BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2699163 =	123 (1.020)	45 (0.390) +TAGTGT	3/268	9.3	26.4%	intergenic (+67/‑224)	copA/copZ	Copper‑exporting P‑type ATPase A/Copper chaperone CopZ
*	?	USA300TCH1516_ALE	= 2699363	139 (1.150)	45 (0.390) +TAGTGT	3/268	9.3	26.4%	intergenic (+267/‑24)	copA/copZ	Copper‑exporting P‑type ATPase A/Copper chaperone CopZ
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 139 total aligned reads displayed.

ACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTCACTTCAGCTGACGTTAACCTTGAAAAT  >  USA300TCH1516_ALE/2699226‑2699503

acacTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATCAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAAAGCCACTAATTATTATAAGTAATAAGTgac                                                                                                                                           >  1:204269/1‑139 (MQ=255)

acacTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGc                                                                                                                                           <  2:1304976/141‑1 (MQ=37)

 cacTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGct                                                                                                                                          <  1:1205291/141‑1 (MQ=37)

 cacTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGct                                                                                                                                          >  1:1246706/1‑141 (MQ=37)

 cacTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGct                                                                                                                                          >  1:1326350/1‑141 (MQ=37)

   cTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGctct                                                                                                                                        >  1:1265001/1‑141 (MQ=37)

   cTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTAGATCTTCGCACCAAAAGCATAAGAGCCACTAATTATTATAAATAATAAGTGGctca                                                                                                                                        >  2:557382/1‑140 (MQ=255)

     aCGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATACATAATAAGTACACTACGGTTGACAGTTGTATCATCGCTCCAAAAGCATAAGAGCCACTAATTATTATAAATAGTAACTGGCTCCaa                                                                                                                                      >  2:587483/1‑141 (MQ=11)

       ggTTTACAGTTGGGTCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTaaaa                                                                                                                                    <  1:505284/141‑1 (MQ=38)

               gTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGa                                                                                                                            <  1:676613/141‑1 (MQ=255)

                 tGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAAt                                                                                                                          >  1:242290/1‑141 (MQ=255)

                 tGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAAt                                                                                                                          >  1:168557/1‑141 (MQ=255)

                   gATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGc                                                                                                                        <  2:218793/141‑1 (MQ=255)

                    aTCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCt                                                                                                                       <  2:974515/141‑1 (MQ=255)

                    aTCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCGAAAAGGAGGTGAATGCt                                                                                                                       <  2:154697/141‑1 (MQ=255)

                     tCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTa                                                                                                                      <  1:739193/141‑1 (MQ=255)

                     acTTCGATCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTa                                                                                                                      <  1:1334439/140‑1 (MQ=255)

                       gaagatCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATg                                                                                                                    >  1:71602/6‑141 (MQ=255)

                           ctacAACTGCATAACAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTcac                                                                                                                <  1:917977/138‑1 (MQ=255)

                           cTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTcac                                                                                                                >  1:1202700/1‑141 (MQ=255)

                           cTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGAGGGGCGTGAAGGAGGTGAATGCTATGTcac                                                                                                                <  1:1362246/141‑1 (MQ=14)

                            tCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTcaca                                                                                                               >  1:962660/1‑141 (MQ=255)

                            tCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTcaca                                                                                                               >  1:1150885/1‑141 (MQ=255)

                            tCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTcaca                                                                                                               <  1:1171289/141‑1 (MQ=255)

                            cccAACGGCATAAGAGCCACTAATTATTATAAATAATAAGTACGCTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTcaca                                                                                                               <  1:601980/140‑1 (MQ=255)

                             ccATCTGCATAAGGGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCTACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACaa                                                                                                              <  2:485731/141‑1 (MQ=255)

                             ccAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACaa                                                                                                              <  2:1032840/141‑1 (MQ=255)

                              cAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACGGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAACTGGCACAAAAAGGAAGTGAATGCTATATCACaaa                                                                                                             >  2:650928/1‑140 (MQ=14)

                                 cTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTTCTAAGaaa                                                                                                          >  2:811918/1‑141 (MQ=255)

                                   gCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAAtt                                                                                                        >  1:169907/1‑141 (MQ=255)

                                               cTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGaa                                                                                            >  1:1028565/1‑141 (MQ=255)

                                                tAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAg                                                                                           <  1:143606/141‑1 (MQ=255)

                                                tAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAg                                                                                           >  1:1068694/1‑141 (MQ=255)

                                                tAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAAGAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAg                                                                                           <  1:1214503/141‑1 (MQ=255)

                                                  attattATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGt                                                                                         >  2:171212/1‑141 (MQ=255)

                                                  attattATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAAATGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAggg                                                                                         >  2:1199619/1‑140 (MQ=255)

                                                   tcattatAAATAATAAGTACCCTACGGTTTACAGTTGGATCTTCGTTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGCGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTa                                                                                        <  2:726425/139‑1 (MQ=255)

                                                    tattatTTATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAACTTTTAAATGTTGAAGGTAt                                                                                       >  1:100672/1‑141 (MQ=255)

                                                          aaataaTAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCtg                                                                                 >  1:1168882/1‑141 (MQ=255)

                                                             taataaGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTGTAAATGTTGAAGGTATGAGCTGTgg                                                                              >  2:358298/1‑141 (MQ=255)

                                                                 aaGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCAc                                                                          >  2:148068/1‑141 (MQ=255)

                                                                 aaGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCAc                                                                          <  2:1114385/141‑1 (MQ=255)

                                                                 aaGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCAc                                                                          >  2:510283/1‑141 (MQ=255)

                                                                  aGTACACTGCGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGCATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACt                                                                         <  1:617721/141‑1 (MQ=255)

                                                                  aGTACACTACGGTTTACAGGTGGAGCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACt                                                                         <  1:277303/141‑1 (MQ=255)

                                                                   gTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTg                                                                        >  1:721924/1‑141 (MQ=255)

                                                                    tACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGc                                                                       <  2:1265001/141‑1 (MQ=255)

                                                                     acacTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCa                                                                      >  1:1137899/1‑141 (MQ=255)

                                                                     acacTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCa                                                                      >  1:1110962/1‑141 (MQ=255)

                                                                     acacTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGCTATTAGCTGTGGTCACTGCa                                                                      >  2:477178/1‑141 (MQ=255)

                                                                       acTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCaaa                                                                    >  1:1223072/1‑141 (MQ=255)

                                                                        cTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCaaaa                                                                   >  2:831956/1‑141 (MQ=255)

                                                                           cGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTg                                                                >  2:1199199/1‑141 (MQ=255)

                                                                            ggTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGc                                                               >  1:331691/1‑141 (MQ=255)

                                                                            ggTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGc                                                               >  2:708381/1‑141 (MQ=255)

                                                                             gTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGACTGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCCAAAGTGCt                                                              >  1:439309/1‑141 (MQ=255)

                                                                             gTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGCCACTGCAAAAGTGCt                                                              >  1:2916/1‑141 (MQ=255)

                                                                               ttACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTCCAAAAGTTCTGt                                                            <  1:967164/141‑1 (MQ=255)

                                                                                  cAGTTGGATCTTCGCTCCAACTGCATAAGCGCCACTAATTATTATAAATAAGATGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGa                                                         >  1:866429/1‑141 (MQ=255)

                                                                                  cAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGa                                                         >  2:915402/1‑141 (MQ=255)

                                                                                  cAGTTGGATCTTCGCTCCAACTGCATAAGAGCCAATAATTATTATCAATAATAAGTGGCTATAAAAGGAGGTGAATGCTATGTCACAAGAAATTGTAACTGTTGACGGAATGAGCTGTGGTCACTGCAAAAGTGCTGTTGa                                                         >  2:776598/1‑141 (MQ=37)

                                                                                   aGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGaa                                                        >  2:532620/1‑141 (MQ=255)

                                                                                        gATCTTCGCTCCAACTGCATAATAGTCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCCCAACAAATTTTAAATGTTGAAGGTATGACCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGc                                                   <  1:359127/141‑1 (MQ=38)

                                                                                               gccccAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAaat                                            <  1:831956/138‑1 (MQ=255)

                                                                                                        gCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGAc                                   >  1:905804/1‑141 (MQ=255)

                                                                                                         cATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTTACg                                  >  2:1043842/1‑141 (MQ=255)

                                                                                                          aTAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACgg                                 <  2:1303629/141‑1 (MQ=255)

                                                                                                          aTAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACgg                                 >  2:760335/1‑141 (MQ=255)

                                                                                                              gcgCCACTAATTGTTATAAATGATAAGGGGCTCTAAAAGGAGGTGGATGCTATGGCACAAGAAATTTTAGATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTc                             <  2:1037238/139‑1 (MQ=255)

                                                                                                              gagCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTc                             <  2:99914/141‑1 (MQ=255)

                                                                                                              gagCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTc                             >  1:395465/1‑141 (MQ=255)

                                                                                                              gagCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTc                             <  1:740978/141‑1 (MQ=255)

                                                                                                              gagCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTc                             <  2:1026577/141‑1 (MQ=255)

                                                                                                              aagCCACTAATTATTATAACTAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTc                             <  2:750764/140‑1 (MQ=255)

                                                                                                              aagCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTc                             <  2:22625/140‑1 (MQ=255)

                                                                                                                  cACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGACTCTGCATTAAATAATATTGACGgtgcagctt                         >  2:1080754/1‑135 (MQ=255)

                                                                                                                  cACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTCACtt                         >  2:1321829/1‑141 (MQ=255)

                                                                                                                  cACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTCACtt                         >  1:1201121/1‑141 (MQ=255)

                                                                                                                  cACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTCACtt                         >  2:395982/1‑141 (MQ=255)

                                                                                                                  cACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTCACtt                         >  2:885714/1‑141 (MQ=255)

                                                                                                                  cACTAATAATTATAAATAATCAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGATGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATCAAATAATATTGACGGTGTCACtt                         >  1:862976/1‑141 (MQ=255)

                                                                                                                         tattctAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGACTCTGCGTTAAATAATATTGACGGTGTCACTTCAGCTGa                  <  1:1300055/141‑1 (MQ=255)

                                                                                                                         tattatAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGGGCTGTGGTCACTGGAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGTGGTCACTTCAGCTGa                  <  2:242290/141‑1 (MQ=255)

                                                                                                                         tattatAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTCACTTCAGCTGa                  <  2:168557/141‑1 (MQ=255)

                                                                                                                         tattatAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTCACTTCAGCTGa                  >  1:230256/1‑141 (MQ=255)

                                                                                                                          attatAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTCACTTCAGCTGAc                 >  2:101897/1‑141 (MQ=255)

                                                                                                                            tataAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGGGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTCACTTCAGCTGACGt               >  1:518452/1‑141 (MQ=255)

                                                                                                                            tataAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCAAAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTCACTTCAGCTGACGt               >  1:518475/1‑141 (MQ=255)

                                                                                                                              taaataaTAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTCACTTCAGCTGACGTTa             >  2:168421/1‑141 (MQ=255)

                                                                                                                              taaataaTAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTCACTTCAGCTGACGTTa             >  2:431364/1‑141 (MQ=255)

                                                                                                                              taaataaTAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTCACTTCAGCTGACGTTa             >  2:279309/1‑141 (MQ=255)

                                                                                                                                    ataaGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTCACTTCAGCTGACGTTAACCTTg       >  2:257355/1‑141 (MQ=255)

                                                                                                                                      aaGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGCGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTCACTTCAGCTGACGTTAACCTTGaa     <  1:311335/141‑1 (MQ=255)

                                                                                                                                      aaGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTTACTTCAGCTGACGTTAACCTTGaa     <  1:999904/141‑1 (MQ=255)

                                                                                                                                      aaGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTCACTTCAGCTGACGTTAACCTTGaa     <  2:331691/141‑1 (MQ=255)

                                                                                                                                      aaGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTCACATCAGCTGACGTTAACCTTGaa     <  1:708381/141‑1 (MQ=255)

                                                                                                                                       aGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATCTTAAATGTTGAAGGCATGAGCTGCGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTCACTTCAGCTGACGTTAACCTTGaaa    >  2:792604/1‑141 (MQ=255)

                                                                                                                                        gTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTCACTTCAGCTGACGTTAACCTTGaaaa   >  1:1376492/1‑141 (MQ=255)

                                                                                                                                        gTGGCTCTAAAAGGAGGTCAATGCTATGTCACAAGAAATTTTAAGTGTTGAAGGGATGAGATATGGTCACTGCAAAAGTGCTGTTGAATCTGCATGAAATAATATTGACGGTGTCACTTCAGCTGACGTTAACCTTGaaaa   >  2:348279/1‑141 (MQ=255)

                                                                                                                                         tGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTCACTTCAGCTGACGTTAACCTTGAAAAt  >  2:654053/1‑141 (MQ=255)

ACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTACACTACGGTTTACAGTTGGATCTTCGCTCCAACTGCATAAGAGCCACTAATTATTATAAATAATAAGTGGCTCTAAAAGGAGGTGAATGCTATGTCACAAGAAATTTTAAATGTTGAAGGTATGAGCTGTGGTCACTGCAAAAGTGCTGTTGAATCTGCATTAAATAATATTGACGGTGTCACTTCAGCTGACGTTAACCTTGAAAAT  >  USA300TCH1516_ALE/2699226‑2699503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.