| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2406948 = | 167 (1.380) | 8 (0.070) | 3/266 | 9.3 | 5.0% | coding (613/1716 nt) | ureC | Urease subunit alpha |
| ? | USA300TCH1516_ALE | 2406995 = | 144 (1.250) | coding (660/1716 nt) | ureC | Urease subunit alpha | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 168 total aligned reads displayed.
ATATTGGTGGTGGTACTGGTGCTTCAGAAGGTTCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCA > USA300TCH1516_ALE/2406808‑2407088 | atatTGGTGGTGGTACTGGTGCTTCAGAAGGTTCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGcaacaa > 1:958256/1‑141 (MQ=255) tatTGGTGGTGGTACTGGTGCTTCAGAAGGTTCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTGAAGGACAAGCAACaaa > 1:1267022/1‑141 (MQ=255) tatTGGTGGTGGTACTGGTGCTTCAGAAGGTTCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACaaa < 2:1340722/141‑1 (MQ=255) tatTGGTGGTGGTACTGGTGCTTCAGAAGGTTCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACaaa < 2:739659/141‑1 (MQ=255) tatTGGTGGTGGTACTGGTGCTTCAGAAGGTTCTAAAGCAACAACTGTAACCCCAGGTCCATGGACTACTCACAGGATGTTAGATGTGGCGGAATGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACaaa < 1:1001082/141‑1 (MQ=255) tatTGGGGGTGGTACTGGTGCTTCAGAAGGTTCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACaaa < 1:1126624/141‑1 (MQ=255) gcgtgaCTGGTGCTTCAGAAGGTTCTAAAGCAACAACTGTAAATCCAGGGCCATTGCATGTTCAGAGGATGTTAGAAGCTGCCGAAGGTTTACCGATTAACGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTg < 2:416165/136‑1 (MQ=255) ggtACTGGTGCTTCAGAAGGTTCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGCCAAGCAACAAATCCAACTGCa < 2:974348/141‑1 (MQ=255) ggtACTGGTGCTTCAGAAGGTTCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCa < 2:1064383/141‑1 (MQ=255) ggtACTGGTGCTTCAGAAGGTTCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCa < 1:1174455/141‑1 (MQ=255) ggtACTGGTGCTTCAGAAGGTTCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCa < 1:1324427/141‑1 (MQ=255) ggtACTGGTGCTTCAGAAGGTTCCAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCa < 1:9413/141‑1 (MQ=255) gtACTGGTGCTTCAGAAGGTTCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCAc > 2:1219626/1‑141 (MQ=255) gtACTGGTGCTTCAGAAGGTTCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCAGAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCAc > 2:32019/1‑141 (MQ=255) aCTGGTGCTTCAGAAGGTTCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGCTTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTc > 1:890532/1‑141 (MQ=255) aCTGGTGCTTCAGAAGGTTCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAAGGTCGGTTTTACAGGTAACGGACAAGCAACAAATCCAACTGCAcac > 1:123271/1‑139 (MQ=255) cTGGTGCTTCAGAAGGTTCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCa > 1:1369655/1‑141 (MQ=255) gTGCTTCAGAAGGTTCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTg > 1:846358/1‑141 (MQ=255) gTGCTTCAGAAGGTTCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTg > 2:1330203/1‑141 (MQ=255) gTGCTTCAGAAGGTTCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTg < 1:410750/141‑1 (MQ=255) cctCAGAAGGGTGCAAAGTAACAACTACCACTCCACGTCCATGGCATATTCATAGAATGTTAGAAGGCGCCGAAGGTTTACCGATTAATGTAGGTTTTACAGGGAAAGGACAAGCAACAAATCCAACTGCACTCATCGAAc < 2:678420/139‑1 (MQ=255) aaGGTTCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCa > 2:449836/1‑141 (MQ=255) aGGTTCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAACTCCAACTGCACTCATTGACCATATCaa > 2:37080/1‑141 (MQ=255) aGGTTCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCAATGAGTGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCaa > 1:996576/1‑141 (MQ=255) ggTTCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACaaataaat > 2:515654/1‑141 (MQ=255) ggTTCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAAt < 1:693194/141‑1 (MQ=255) tCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGCAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGGACTCATTGAACAAATCAATGcc > 2:1249510/1‑141 (MQ=255) tCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATCCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGcc > 2:1029834/1‑141 (MQ=255) tAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGGTTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCgg > 1:325020/1‑141 (MQ=255) aaaGCAACAACTGTAACTCCATTACCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGa > 2:1327289/1‑141 (MQ=255) aGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACACGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGc < 2:727140/141‑1 (MQ=255) aGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCCACTGCACTCATTGAACAAATCAATGCCGGAGc < 1:713116/141‑1 (MQ=255) aGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGc < 1:333461/141‑1 (MQ=255) aGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGc < 1:484704/141‑1 (MQ=255) caacaaCTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCaa > 2:689879/1‑141 (MQ=255) caacaaCTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCaa > 2:402452/1‑141 (MQ=255) aacaacTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACCGGTGAATTATAATCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAAt > 2:618954/1‑141 (MQ=255) aacaacTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAAt > 2:239632/1‑141 (MQ=255) aacaacTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACCAATTGAACAAATCAATGCCGGAGCAAt > 2:133487/1‑141 (MQ=255) acaacTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGAGATGTAACAAATCAACCTGAACTCATTGAACAAATCAATGCCGGAGCAAtt > 1:989953/1‑141 (MQ=255) acaacTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGGGCAAtt > 1:805836/1‑141 (MQ=255) acaacTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAAtt < 1:349899/141‑1 (MQ=255) acaacTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAAtt > 1:609622/1‑141 (MQ=255) acaacTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAAtt > 1:565180/1‑141 (MQ=255) acaacTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAAtt > 1:135462/1‑141 (MQ=255) acaacTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAAtt > 1:117864/1‑141 (MQ=255) acaacTGTAACTCCAGGTCCATGGCATATTCATAGAATGTGAGAAGCTGCCGAAGGTTTACCGCTTAATGTCGGTTTTACAGGTAAAGGCCAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAAtt < 1:502417/141‑1 (MQ=255) aaaacTGTAACTCCAGGTCAATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAAtt < 1:669755/139‑1 (MQ=255) cTGTAACTCCGGGTCCAGGGGTTATGCATAGAGTGTTGGAAGCCGCCGAGGGTTTACCGATTAATGTCGGTTTTAGTGGGAAAGGAAAAGCAACAAATCGACTGGAACTCATTGAACAAATCAAGGCCGGAGCAATTGGAt < 2:9678/141‑1 (MQ=255) gTAACTCCAGGTCCGTGGCCTATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTa > 1:749848/1‑141 (MQ=255) aGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGGTTAAAAGTACa > 1:235869/1‑141 (MQ=255) gTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATg < 1:660290/141‑1 (MQ=255) atCCACGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATg < 2:1371894/140‑1 (MQ=255) ccATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGaa < 2:1135766/141‑1 (MQ=255) cATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAg < 1:279285/141‑1 (MQ=255) cATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAg < 1:1108989/141‑1 (MQ=255) cATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAg > 1:808321/1‑141 (MQ=255) aTGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGGGACATTGGAGTAAAAGTCCATGAAGa > 2:1105687/1‑141 (MQ=255) aTGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGACGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATCGGATTACAAGTACATGAAGa > 2:1131688/1‑141 (MQ=255) ggCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACt < 1:1162564/141‑1 (MQ=255) ggCATATTCATAGAATCTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACt < 2:344429/141‑1 (MQ=255) gCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTg < 1:626448/141‑1 (MQ=255) cATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGAGTAAAACTACATGAAGACTgg > 1:16307/1‑141 (MQ=255) cATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAAATGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTgg < 2:996004/141‑1 (MQ=255) cATATTCATAGAATGTGAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTgg < 1:470534/141‑1 (MQ=255) atatTCATAGAATGTTAGAAGCTGCCGGAGGATGACCGATGAATGTCGGTTTTACAGGGAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATAGGATTCAAAGTACCTAAAGACTggg > 2:1146981/1‑141 (MQ=255) atatTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTggg > 2:575185/1‑141 (MQ=255) tatTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTgggg < 1:433084/141‑1 (MQ=255) tatTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTgggg < 1:1081945/141‑1 (MQ=255) cATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATTCCGGAGCAATTGGATTACAAGTACATGAAGACTGGGGTACa > 2:352222/1‑141 (MQ=255) tAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGAAACACCATATg > 1:1017177/1‑141 (MQ=255) aGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGAAAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCttt < 1:287614/141‑1 (MQ=255) aGCTGCCGAAGGTGTACCGATTACTGTGGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACCAATCAATGCCGGAGCACTTGGATTAAAAGTACACGAAGACTGGGGTGCAACCCCATCTGCttt < 2:861233/141‑1 (MQ=255) tGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGACGACTGGGGTGCAACACCACATGCGTTGAg > 2:778716/1‑141 (MQ=255) ccGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCACCACCATCTGCTTTGAgcc > 2:110087/1‑139 (MQ=255) cGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCa < 1:1174709/141‑1 (MQ=255) cGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCa < 1:1214199/141‑1 (MQ=255) cGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCCTTGAGtaa > 2:1240864/1‑139 (MQ=255) gAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAAACTGGGGTGCAACACCATCTGCTTTGAGTCAt > 1:14691/1‑141 (MQ=255) tACCGATTAATGTCGGTTTTACAGGTAAAGGCACAGCAACAAATCCAACTGTACTCATACAACAAAGCAAGGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAg > 2:287461/1‑141 (MQ=255) aCCGATTAATGTCGCTTTTACAGGTAAAGGACAAGCAACAAATCCACCCGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATTCATTAGa < 2:1313019/141‑1 (MQ=255) tAATGTCGGTTTGACAGGTAAAGGACAAGCAACAAATCCAACTGCACACATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGc < 2:204223/141‑1 (MQ=255) agttatgTTTGACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTCGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCtg < 2:1110827/135‑1 (MQ=255) aTGTCGGTTTTACATGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGCGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCtg < 1:979643/141‑1 (MQ=255) tGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCtga < 1:166731/141‑1 (MQ=255) ttACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTg > 1:809177/1‑141 (MQ=255) tACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAg > 1:735146/1‑122 (MQ=255) cAGGTAAAGTACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACAGGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATg < 1:229237/141‑1 (MQ=255) cAGGTAAAGGACAAGCAACAAATCCAAATATACTCGGTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATg > 1:1359238/1‑141 (MQ=255) agctAAAGGAAAAGGAATAAATCCAACCGCACTCCTTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACGGGGGTGCAACACCATCTGCTCTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGt < 1:211780/138‑1 (MQ=255) aGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGt < 1:402452/141‑1 (MQ=255) aGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATCTTGCTGATGAATTTGATGt < 1:725460/141‑1 (MQ=255) gTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATTAATTTGATGTTc < 1:706423/141‑1 (MQ=255) gTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTc < 2:809177/141‑1 (MQ=255) aaaGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCaa > 2:498050/1‑141 (MQ=255) aaaGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGAACAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGCTCaa < 1:933257/141‑1 (MQ=255) aGGACAAGCAACAAATCCAACTGCACTCATGGAACAAATCAATGCCGGAGTAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAAt < 2:933441/141‑1 (MQ=255) aaGCAACAACTCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCAt > 2:1036158/1‑141 (MQ=255) gCAACAAATCCAAATGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTAAGTGGAGACTGGGGTGCAACACCATCTGCTTTGCGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTa > 2:40192/1‑141 (MQ=255) aaTCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCa < 1:1331074/141‑1 (MQ=255) | ATATTGGTGGTGGTACTGGTGCTTCAGAAGGTTCTAAAGCAACAACTGTAACTCCAGGTCCATGGCATATTCATAGAATGTTAGAAGCTGCCGAAGGTTTACCGATTAATGTCGGTTTTACAGGTAAAGGACAAGCAACAAATCCAACTGCACTCATTGAACAAATCAATGCCGGAGCAATTGGATTAAAAGTACATGAAGACTGGGGTGCAACACCATCTGCTTTGAGTCATGCATTAGATGTTGCTGATGAATTTGATGTTCAAATTGCATTACATGCA > USA300TCH1516_ALE/2406808‑2407088 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |