| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 34173 = | 131 (0.940) | 12 (0.090) | 12/246 | NT | 8.0% | coding (462/480 nt) | rlmH | Ribosomal RNA large subunit methyltransferase H |
| ? | USA300TCH1516_ALE | = 57858 | 151 (1.130) | intergenic (+304/+613) | USA300HOU_RS00240/USA300TCH1516_00049 | hypothetical protein/hypothetical protein | |||||
ACTATGTCAAAAATCATGAACCTCATTACTTATGATAAGCTTCTTAAAAACATAACAGCAATTCACATAAACCTCATATGTTCTGATACATTCAAAATCCCTTTATGAAGCGGCTGAAAAAACCGCATCATTTATGATATGCTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/34318‑34173‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttctGCTTATCAGTTAATGATGCGGTTTTTGAAAAATAACTACAGAAATTTATAGAAGAACAACAAAACTCAAACGCTATATCATATAATAAGTTCTTAGAAGCTTACAAAGTAGACACGTCTTCTGATTAAACTAATACAGT < USA300TCH1516_ALE/57858‑57720 ACTATGTCAAAAATCATGAACCTCATTACTTATGATAAGCTTCTTAAAAACATAACAGCAATTCACATAAACCTCATATGTTCTGATACATTCAAAATCCCTTTATGAAGCGGCTGAAAAAACCGCATCATTTATGATATG > 3:303667/1‑141ACTATGTCAAAAATCATGAACCTCATTACTTATGATAAGCTTCTTAAAAACATAACAGCAATTCACATAAACCTCATATGTTCTGATACATTCAAAATCCCTTTATGAAGCGGCTGAAAAAACCGCATCATTTATGATATG > 2:757767/1‑141ACTATGTCAAAAATCATGAACCTCATTACTTATGATAAGCTTCTTAAAAACATAACAGCAATTCACATAAACCTCATATGTTCTGATACATTCAAAATCCCTTTATGAAGCGGCTGAAAAAACCGCATCATTTATGATATG > 2:233856/1‑141ACTATGTCAAAAATCATGAACCTCATTACTTATGATAAGCTTCTTAAAAACATAACAGCAATTCACATAAACCTCATATGTTCTGATACATTCAAAATCCCTTTATGAAGCGGCTGAAAAAACCGCATCATTTATGATATG < 3:53316/141‑1ACTATGTCAAAAATCATGAACCTCATTACTTATGATAAGCTTCTTAAAAACATAACAGCAATTCACATAAACCTCATATGTTCTGATACATTCAAAATCCCTTTATGAAGCGGCTGAAAAAACCGCATCATTTATGATATG > 4:136624/1‑141 TATGTCAAAAATCATGAACCTCATTACTTATGATAAGCTGCGTAAAAACATGTCAGCTATTCACATTAACCTCATATGTTCTGATACATTCAAAATCCCTTTATGAAGCGGCTGAAAAAACCGCATCATTTATGATATGCT < 1:174520/141‑1 ATGTCAAAAATCATGAACCTCATTACTTATGATAAGCTTCTTAAAAACATAACAGCAATTCACATAAACCTCATATGTTCTGATACATTCAAAATCCCTTTATGAAGCGGCTGAAAAAACCGCATCATTTATGATATGCTT > 1:96575/1‑141 TGTCAAAAATCATGAACCTCATTACTTATGATAAGCTTCTTAAAAACATAACAGCAATTCACATAAACCTCATATGTTCTGATACATTCAAAATCCCTTTATGAAGCGGCTGAAAAAACCGCATCATTTATGATATGCTTC < 2:592129/141‑1 GTCAAAAGTGAGGAACCTCATTACTTATGATAAGCTTCTTAAAAACATAACAGCAATTCACATAAACCTCATATGTTCTGATACATTCAAAATCCCTTTATGAAGCGGCTGAAACAACAACAACATTTATGATATTCTTCT > 4:18754/1‑141 ATGAACCTCATTACTTATGATAAGCTTCTTAAAAACATAACAGCAATTCACATAAACCTCATATGTTCTGATACATTCAAAATCCCTTTATGAAGCGGCTGAAAAAACCGCATCATTTATGATATGCTTCTGCTTATCAGT > 1:451423/1‑141 GAACCTCATTACTTATGATAAGCTTCTTAAAAACATAACAGCAATTCACATAAACCTCATATGTTCTGATACATTCAAAATCCCTTTATGAAGCGGCTGAAAAAACCGCATCATTTATGATATGCTTCTGCTTATCAGTTA > 2:1004734/1‑141 CTCATTACTTATGATAAGCGTCTTAAAAACATAACATCAATTCACATAAACCTCATATGTTCTGATACATTCAAATTCACTTTAAAAAAAAAAAAAAAAAACCGCATCATTTATGATATGCTTCTGCTTATCAGTTAATGA < 2:248483/141‑1 ATTACTTATGATAAGCTTCTTAAAAACATAACAGCAATTCACACAAACCTCATATGTTCTGATACATTCAAAATCCCTTTATGAAGCGGCTGAAAAAACCGCATCATTTATGATATGCTTCTGCGTATCGGTTAATGATGC < 1:938294/141‑1 TTATGAAAAGCTACATAAAAACATAACAGCAATTCACATAAACCTCATATGTTCTGATACATTCAAAATCCCTTTATGAAGCGGCTGAAAAAACCGCATCATTTATGATATGCTTCTGCGTATCGGTTAATGATGCGGTTT < 2:868675/141‑1 TTCTTAAAAACATAACAGCAATTCACATAAACCTCATATGTTCTGATACATTCAAAATCCCTTTATGAAGCGGCTGAAAAAACCGCATCATTTATGATATGCTTCTGCTTATCAGTTAATGATGCGGTTTTTGAAAAATAA > 1:576855/1‑141 ACATAACAGCAATTCACATAAACCTCATATGTTCTGATACATTCAAAATCCCTTTATGAAGCGGCTGAAAAAACCGCATCATTTATGATATGCTTCTGCTTATCAGTTAATGATGCGGTTTTTGAAAAATAACTACAGAAA < 1:1063979/141‑1 ATTCACATAAACCTCATATGTTCTGATACATTCAAAATCCCTTTATGAAGCGGCTGAAAAAACCGCATCATTTATGATATGCTTCTGCTTATCAGTTAATGATGCGGTTTTTGAAAAATAACTACAGAAATTTATAGAAGA < 1:1004734/141‑1 CCTCATATGTTCTGATACATTCAAAATCCCTTTATGAAGCGGCTGAAAAAACCGCATCATTTATGATATGCTTCTGCTTATCAGTTAATGATGCGGTTTTTGAAAAATAACTACAGAAATTTATAGAAGAACAACAAAACT > 3:107364/1‑141 TGAAGCGGCTGAAAAAAACGCTTCAATTATGTTATGCTTCTGCTTATCAGTTAATGATGCGGTTTTTGAAAAATAACTACAGAAATTTATAGAAGAACAACAAAACTCAAACGCTATATCATATAATAAGTTCTTAGAAGC > 2:600570/1‑141 CGCATAATTTATGATATGCTTCTGCTTATCAGTTAATGATGCGGTTTTTGAAAAATAACTACAGAAATTTATAGAAGAACAACAAAACTCAAACGCTATATCATATAATAAGTTCTTAGAAGCTTACAAAGTAGACACGTC > 1:1052774/1‑141 TTATGATATGCTTCTGCTTATCAGTTAATGATGCGGTTTTTGAAAAATAACTACAGAAATTTATAGAAGAACAACAAAACTCAAACGCTATATCATATAATAAGTTCTTAGAAGCTTACAAAGTAGACACGTCTTCTGATT > 1:724/1‑141 ATATGCTTCTGCTTATCAGTTAATGATGCGGTTTTTGAAAAATAACTACAGAAATTTATAGAAGAACAACAAAACTCAAACGCTATATCATATAATAAGTTCTTAGAAGCTTACAAAGTAGACACGTCTTCTGATTAAACT > 3:480560/1‑141 GCTTCTGCTTATCAGTTAATAATGCTGTTTATGAAAAATAACTACAGAAATTTATAGAAGAACAACAAAACTCAACCGCTATATCATATAATAAGTTCTTAGAAGCTTACATAGTGGACACGTCTTCTGATTAAACTAATA < 2:1129778/141‑1 TTCTGCTTATCAGTTAATGATGCGGTTTTTGAAAAATAACTACAGAAATTTATAGAAGAACAACAAAACTCAAACGCTATATCATATAATAAGTTCTTAGAAGCTTACAAAGTAGACACGTCTTCTGATTAAACTAATACA < 1:1112701/141‑1 TTCTGCTTATCAGTTAATGATGCGGTTTTTGAAAAATAACTACAGAAATTTATAGAAGAACAACAAAACTCAAACGCTATATCATATAATAAGTTCTTAGAAGCTTACAAAGTAGACACGTCTTCTGATTAAACTAATACA > 4:97347/1‑141 TCTGCTTATCAGTTAATGATGCGGTTTTTGAAAAATAACTACAGAAATTTATAGAAGAACAACAAAACTCAAACGCTATATCATATAATAAGTTCTTAGAAGCTTACAAAGTAGACACGTCTTCTGATTAAACTAATACAG < 3:440168/141‑1 CTGCTTATCAGTTAATGATGCGGTTTTTGAAAAATAACTACAGCAATTTATAGAAGAACAACAAAACTCAAACGCTATATCATATAATAAGTTCTTAGAAGCTTACAAAGTAGACACGTCTTCTGATTAAACTAATACAGT > 3:102863/1‑141 ACTATGTCAAAAATCATGAACCTCATTACTTATGATAAGCTTCTTAAAAACATAACAGCAATTCACATAAACCTCATATGTTCTGATACATTCAAAATCCCTTTATGAAGCGGCTGAAAAAACCGCATCATTTATGATATGCTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/34318‑34173‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttctGCTTATCAGTTAATGATGCGGTTTTTGAAAAATAACTACAGAAATTTATAGAAGAACAACAAAACTCAAACGCTATATCATATAATAAGTTCTTAGAAGCTTACAAAGTAGACACGTCTTCTGATTAAACTAATACAGT < USA300TCH1516_ALE/57858‑57720 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |