| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2406948 = | 167 (1.380) | 8 (0.070) | 3/266 | 9.3 | 5.0% | coding (613/1716 nt) | ureC | Urease subunit alpha |
| ? | USA300TCH1516_ALE | 2406995 = | 144 (1.250) | coding (660/1716 nt) | ureC | Urease subunit alpha | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTATCTGCATGTAATGCAATTTGAACATCAAATTCATCAGCAACATCTAATGCATGACTCAAAGCAGATGGTGTTGCACCCCAGTCTTCATGTACTTTTAATCCAATTGCTCCGGCATTGATTTGTTCAATGAGTGCAGTTGGATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2407093‑2406948‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggattAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGGATTTATGGAAGACACAATGGCTGC > USA300TCH1516_ALE/2406995‑2407132 GTATCTGCATGTAATGCAATTTGAACATCAAATTCATCAGCAACATCTAATGCATGACTCAAAGCAGATGGTGTTGCACCCCAGTCTTCATGTACTTTTAATCCAATTGCTCCGGCATTGATTTGTTCGATGAGTGCAGTT > 2:1237032/1‑141GTATCTGCATGTAATGCAATTTGAACATCAAATTCATCAGCAACATCTAATGCATGACTCAAAGCAGATGGTGTTGCACCCCAGTCTTCATGTACTTTTAATCCAATTGCTCCGGCATTGATTTGTTCAATGAGTGCAGTT > 2:1252514/1‑141GTATCTGCATGTAATGCAATTTGAACATCAAATTCATCAGCAACATCTAATGCATGACTCAAAGCAGATGGTGTTGCACCCCAGTATTCATGTACTCTTAATCCAATTGCTCCGGCATTGATTTGTTCAATGAGTGCAGTT > 2:618655/1‑141 ATCTGCATGTAATGCAATTTGATCATCAAATTCATCAGCAACATCTAATGCATGACTCAAAGCAGATGGTGTTGCACCCCAGTCTTCATGTACTTTTAATCCAATTGCTCCGGCATTGATTTGTTCAATGAGTGCAGTTGG < 2:340507/141‑1 ATCTGCATGTAATGCAATTTGAACATCAAATTCATCAGCAACATCTAATGCATGACTCAAAGCAGATGGTGTTGCACCCCAGTCTTCATGTACTTTTAATCCAATTGCTCCGGCATTGATTTGTTCAATGAGTGCAGTTGG < 2:473055/141‑1 ATCTGCATGTAATGCAATTTGAACATCAAATTCATCAGCAACATCTAATGCATGACTCAAAGCAGATGGTGTTGCACCCCAGTCTTCATGTACTTTTAATCCAATTGCTCCGGCATTGATTTGTTCAATGAGTGCAGTTGG < 1:464451/141‑1 ATCTGCATGTAATGCAATTTGAACATCAAATTCATCAGCAACATCTAATGCATGACTCAAAGCAGATGGTGTTGCACCCCAGTCTTCATGTACTTTTAATCCAATTGCTCCGGCATTGATTTGTTCAATGAGTGCAGTTGG < 1:723076/141‑1 TCTGCATGTAATGCAATTTGAACATCAAATTCATCAGCAACATCTAATGCATGACTCAAAGCAGATGGTGTTGCACCCCAGTCTTCATGTACTTTTAATCCAATTGCTCCGGCATTGATTTGTTCAATGAGTGCAGTTGGA > 2:808321/1‑141 CTGCATGTAATGCAATTTGAACATCAAATTCATCAGCAACATCTAATGCATGACTCAAAGCAGATGGTGTTGCACCCCAGTCTTCATGTACTTTTAATCCAATTGCTCCGGCATTGATTTGTTCAATGAGTGCAGTTGGAT < 1:1147530/141‑1 TGCATGTAATGCAATTTGAACATCAAATTCATCAGCAACATCTAATGCATGACTCAAAGCAGATGGTGTTGCACCCCAGTCTTCATGTACTTTTAATCCAATTGCTCCGGCATTGATTTGTTCAATGAGTGCAGTTGGATT > 1:1331074/1‑141 AATTGCTCCGGCATTGATTTGTTCAATGAGTGCAGTTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATAC > 1:510888/1‑141 AATTGCTCCGGCATTGATTTGTTCAATGAGTGCAGTTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTAAATGCAGCTAC > 2:1141466/1‑141 ATTGCTCCGGCATTGATTTGTTCAATGAGTGCAGTTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACT > 1:317700/1‑141 ATTGCTCCGGCATTGATTTGTTCAATGAGTGCAGTTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACT > 1:317323/1‑141 ATTGCTCCGGCATTGATTTGTTCAATGAGTGCAGTTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACT > 2:546847/1‑141 ATTGCTCCGGCATTGATTTGTTCAATGAGTGCAGTTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGATAAAATTGCATTACATGCAGATACT > 2:1065348/1‑141 ATTGCTCCGGCATTGATTTGTTCAATGAGTGCAGATGGAGTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAACTTGATGTTCAAATTGCATTACATGCACATACT > 2:1280881/1‑141 GCATTGATTTGTTCAATGAGTGCAGTTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAA > 2:170692/1‑141 TGGATTAATAGTTCATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGGATTTATGGAAGACACAATGGC < 2:590838/141‑1 TGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCTTTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGGACTTTTGGAAGACACAATGGC < 1:761384/141‑1 TGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGTAGGATTTATGGAAGACACAATGGC < 1:560174/141‑1 TGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGGATTTATGGAAGACACAATGGC < 1:89162/141‑1 TGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGGATTTATGGAAGACACAATGGC > 2:1130240/1‑141 TGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGGATTTATGGAAGACACAATGGC < 1:825896/141‑1 TGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGGATTTATGGAAGACACAATGGC > 2:473133/1‑141 TGGATTAAAAGGACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGGATTTATGGAAGACACAATGGC < 2:953770/141‑1 cTTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGGATTTATGGAAGACACAATGGCTGC > 2:1187777/2‑141 ATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGGATTTATGGAAGACACAATGGCTGC < 2:7240/141‑1 ATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGGATTTATGGAAGACACAATGGCTGC > 2:284036/1‑141 GTATCTGCATGTAATGCAATTTGAACATCAAATTCATCAGCAACATCTAATGCATGACTCAAAGCAGATGGTGTTGCACCCCAGTCTTCATGTACTTTTAATCCAATTGCTCCGGCATTGATTTGTTCAATGAGTGCAGTTGGATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2407093‑2406948‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggattAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGGATTTATGGAAGACACAATGGCTGC > USA300TCH1516_ALE/2406995‑2407132 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |