| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2618806 | 162 (1.340) | 4 (0.040) | 3/264 | 9.2 | 2.5% | coding (291/1638 nt) | pgcA | Phosphoglucomutase |
| ? | USA300TCH1516_ALE | = 2618808 | 153 (1.340) | coding (293/1638 nt) | pgcA | Phosphoglucomutase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGTGAAGGTCGACTTAATAAGTTTACTATTGAAAAATTGGCATTAGGTTTAGCGCGTTATTTAAATGCCCAAACAAACAGTCCAACAATAGTCATTCATTATGATATTAGACATCTTTCAACTGAATTCGCCCAAATAATTGCTAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2618660‑2618806‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgctaatACATTAGCAATTATTTGGGCGAATTCAGTTGAAAGATGTCTAATATCATAATGAATGACTATTGTTGGACTGTTTGTTTGGGCATTTAAATAACGCGCTAAACCTAATGCCAATTTTTCAATAGTAAACTTATTAAGTC < USA300TCH1516_ALE/2618808‑2618670 GGTGAAGGTCGACTTAATAAGTTTACTATTGAAAAATTGGCATTAGGTTTAGCGCGTTATTTAAATGCCCAAACAAACAGTCCAACAATAGTCATTCATTATGATATTAGACAGCTTTCAACTGAATTCGCCCAAATAATT > 1:329192/1‑141 GTGAAGGTCGACTTAATAAGTTTACTATTGAATAATTGGCATTAGGTTTAGCGCGTTATTTAAATGCCCAAACAAACAGTCCAACAATAGTCATTCATTATGATATTAGACATCTTTCATCTGAATTCGCCCAAATCATTG < 2:269330/141‑1 GTGAAGGTCGACTTAATAAGTTTACTATTGAAAAATTGTCATTAGGTTTAGCGCGTTATTTAAATGCCCAAACAAACATTCCAACAATAGTCATTCATTATGATATTAGACATCTTTCAACTGAATTCGCCCAAATAATTG < 1:486516/141‑1 GTGAAGGTCGACTTAATAAGTTTACTATTGAAAAATTGGCATTAGGTTTAGCGCGTTATTTAAATGCCCAAACAAACAGTCCAACAATAGTCATTCATTATGATATTAGGCATCTTTCAACTGAATTCGCCCAAATAATTG > 1:504870/1‑141 GTGAAGGTCGACTTAATAAGTTTACTATTGAAAAATTGGCATTAGGTTTAGCGCGTTATTTAAATGCCCAAACAAACAGTCCAACAATAGTCATTCATTATGATATTAGACATCTTTCAACTGAATTCGCCCAAATAATTG < 2:781545/141‑1 GTGAAGGTCGACTTAATAAGTTTACTATTGAAAAATTGGCATTACGTTTAGCGCGTTATTTACATGCCCAAACAAACAGTCCAACAATAGGCATTCACTATGATATTAGACATCTTTCAACTGAATTCGCCCAAATAATTt > 2:119677/1‑140 GTGAAGGTCGACTTAATAAGTTTACTAGTGAAAAATTGGCATTAGGTTTAGCGCGTTATTTAAATGCCCAAACAAACAGTCCAACAATAGTCATTCATTATGATATGAGACATCTTTCAACTGAATTCGCCCAAATAATTG < 1:803990/141‑1 TGAAGGTCGACTTAATAAGTTTACTATTGAAAAATTGGCATTAGGTTTAGCGCGTTATTTAAATGCCCAAACAAACAGCCCAACAATAGTCATTCATTATGATATTAGACATCTTTCAACTGAATTCGCCCAAATAATTGC < 1:1214873/141‑1 AAGGTCGACTTAATAAGTTTACTATTGAAAAATTGGCATTAGGTTTAGCGCGTTATTTAAATGCCCAAACAAACAGTCCAACAATAGTCATTCATTATGATATTAGACATCTTTCAACTGAATTCGCCCAAATAATTGCTA < 1:354622/141‑1 TCGACTTAATAAGTTTACTATTGAAAAATTGGCATTAGGTTTAGCGCGTTATTTAAATGCCCAAACAAACAGTCCAACAATAGTCATTCATTATGATATTAGACATCTTTCAACTGAATTCGCCCAAATAATTGCTAAcgt < 1:151701/141‑4 AAAAATTGGCATTAGGTTTATCGCGTTATTTAAATGCCCAAACAAACAGTTCACGAAGGGTCATTCATTATGATATTAGGCATCTTTCAACTGAATTCGCCCAAATAATTGCTAATACATTAGCAATTATTTGGGCGAATT < 1:38531/141‑1 AAAAATTGGCATTAGGTTTAGCGCGTTATTTAAATGCCCAAACAAACAGTCCAACAATAGTCATTCATTATGATATTAGACATCTTTCAACTGAATTCGCCCAAATAATTGCTAATACATTAGCAATTATTTGGGCGAATT < 2:1196758/141‑1 CGCGTTATTTAAATGCCCAAACAAACAGGCCAACAATAGTCATTCATTATGATATTAGACATCTTTCAACTGAATTCGCCCAAATAATTGCTAATACATTAGCAATTATTTGGGCGAATTCAGTTGAAAGATGTCTAATAT < 1:534644/141‑1 CAGTCCAACAATAGTCATTCATTATGATATTAGACATCTTTCAACTGAATTCCCCCAAATAATTGCTAATACATTAGCAATTATTTGGGCGAATTCAGTTGAAAGATGTCTAATATCATAATGAATGACTATTGTTGGACT < 1:350874/141‑1 ggtcTGCTAATACATTAGCAATTATTTGGGCGAATTCAGTTGAAAGATGTCTAATATCATAATGAATGACTATTGTTGGACTGTTTGTTTGGGCATTTAAATAACGCGCTAAACCTAATGCCAATTTTTCAATAGTAAACT < 1:355648/137‑1 TTGCTAATACATTAGCAATTATTTGGGCGAATTCAGTTGAAAGATGTCTAATATCATAATGAATGACTATTGTTGGACTGTTTGTTTGGGCATTTAAATAACGCGCTAAACCTAATGCCAATTTTTCAATAGTAAACTTAT < 2:1302477/141‑1 GCTAATACATTAGCAATTATTTGGGCGAATTCAGTTGAAAGATGTCTAATATCATAATGAATGACTATTGTTGGACTGTTTGTTTGGGCATTTAAATAACGCGCTAAACCTAATGCCAATTTTTCAATAGTAAACTTATTA > 1:122818/1‑141 GCTAATACATTAGCAATTATTTGGGCGAATTCAGTTGAAAGATGTCTAATATCATAATGAATGACTATTGTTGGACTGTTTGTTTGGGCATTTAAATAACGCGCTAAACCTAATGCCAATTTTTCAATAGTAAACTTATTA > 2:369484/1‑141 CTAATACATTAGCAATTATTTGGGCGAATTCAGTTGAAAGATGTCTAATATCATAATGAATGACTATTGTTGGACTGTTTGTTTGGGCATTTAAATAACGCGCTAAACCTAATGCCAATTTTTCAATAGTAAACTTATTAA > 1:717305/1‑141 CTAATACATTAGCAATTATTTGGGCGAATTCAGTTGAAAGATGTCTAATATCATAATGAATGACTATTGTTGGACTGTTTGTTTGGGCATTTAAATAACGCGCTAAACCTAATGCCAATTTTTCAATAGTAAACTTATTAA > 1:1040777/1‑141 CTAATACATTAGCAATTATTTGGGCGAATTCAGTTGAAAGATGTCTAATATCATAATGAATGACTATTGTTGGACTGTTTGTTTGGGCATTTAAATAACGCGCTAAACCTAATGCCAATTTTTCAATAGTAAACTTATTAA > 2:1022139/1‑141 ATACATTAGCAATTATTTGGGCGAATTCAGTTGAAAGATGTCTAATATCATAATGAATGACTATTGTTGGACTGTTTGTTTGGGCATTTAAATAACGCGCTAAACCTAATGCCAATTTTTCAATAGTAAACTTATTAAGTC > 1:12057/1‑141 ATACATTAGCAATTATTTGGGCGAATTCAGTTGAAAGATGTCTAATATCATAATGAATGACTATTGTTGGACTGTTTGTTTGGGCATTTAAATAACGCGCTAAACCTAATGCCAATTTTTCAATAGTAAACTTATTAAGTC > 1:838105/1‑141 ATACATTAGCAATTATTTGGGCGAATTCAGTTGAAAGATGTCTAATATCATAATGAATGACTATTGTTGGACTGTTTGTTTGGGCATTTAAATAACGCGCTAAACCTAATGCCAATTTTTCAATAGTAAACTTATTAAGTC > 1:1319838/1‑141 GGTGAAGGTCGACTTAATAAGTTTACTATTGAAAAATTGGCATTAGGTTTAGCGCGTTATTTAAATGCCCAAACAAACAGTCCAACAATAGTCATTCATTATGATATTAGACATCTTTCAACTGAATTCGCCCAAATAATTGCTAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2618660‑2618806‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgctaatACATTAGCAATTATTTGGGCGAATTCAGTTGAAAGATGTCTAATATCATAATGAATGACTATTGTTGGACTGTTTGTTTGGGCATTTAAATAACGCGCTAAACCTAATGCCAATTTTTCAATAGTAAACTTATTAAGTC < USA300TCH1516_ALE/2618808‑2618670 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |