                          aCAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAt                                                                                                               >  1:585646/1‑141 (MQ=255)

                             aaGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAGTACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATATATCCTTCGCTTATCTTTATTACTTTAGTATTGAAtagt                                                                                                            >  2:275105/1‑141 (MQ=255)

                               gTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTACTGAAtagtag                                                                                                          >  1:75580/1‑141 (MQ=255)

                               gTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAAtagtag                                                                                                          >  1:728242/1‑141 (MQ=255)

                               gTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATCAAtagtag                                                                                                          >  1:690100/1‑141 (MQ=255)

                               gTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAAAAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTCGTAATGCAtagtag                                                                                                          >  1:30617/1‑141 (MQ=255)

                                           aGGAAAGTATTTAACAGCAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATg                                                                                              >  2:295270/1‑141 (MQ=255)

                                           aGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATg                                                                                              >  1:43273/1‑141 (MQ=255)

                                           aGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATg                                                                                              >  2:1262893/1‑141 (MQ=255)

                                           aGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATg                                                                                              >  1:504/1‑141 (MQ=255)

                                           aGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTAAAGGATGTTAGAAATTTATCCTTCGCTGCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATg                                                                                              >  2:405345/1‑141 (MQ=255)

                                              aaaGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGt                                                                                           <  2:446869/141‑1 (MQ=255)

                                              aaaGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGt                                                                                           <  1:1139689/141‑1 (MQ=255)

                                              aaaGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGAGTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGt                                                                                           <  1:149453/141‑1 (MQ=255)

                                              aaaGTATTTAAAAGAAGTAATTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGt                                                                                           <  2:446860/141‑1 (MQ=255)

                                              aaaGTATTTAAAAGAAGGACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGt                                                                                           <  1:543174/141‑1 (MQ=255)

                                              aaaGTATTTAAAAGAACTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGATTGATGTTGTTAATTTATTTTTGTCTGCTTTTTCTATATTTATTAATGAATTGTAGACAGTATAGATGCGt                                                                                           <  2:619974/141‑1 (MQ=255)

                                              aaaGTATTTAAAAGAAATACTTGAACGAGAAAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGt                                                                                           <  2:196690/141‑1 (MQ=255)

                                                 atATTTAAAAGAAGTACTTGAAAGAGACAAACAAAATACTGCAGAAAAATACGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTaaa                                                                                        <  1:283505/140‑1 (MQ=255)

                                                   aTTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTaaaaa                                                                                      >  2:1116739/1‑141 (MQ=255)

                                                    tttAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAg                                                                                     <  1:334440/141‑1 (MQ=255)

                                                    tttAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAg                                                                                     <  1:217588/141‑1 (MQ=255)

                                                        aaaGAAGTACCTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAAtt                                                                                 <  2:1367632/141‑1 (MQ=255)

                                                             agTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGtt                                                                            <  2:131445/141‑1 (MQ=255)

                                                             agTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGtt                                                                            <  2:1329385/141‑1 (MQ=255)

                                                             agTACTTGAAAGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGtt                                                                            <  2:768701/141‑1 (MQ=255)

                                                              gTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTa                                                                           <  1:1262893/141‑1 (MQ=255)

                                                                aCTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAATAGATGCGTAAAAAGAATTATGTTAAg                                                                         <  2:847064/141‑1 (MQ=255)

                                                                aCTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAg                                                                         <  2:112016/141‑1 (MQ=255)

                                                                  ttGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGAt                                                                       <  1:1180407/141‑1 (MQ=255)

                                                                   tGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGaga                                                                      >  1:644146/1‑139 (MQ=255)

                                                                   tGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATa                                                                      >  2:1270423/1‑141 (MQ=255)

                                                                   tGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATa                                                                      >  1:999392/1‑141 (MQ=255)

                                                                       cGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGt                                                                  >  1:532498/1‑141 (MQ=255)

                                                                         agaTAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAAT‑TATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTATGATAGGGTCaa                                                               >  2:1089829/1‑141 (MQ=255)

                                                                          gaTAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGGCGGTTTAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCaa                                                               >  1:1292231/1‑141 (MQ=255)

                                                                          gaTAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCaa                                                               <  2:721188/141‑1 (MQ=255)

                                                                          gaTAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCaa                                                               <  1:1132897/141‑1 (MQ=255)

                                                                          aaTAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCaa                                                               <  1:187552/140‑1 (MQ=255)

                                                                            tAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAATATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATc                                                             <  1:411337/141‑1 (MQ=255)

                                                                            tAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATc                                                             <  1:465388/141‑1 (MQ=255)

                                                                            aaaaCAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATc                                                             <  2:1091729/140‑1 (MQ=255)

                                                                               aCAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTag                                                          <  2:423399/141‑1 (MQ=255)

                                                                                   aaTATTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCTTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGagta                                                      <  1:570133/141‑1 (MQ=255)

                                                                                   aaTACTGAAGATAAATTAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGagta                                                      >  1:810731/1‑141 (MQ=255)

                                                                                   aaTACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGagta                                                      >  1:217988/1‑141 (MQ=255)

                                                                                   aaTACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGagta                                                      >  1:1205630/1‑141 (MQ=255)

                                                                                    aTACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGagtag                                                     >  1:24715/1‑141 (MQ=255)

                                                                                    aTACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATACTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGCTCAATCTAGagtag                                                     <  2:936451/141‑1 (MQ=255)

                                                                                          aaGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAGGATAGGGTCAATCTAGAGTAGTTAAAc                                               >  1:56488/1‑141 (MQ=255)

                                                                                          aaGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATGAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTCAAc                                               >  2:1075138/1‑141 (MQ=255)

                                                                                             ataaataaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTCAAAAGAACTATGTTAAGATAGGGTCAATCTATAGTAGTTAAACATa                                            <  2:1146761/141‑1 (MQ=255)

                                                                                                   aaGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGa                                      >  1:1374253/1‑141 (MQ=255)

                                                                                                     gATTAAAAGTAGTGAAGGATTTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAAc                                    <  2:281001/141‑1 (MQ=255)

                                                                                                              aagTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTgg                           <  1:1334358/141‑1 (MQ=255)

                                                                                                              aagTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTgg                           <  1:855513/141‑1 (MQ=255)

                                                                                                                 tGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGAc                        <  2:728242/141‑1 (MQ=255)

                                                                                                                  gAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTGTATAAGGATATGGTCAATATGGGGTAGTTAAACATAAATCGACCTGGGAGTGGGACa                       <  2:1319697/141‑1 (MQ=255)

                                                                                                                  gAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACa                       <  2:420399/141‑1 (MQ=255)

                                                                                                                    aGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGa                     >  1:915902/1‑141 (MQ=255)

                                                                                                                    aGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGa                     >  2:1206751/1‑141 (MQ=255)

                                                                                                                       actgtataAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAAt                  <  2:812199/137‑1 (MQ=255)

                                                                                                                       aTGTTAAAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAAt                  <  1:1034814/141‑1 (MQ=255)

                                                                                                                          ttATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATCGGGGCACTCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATggt               >  2:778985/1‑139 (MQ=255)

                                                                                                                          ttATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGAt               >  1:838003/1‑141 (MQ=255)

                                                                                                                            ataAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATaa             >  1:46523/1‑141 (MQ=255)

                                                                                                                              aaaTTGATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAg           <  1:1194700/141‑1 (MQ=255)

                                                                                                                                  ttagcattCGATTGTTATTATTAAATAAGTAATGAATAGTAGAAAAAAAAGATGGGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATc       <  2:313311/135‑1 (MQ=255)

                                                                                                                                  ttATCTTTCGCTTGTTTTTATTAATTGAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATc       <  2:1196629/141‑1 (MQ=255)

                                                                                                                                   tATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAACGATGCGTAAAAAGAATTATGGTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCa      >  2:1246687/1‑141 (MQ=255)

                                                                                                                                   tATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCa      >  2:420746/1‑141 (MQ=255)

                                                                                                                                   tATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCa      >  1:222348/1‑141 (MQ=255)

                                                                                                                                     tCCTTCGCTTCTTTTTATTAATTTTGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCACt    <  1:733785/141‑1 (MQ=255)

                                                                                                                                     tCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCACt    <  2:739966/141‑1 (MQ=255)

                                                                                                                                     tCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCACt    >  1:1070717/1‑141 (MQ=255)

                                                                                                                                     tCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCACt    <  2:426024/141‑1 (MQ=255)

                                                                                                                                     tCCTTCGCTTCTTATTATGAATTTTGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGTGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCACt    <  1:340505/141‑1 (MQ=255)

                                                                                                                                      ccTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCACTa   <  1:495071/141‑1 (MQ=255)

                                                                                                                                       cTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCACTaa  >  1:1064342/1‑141 (MQ=255)

CTGGCACACCCGAAGATATTGCTCAGACAAAGTCATCATATACAGGAAAGTATTTAAAAGAAGTACTTGAACGAGATAAACAAAATACTGAAGATAAATAAGATTAAAAGAAGTGAAGGATGTTATAAATTTATCCTTCGCTTCTTTTTATTAATTTAGTAATGAATAGTAGAAAGAAAAGATGCGTAAAAAGAATTATGTTAAGATAGGGTCAATCTAGAGTAGTTAAACATAAATCGAACTGGGAGTGGGACAGAAATGATAAAGAATCACTAA  >  USA300TCH1516_ALE/842514‑842789

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.