BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	72990 =	134 (1.110)	7 (0.060)	3/254	9.0	5.6%	intergenic (‑17/+69)	arcD_1/arcA_1	Arginine/ornithine antiporter/Arginine deiminase
*	?	USA300TCH1516_ALE	73054 =	115 (1.050)	7 (0.060)	3/254	9.0	5.6%	intergenic (‑81/+5)	arcD_1/arcA_1	Arginine/ornithine antiporter/Arginine deiminase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 138 total aligned reads displayed.

TATCATAGAGCCTATGACTAAACCAATTAAGGAAGTTTTACCTAATTTATTTTCATCCATATTAATCTCCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACTACCAGTAATTTCAATCACTTTAATTCCTTTGTCGCGTAAAAGTTGGTTTGATACATAGTTGCGATC  >  USA300TCH1516_ALE/72914‑73193

tATCATAGAGCCTATGACTAAACCAATTAAGGAAGTTTTACCTAATTTATTTTCATCCATATTAATCTCCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTc                                                                                                                                             <  1:1137331/141‑1 (MQ=255)

tATCATAGAGCCTATGACTAAACCAATTAAGGAAGTTTTACCTAATTTATTTTCATCCATATTAATCTCCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTc                                                                                                                                             <  2:165899/141‑1 (MQ=255)

    aTAGAGCCTATGACTAAACCAATTAAGGAAGTTTTACCTAATTTATTTTCATCCATATTATTCTTCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAAt                                                                                                                                         <  1:1350191/141‑1 (MQ=255)

         gCCTATGACTAAACCAATTAAGGAAGTTTTACCTAATTTATTTTCATCCATATTAATCTCCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTTACTTTTACCACCTTTCACATTTaaa                                                                                                                                    >  2:703174/1‑141 (MQ=255)

         gCCTATGACTAAACCAATTAAGGAAGTTTTACCTAATTTATTTTCATCCATATTAATCTCCCCTAATAAAGATGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACATGGGACTTTTACCACCTATCAAAATTaaa                                                                                                                                    >  2:1236877/1‑141 (MQ=255)

             ttGACTAAACCAATTAAGGAAGTTTTACCTAATTTATTTTCATCCATATTAATCTCCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATAtc                                                                                                                                <  2:680484/140‑1 (MQ=255)

             aTGACTAAACCATTTATGGAAGTTTTACCTAACTTATTTTCAGCCATATGAATCTCCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTATTTGTGACTTTTACCACCTTTCAAATTTAAATAtc                                                                                                                                <  1:125835/141‑1 (MQ=255)

             aTGACCAAACCAATTAAGGAAGTTTTACCTAATTTATTTTCATCCATATTAATCTCCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATAtc                                                                                                                                <  1:239354/141‑1 (MQ=255)

              tGACTAAACCAATTAAGGAAGTTTTACCTAATTTATTTTCATCCATATTAATCTCCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTAAAATTTAGATAtct                                                                                                                               >  1:1365/1‑141 (MQ=255)

                  tAAACCAATTAAGGAAGTTTTACCTAATTTATTTTCATCCATATTAATCTCCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTtctc                                                                                                                           >  1:330263/1‑141 (MQ=255)

                   aaaCCAATTAAGGAAGTTTTACCTAATTTATTTTCATCCATATTAATCTCCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTctct                                                                                                                          >  1:494470/1‑141 (MQ=255)

                   aaaCCAATTAAGGAAGTTTTACCTAATTTATTTTCATCCATATTAATCTCCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTctct                                                                                                                          <  2:208838/141‑1 (MQ=255)

                         aTTAAGGAAGTTTTACCTAATTTATTTTCATCCATATTAATCTCCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATaa                                                                                                                    <  1:726192/141‑1 (MQ=255)

                         aTTAAGGAAGTTTTACCTAATTTATTTTCATCCATATTAATCTCCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATaa                                                                                                                    <  2:1117182/141‑1 (MQ=255)

                          ttAAGGAAGTTTTACCTAATTTATTTTCATCCATATTAATCTCCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTCCTTGAGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAAc                                                                                                                   <  2:898690/141‑1 (MQ=255)

                          ttAAGGAAGTTTTACCTAATTTATTTTCATCCATATTAATCTCCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTTACTTTTACCACCGTTCATCGTTAAACATCTTCTCTAAATAAc                                                                                                                   >  2:216623/1‑141 (MQ=255)

                          ttAAGGAAGTTTTACCTAATTTATTTTCATCCATATTAATCTCCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCCTCTCTAAATAAc                                                                                                                   >  1:531529/1‑141 (MQ=255)

                          ttAAGGAAGTTTTACCTAATTTATTTTCATCCATATTAATCTCCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTACAATTTAAATATCTTCTCTAATTAAc                                                                                                                   >  2:887221/1‑141 (MQ=255)

                            aaGGAAGTTTTACCTAATTTATTTTCATCCATATTAATCTCCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACgg                                                                                                                 <  2:330263/141‑1 (MQ=255)

                              ggAAGTTTTACCTAATTTATTTTCATCCATATTAATCTCCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCt                                                                                                               <  2:986855/141‑1 (MQ=255)

                                aaGTTTTACCTAATTTATTTACATCCATATTAATCTCCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCCCTAAATAACGGCTGa                                                                                                             >  1:829824/1‑141 (MQ=255)

                                  tttttACCTAATTTATTTTCATCCATATTAATCTCCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACt                                                                                                           <  2:1370555/140‑1 (MQ=255)

                                  gTTTTACCTAATTTATTTTCATCCATATTAATCTCCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACt                                                                                                           <  2:1044861/141‑1 (MQ=255)

                                    tttACCTAATTTATTTTCATCCATATTAATCTCCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCa                                                                                                         <  2:82254/141‑1 (MQ=255)

                                    tttACCTAATTTATTTTCATCCATATTAATCTCCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCa                                                                                                         <  1:234277/141‑1 (MQ=255)

                                     ttACCTAATTTATTTTCATCCATATTAATCTCCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGCATGACTcct                                                                                                        >  2:576990/1‑139 (MQ=255)

                                       aCCTAATTTATTTTCATCCATATTAATCTCCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATAc                                                                                                      >  2:119230/1‑141 (MQ=255)

                                       aCCTAATTTACTTTCATCCATATTAATCTCCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATAc                                                                                                      >  2:630819/1‑141 (MQ=255)

                                           aaTTTATTTTCATCCATATTAATCTCCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAAGAACGGCTGACTCTTACATCt                                                                                                  <  1:857460/141‑1 (MQ=255)

                                                   ttCATCCATATTAATCTCCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTc                                                                                          >  2:1044232/1‑141 (MQ=255)

                                                     cATCCATATTAATCTCCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTccc                                                                                        >  1:486100/1‑140 (MQ=255)

                                                       tCCATATTAATCTCCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCcgcc                                                                                      >  1:1193852/1‑140 (MQ=255)

                                                               aaTCTCCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTa                                                                              >  1:526493/1‑141 (MQ=255)

                                                               aaTCTCCCCTAATAAAGGTGGTAAAAATCTTGCTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTa                                                                              <  1:703634/141‑1 (MQ=255)

                                                                agctcCCCTAAGAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTAc                                                                             <  2:1288022/139‑1 (MQ=255)

                                                                aTCTCCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTGTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTAc                                                                             <  2:992959/141‑1 (MQ=255)

                                                                 tctcCCCTTATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACa                                                                            <  2:305152/141‑1 (MQ=255)

                                                                 tctcCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACa                                                                            <  1:942187/141‑1 (MQ=255)

                                                                  ctcCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGCCTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTTGGCCTCCGCGTCCACGTCCaa                                                                           >  2:825863/1‑141 (MQ=255)

                                                                  ctcCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTCCCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACaa                                                                           >  1:102559/1‑141 (MQ=255)

                                                                  ctcCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGCCTCATACATCTTGGGCCTCCGCGTCCACGTACaa                                                                           >  2:273700/1‑141 (MQ=255)

                                                                  ctcCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTCACTCATACATCTTGGGCCTCTGCGTCCACGTACaa                                                                           >  1:515605/1‑141 (MQ=255)

                                                                   tcCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAg                                                                          >  1:802772/1‑141 (MQ=255)

                                                                   cccccTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAg                                                                          <  2:105647/140‑1 (MQ=255)

                                                                    ccccTTATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGt                                                                         <  1:152996/141‑1 (MQ=255)

                                                                    ccccTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGt                                                                         <  1:330522/141‑1 (MQ=255)

                                                                    ccccTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGt                                                                         <  1:1104654/141‑1 (MQ=255)

                                                                      ccTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTc                                                                       <  1:642024/141‑1 (MQ=255)

                                                                       gtaataaAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCCTCTCTAAATAACGGCTAACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCa                                                                      <  2:832703/140‑1 (MQ=255)

                                                                       cTAATAAAGGTGGTAAAAATCTTGTTATGTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAAAATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTcc                                                                      >  1:883225/1‑140 (MQ=255)

                                                                        taataaAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCAc                                                                     >  1:1376310/1‑141 (MQ=255)

                                                                         aataaAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTCCAAGTCCACt                                                                    >  1:625319/1‑141 (MQ=255)

                                                                         aataaAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACt                                                                    <  1:535996/141‑1 (MQ=255)

                                                                         aataaAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACt                                                                    <  2:655301/141‑1 (MQ=255)

                                                                         aataaAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACt                                                                    >  1:777308/1‑141 (MQ=255)

                                                                         aataaAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACACCTTGGGCCTCCGCGTCCACGTACAGGTTCCCt                                                                    >  1:476020/1‑141 (MQ=255)

                                                                            aaaGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACATTTAAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACTAcc                                                                 >  2:346192/1‑141 (MQ=255)

                                                                               ggtggtAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACTACCAGt                                                              <  1:962899/141‑1 (MQ=255)

                                                                                  ggtAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACTACCAGTAAt                                                           >  2:1021358/1‑141 (MQ=255)

                                                                                  ggtAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACTACCAGTAAt                                                           >  1:47355/1‑141 (MQ=255)

                                                                                  ggtAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCAACGTACAAGTCCACTACCAGTAAt                                                           >  1:123824/1‑141 (MQ=255)

                                                                                    tAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACTACCAGTAAttt                                                         <  2:1242058/141‑1 (MQ=255)

                                                                                    tAAAAATCTTGTTATTTGATTTAATCACTGAATTCATATTGACTTTTACCACCTTTCAAATGTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGTCCTCCGCGTCCACGTACAAGTTCACTACCAGTAAttt                                                         <  2:1142005/141‑1 (MQ=255)

                                                                                     aaaaaTCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACTACCAGTAATTTc                                                        <  2:494470/141‑1 (MQ=255)

                                                                                     aaaaaTCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACTACCAGTAATTTc                                                        <  2:1193194/141‑1 (MQ=255)

                                                                                      aaaaTCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACTACCAGTAATTTCa                                                       >  2:1086028/1‑141 (MQ=255)

                                                                                          tCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACTACCAGTAATTTCAATCa                                                   <  1:399005/141‑1 (MQ=255)

                                                                                           cTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCTCCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACTACCAGTAATTTCAATCAc                                                  <  1:1056476/141‑1 (MQ=255)

                                                                                                           atgaatgaATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACTACCAGTAATTTCAATCACTTTAATTCCTTTGTcg                                  >  1:616415/1‑141 (MQ=255)

                                                                                                            tgaatgaaTTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACTACCAGTAATTTCAATCACTTTAATTCCTTTGTcgc                                 >  2:1125366/1‑141 (MQ=255)

                                                                                                               atgaatTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCGCTAAATAACGGCTGACTCATACATCTTGGGCATCCGCGTCCACGTACAATTTAACTACCAGTAATTTCAATCACTTTAATTCCTTTGTCTCGTa                              >  2:873784/1‑141 (MQ=255)

                                                                                                                  aatTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCAACGTACAAGTTCACTACCAGTAATTTCAATCACTTTAATTCCTTTGTCGCGTaaag                           >  2:344932/1‑140 (MQ=255)

                                                                                                                   atTACTTGTGACTTTTACCACCTTTCAAATTTAACTATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACTACCAGTAATTTCAATCACTTTAATTCCTTTGTCGCGTAAAAg                          >  1:456133/1‑141 (MQ=255)

                                                                                                                   atTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTTACTACCAGTAATTCAAATCCCTTTAATTCCTTTGTCGCCTAACAg                          >  2:550887/1‑141 (MQ=255)

                                                                                                                   atTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACTACCAGTAATTTCAATCACTTTAATTCCTTTGTCGCGTAAAAg                          <  1:119230/141‑1 (MQ=255)

                                                                                                                   atTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACTACCAGTAATTTCAATCACTTTAATTCCTTTGTCGCGTAAAAg                          <  1:630819/141‑1 (MQ=255)

                                                                                                                    ttACTTGTGACTTTTACCCCCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACTACCAGTAATTTCAATCACTTTAATTCCTTTGTCGCGTAAAAGt                         <  1:1371065/141‑1 (MQ=255)

                                                                                                                    ttACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACTACCAGTAATTTCAATCACTTTAATTCCTTTGTCGCGTAAAAGt                         <  1:1306293/141‑1 (MQ=255)

                                                                                                                        ttGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACTACCAGTAATTTCAATCACTTTAATTCCTTTGTCGCGTAAAAGTTGGt                     >  1:153617/1‑141 (MQ=255)

                                                                                                                          gtgACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCGTACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACTACCAGTAATTTCAATCGCTTTAATTCCTTTGTCGCGTAAAAGTTGGttt                   >  1:912839/1‑141 (MQ=255)

                                                                                                                          gtgACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACTACCAGTAATTTCAATCACTTTAATTCCTTTGTCGCGTCAAAGTTGGttt                   >  1:362174/1‑141 (MQ=255)

                                                                                                                          gtgACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACTACCAGTAATTTCAATCACTTTAATTCCTTTGTCGCGTAAAAGTTGGttt                   >  1:1333011/1‑141 (MQ=255)

                                                                                                                          gtgACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACTACCAGTAATTTCAATCACTTTAATTCCTTTGTCGCGTAAAAGTTGGttt                   >  1:734516/1‑141 (MQ=255)

                                                                                                                             aCTTTTACCCCCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACTACCAGTAATTTCAATCACTTTAATTCCTTTGTCGCGTAAAAGTTGGTTTGAt                <  2:700389/141‑1 (MQ=255)

                                                                                                                             aCTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAGCGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACTACCAGTAATTTCAATCACTTTAATTCCTTTGTCGCGTAAAAGTTGGTTTGAt                <  2:695841/141‑1 (MQ=255)

                                                                                                                                  tACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACTACCAGTAATTTCAATCACTTTAATTCCTTTGTCGCGTAAAAGTTGGTTTGATACATa           >  2:908738/1‑141 (MQ=255)

                                                                                                                                  tACCACCTTCCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACTACCAGTAATTTCAATCACTTTAATTCCTTTGTCGCGTAAAAGTTGGTTTGATACATa           >  1:1004717/1‑141 (MQ=255)

                                                                                                                                   ttcaccTTTCAAATTTAAATGTCTTCTCTAATTTACGGCTGACTTATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACTACCAGTAATTTCAATCACTTTAATTCCTTTGTCGCGTAAAAGTTGGTTTGATACATAg          <  1:25738/139‑1 (MQ=255)

                                                                                                                                   accaccTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACTACCAGTAATTTCAATCACTTTAATTCCTTTGTCGCGTAAAAGTTGGTTTGATACATAg          <  2:594771/141‑1 (MQ=255)

                                                                                                                                   accaccTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACTACCAGTAATTTCAATCACTTTAATTCCTTTGTCGCGTAAAAGTTGGTTTGATACATAg          <  2:78546/141‑1 (MQ=255)

                                                                                                                                    ccaccTTTCTAAGTGTAATATCTTCTCTAAATAACGGCCTACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACTACCAGTAATTTCAATCACTTTAATTCCTTTGTCGCGTATAAGTTGGTTTGATACATAGt         <  2:550792/141‑1 (MQ=255)

                                                                                                                                    ccaccTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACTACCAGTAATTTCAATCACTTTAATTCCTTTGTCGCGTAAAAGTTGGTTTGCTAACTAGt         >  1:903099/1‑141 (MQ=255)

                                                                                                                                    ccaccTTTCAAATTTAAATATCTTCTCTAAATAACGCCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTATAAATGCACCAATTTCAATCACTCTAATTCCTTTGTCGCGTAAAAGTTGGTTTGATACATAgc         >  1:995570/1‑140 (MQ=255)

                                                                                                                                    ccaccTTCCAAATTTAAATATCATCCCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACTACCAGTAATTTCAATCACTTTAATTCCTTTGTCGCGTAAAAGTTGGTTTGATACATAGt         <  1:1274493/141‑1 (MQ=255)

                                                                                                                                      accTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACTACCAGTAATTTCAATCACTTTAATCCCTTTGTCGCGTAAAAGTTGGTTTGATCCATAGTTg       >  2:520330/1‑141 (MQ=255)

                                                                                                                                      accTTTCAAATTTAAATATCTTCTATAATAAACAGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACTACCAGTAATTTCAATCACTTTAATTCCTTTGTCGCGTAAAAGTTGGTTTGATCCATAGTTg       >  1:657772/1‑141 (MQ=255)

                                                                                                                                        cTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCCCGTCCACGTACAAGTTCACTACCAGTAATTTCCATCACTTTAATTCCTTTGTCGCGTAAAAGTTCGTTTGATACAGAGTTACg     >  1:1087512/1‑141 (MQ=255)

                                                                                                                                        cTTTCAAATTTAAATATCTTCGCTAAATAACGGCTAAATCATACGTCTTTGGCACCAGAGTCAACGTACACGTTCACTACCAGAACTTTAGATGACTTGATTTCCTTCGTCGCGTAAAAGTAGATTTAATACAGATTTGCg     >  2:372560/1‑141 (MQ=255)

                                                                                                                                           tCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACTACCAGTAATTTCAATCACTTTAATTCCTTTGTCGCGTCAAAGTTGGTTTGATACATAGTTGAGATc  >  2:678330/1‑141 (MQ=255)

                                                                                                                                           tCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACTACCAGTAATTTCAATCACTTTAATTCCTTTGTCGCGTAAAAGTTGGTTTGATACATAGTTGCGATc  >  2:1047824/1‑141 (MQ=255)

TATCATAGAGCCTATGACTAAACCAATTAAGGAAGTTTTACCTAATTTATTTTCATCCATATTAATCTCCCCTAATAAAGGTGGTAAAAATCTTGTTATTTGATTTAATGAATGAATTACTTGTGACTTTTACCACCTTTCAAATTTAAATATCTTCTCTAAATAACGGCTGACTCATACATCTTGGGCCTCCGCGTCCACGTACAAGTTCACTACCAGTAATTTCAATCACTTTAATTCCTTTGTCGCGTAAAAGTTGGTTTGATACATAGTTGCGATC  >  USA300TCH1516_ALE/72914‑73193

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.