BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2406948 =	167 (1.380)	8 (0.070)	3/266	9.3	5.0%	coding (613/1716 nt)	ureC	Urease subunit alpha
*	?	USA300TCH1516_ALE	2406995 =	144 (1.250)	8 (0.070)	3/266	9.3	5.0%	coding (660/1716 nt)	ureC	Urease subunit alpha
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 157 total aligned reads displayed.

GTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGGATTTATGGAAGACACAATGGCTGCTGT  >  USA300TCH1516_ALE/2406855‑2407135

gTAACTCCAGGTCCGTGGCCTATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTa                                                                                                                                              >  1:749848/1‑141 (MQ=255)

        aGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGGTTAAAAGTACa                                                                                                                                      >  1:235869/1‑141 (MQ=255)

          gTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATg                                                                                                                                    <  2:305701/141‑1 (MQ=255)

          gTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATg                                                                                                                                    <  1:660290/141‑1 (MQ=255)

            ccACGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTCACAAGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAACTGGATTAAAAGTACATGaa                                                                                                                                  <  2:2135/141‑1 (MQ=255)

             cATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAg                                                                                                                                 <  1:559924/141‑1 (MQ=255)

             cATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAg                                                                                                                                 <  1:279285/141‑1 (MQ=255)

              aTGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGGGACATTGGAGTAAAAGTCCATGAAGa                                                                                                                                >  2:1105687/1‑141 (MQ=255)

              aTGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGa                                                                                                                                >  2:1001897/1‑141 (MQ=255)

              aTGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGa                                                                                                                                >  1:815194/1‑141 (MQ=255)

              aTGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGACGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATCGGATTACAAGTACATGAAGa                                                                                                                                >  2:1131688/1‑141 (MQ=255)

               tGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGAc                                                                                                                               <  2:171487/141‑1 (MQ=255)

                ggCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACt                                                                                                                              <  1:1162564/141‑1 (MQ=255)

                 gCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTg                                                                                                                             <  1:626448/141‑1 (MQ=255)

                  cATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAAATGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTgg                                                                                                                            <  2:996004/141‑1 (MQ=255)

                  cATATTCATAGAATGTGAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTgg                                                                                                                            <  1:470534/141‑1 (MQ=255)

                   atatTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTggg                                                                                                                           >  2:575185/1‑141 (MQ=255)

                    tatTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTgggg                                                                                                                          <  1:1081945/141‑1 (MQ=255)

                        cATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATTCCGGAGCAATTGGATTACAAGTACATGAAGACTGGGGTACa                                                                                                                      >  2:352222/1‑141 (MQ=255)

                        cATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCAGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGAGCa                                                                                                                      >  2:411284/1‑141 (MQ=255)

                        cATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGAAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCa                                                                                                                      >  2:683218/1‑141 (MQ=255)

                                gTTAGACGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATc                                                                                                              <  2:362263/141‑1 (MQ=255)

                                  tAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGAAACACCATATg                                                                                                            >  1:1017177/1‑141 (MQ=255)

                                  tAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGAACAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTg                                                                                                            >  1:116894/1‑141 (MQ=255)

                                      aGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCttt                                                                                                        <  1:701445/141‑1 (MQ=255)

                                      aGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGAAAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCttt                                                                                                        <  1:287614/141‑1 (MQ=255)

                                      aGCTGCCGAAGGTTGACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCttt                                                                                                        <  1:273380/141‑1 (MQ=255)

                                      aGCTGCCGAAGGTGTACCGATTACTGTGGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACCAATCAATGCCGGAGCACTTGGATTAAAAGTACACGAAGACTGGGGTGCAACCCCATCTGCttt                                                                                                        <  2:861233/141‑1 (MQ=255)

                                         tGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGACGACTGGGGTGCAACACCACATGCGTTGAg                                                                                                     >  2:778716/1‑141 (MQ=255)

                                         tGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAg                                                                                                     >  1:1248465/1‑141 (MQ=255)

                                           ccGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCACCACCATCTGCTTTGAgcc                                                                                                   >  2:110087/1‑139 (MQ=255)

                                            cGAAGGTTTACCGATTAATGTCGGTTTTACAGGTACAGGACAACCAACGAATCCAACTACGCGCGGTGAACAAATCGATGCCGTAGCAATGGGATTCAAAGTCCATGAAAACAGGGGTGAGAAACCAGCGGCttgcggtaa                                                                                                  >  2:342828/1‑134 (MQ=255)

                                            cGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCa                                                                                                  <  1:1214199/141‑1 (MQ=255)

                                            cGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCa                                                                                                  <  1:1174709/141‑1 (MQ=255)

                                            cGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCCTTGAGtaa                                                                                                  >  2:1240864/1‑139 (MQ=255)

                                             gAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCCACTGCCCTCATTGAACAAATCAATGCGGGAGCAGTTGAGTTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGTGTGAt                                                                                                 >  1:148763/1‑141 (MQ=255)

                                             gAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAAACTGGGGTGCAACACCATCTGCTTTGAGTCAt                                                                                                 >  1:14691/1‑141 (MQ=255)

                                               aGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCCACACCATCGTCTTTGAGACAtta                                                                                               >  2:863173/1‑139 (MQ=255)

                                                           tAATGTCGGTTTGACAGGTAAAGGACAAGCAACAAATCCAACTGCACACATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGc                                                                                   <  2:204223/141‑1 (MQ=255)

                                                             aTGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCACCTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGAGTAAAAGTACATGAAGACTGTGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCtg                                                                                 <  2:1356212/141‑1 (MQ=255)

                                                             aTGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGAGGTTGCtg                                                                                 >  2:1291490/1‑141 (MQ=255)

                                                              tGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCtga                                                                                <  1:166731/141‑1 (MQ=255)

                                                                  ggTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGaa                                                                            >  1:1338753/1‑141 (MQ=255)

                                                                      ttACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTg                                                                        >  1:809177/1‑141 (MQ=255)

                                                                       tACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAg                                                                                          >  1:735146/1‑122 (MQ=255)

                                                                       tACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAg                                                                                          <  2:735146/122‑1 (MQ=255)

                                                                       tACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGa                                                                       <  1:991488/141‑1 (MQ=255)

                                                                         cAGGTAAAGGACAAGCAACAAATCCAAATATACTCGGTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATg                                                                     >  1:1359238/1‑141 (MQ=255)

                                                                          agctAAAGGAAAAGGAATAAATCCAACCGCACTCCTTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACGGGGGTGCAACACCATCTGCTCTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGt                                                                    <  1:211780/138‑1 (MQ=255)

                                                                          aGGTAAAGGACAAGCAACAAATCCACCTGCACTGATTGAACAAATGAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGt                                                                    <  1:1142379/141‑1 (MQ=255)

                                                                          aGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATCTTGCTGATGAATTTGATGt                                                                    <  1:725460/141‑1 (MQ=255)

                                                                            gTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATTAATTTGATGTTc                                                                  <  1:706423/141‑1 (MQ=255)

                                                                            gTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTc                                                                  <  2:809177/141‑1 (MQ=255)

                                                                            gTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAAAAAAACAAGGCCGGAGCAATTGGATTAAAAGTACATGAAGACCGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTc                                                                  <  1:229204/141‑1 (MQ=255)

                                                                              aaaGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCaa                                                                >  1:7240/1‑141 (MQ=255)

                                                                              aaaGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGAACAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGCTCaa                                                                <  1:933257/141‑1 (MQ=255)

                                                                                aGGACAAGCAACAAATTCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACTATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAAt                                                              <  2:1139236/141‑1 (MQ=255)

                                                                                 ggACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACGCCATCTGCTTTGAGTCATGCATTAGATGTTGTTGATAAATTTGATGTTCAAAtt                                                             >  1:806289/1‑141 (MQ=255)

                                                                                 ggACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAAtt                                                             >  1:94395/1‑141 (MQ=255)

                                                                                  gACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTg                                                            >  1:438603/1‑141 (MQ=255)

                                                                                   aCAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGc                                                           <  2:504403/141‑1 (MQ=255)

                                                                                       gCAACAAATCCAACTGCACTCAATGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTa                                                       >  2:1327783/1‑141 (MQ=255)

                                                                                       gCAACAAATCCAAATGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTAAGTGGAGACTGGGGTGCAACACCATCTGCTTTGCGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTa                                                       >  2:40192/1‑141 (MQ=255)

                                                                                               tCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGa                                               <  2:808321/141‑1 (MQ=255)

                                                                                                ccAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGATCAAATTGCATTACATGCAGAt                                              >  2:340507/1‑141 (MQ=255)

                                                                                                  aaCTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAGAGTACATGAATACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATAc                                            <  2:618655/141‑1 (MQ=255)

                                                                                                  aaCTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATAc                                            <  2:1252514/141‑1 (MQ=255)

                                                                                                    cTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACtt                                          >  1:96328/1‑141 (MQ=255)

                                                                                                     tGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACttt                                         >  1:1124806/1‑141 (MQ=255)

                                                                                                       cACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTaa                                       >  1:882745/1‑141 (MQ=255)

                                                                                                           cATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCGAATTGCATTACATGCAGATACTTTAAATGa                                   >  1:370558/1‑141 (MQ=255)

                                                                                                           cATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGa                                   >  2:1240785/1‑141 (MQ=255)

                                                                                                           cATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGa                                   >  2:689647/1‑141 (MQ=255)

                                                                                                           cATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATATTCAAATTGCATTACATGCCGATACTTTAAAtaa                                   >  1:337024/1‑139 (MQ=255)

                                                                                                              tGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGc                                <  1:449836/141‑1 (MQ=255)

                                                                                                               gAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCa                               <  1:1031897/141‑1 (MQ=255)

                                                                                                                 aCAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAgg                             >  1:199946/1‑141 (MQ=255)

                                                                                                                 aCAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAgg                             >  1:1201869/1‑141 (MQ=255)

                                                                                                                 aCAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAgg                             <  2:958256/141‑1 (MQ=255)

                                                                                                                       cAATGCCGGAGCAATTGGATTAAAAGTACACGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGGATTTAt                       <  1:32019/141‑1 (MQ=255)

                                                                                                                        aaTGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGGATTTATg                      <  1:1065352/141‑1 (MQ=255)

                                                                                                                        aaTGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGGATTTATg                      >  2:503600/1‑141 (MQ=255)

                                                                                                                        aaTGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGGATTTATg                      <  1:1330203/141‑1 (MQ=255)

                                                                                                                          tgtcGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGGATTTATGGa                    <  2:609622/138‑1 (MQ=255)

                                                                                                                          tGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGGATTTATGGa                    <  2:565180/141‑1 (MQ=255)

                                                                                                                          tGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGGATTTATGGa                    <  2:135462/141‑1 (MQ=255)

                                                                                                                           gactgAGCAATTCGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGACGAAGTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGGATTTATGGaa                   <  1:133487/137‑1 (MQ=255)

                                                                                                                           gCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGCTGTTCAAATTGCATTACATGCCGATACTTTAAATGAAGCAGGATTTATGGaa                   >  2:487947/1‑141 (MQ=255)

                                                                                                                           gCCGGAGCAATGGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGGATTTATGGaa                   <  1:618954/141‑1 (MQ=255)

                                                                                                                              ggAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGCATTTATGGAAGaa                >  2:420185/1‑140 (MQ=255)

                                                                                                                                   aaTTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGGATTTATGGAAGACACaag           >  1:402520/1‑140 (MQ=255)

                                                                                                                                      tGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGGATTTATGGAAGACACAATGgc        <  1:89162/141‑1 (MQ=255)

                                                                                                                                      tGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGGATTTATGGAAGACACAATGgc        >  2:473133/1‑141 (MQ=255)

                                                                                                                                      tGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGGATTTATGGAAGACACAATGgc        >  2:1130240/1‑141 (MQ=255)

                                                                                                                                      tGGATTAAAAGGACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGGATTTATGGAAGACACAATGgc        <  2:953770/141‑1 (MQ=255)

                                                                                                                                         cttAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGGATTTATGGAAGACACAATGgctgc     >  2:1187777/2‑141 (MQ=255)

                                                                                                                                         aTTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGGATTTATGGAAGACACAATGgctgc     <  2:7240/141‑1 (MQ=255)

                                                                                                                                         aTTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGGATTTATGGAAGACACAATGgctgc     >  2:284036/1‑141 (MQ=255)

                                                                                                                                            aaaaGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGGATTTATGGAAGACACAAAGGCGGCGGt  >  2:1183162/1‑141 (MQ=255)

                                                                                                                                            aaaaGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGAGGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGGATTTATGGAAGACACAATGGCTGCTGt  >  2:617770/1‑141 (MQ=255)

GTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCAGATACTTTAAATGAAGCAGGATTTATGGAAGACACAATGGCTGCTGT  >  USA300TCH1516_ALE/2406855‑2407135

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.