BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	34173 =	131 (0.940)	12 (0.090)	12/246	NT	8.0%	coding (462/480 nt)	rlmH	Ribosomal RNA large subunit methyltransferase H
*	?	USA300TCH1516_ALE	= 57858	151 (1.130)	12 (0.090)	12/246	NT	8.0%	intergenic (+304/+613)	USA300HOU_RS00240/USA300TCH1516_00049	hypothetical protein/hypothetical protein

Only 100 of 164 total aligned reads displayed.

GGCGGATCAAACGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCATGATTTTTGAC  >  USA300TCH1516_ALE/34033‑34313

gggggAGCAAACGGCCTGCACAAGGAGGGCTGAGATCACAGTAACTACGCACTATCATTCAGCAAAATGACATGCCGACGGCAAATGATGCGGGCTGTGTTAATTGAACAGGTGTAAAGGGCACTTAAGATTGTGCgggga                                                                                                                                              <  4:460430/138‑1 (MQ=255)

ggCGGATCAAACGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCgcgga                                                                                                                                              >  2:1151296/1‑141 (MQ=255)

ggCGGATCAAACGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCgagga                                                                                                                                              >  2:471500/1‑141 (MQ=255)

ggCGGATCAAACGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAAGGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCgagga                                                                                                                                              <  1:622816/141‑1 (MQ=255)

 gCGGATCAAACGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCgaggag                                                                                                                                             <  2:783165/141‑1 (MQ=255)

 gCGGATCAAACGGCCTGCACAAGGACGTCGTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCAACATCAAATGATGCGGGTTGTGTTAATGAAACAAATGTATAGACAATTTAAGAATAAGCgtggag                                                                                                                                             <  2:219946/141‑1 (MQ=255)

  ctgtattagtttaatcagaagacgtgtctactttgtaagcttctaagaacttattatatgatatagcgtttgagttttgttgttcttctataaatttctgtagttatttttcaaaaaccgcatcattaactgataagcAGa                                                                                                                                            <  3:440168‑M1/3‑1 (MQ=255)

  cGGATCAAACGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGgaga                                                                                                                                            >  2:1033915/1‑141 (MQ=255)

   tgtattagtttaatcagaagacgtgtctactttgtaagcttctaagaacttattatatgatatagcgtttgagttttgttgttcttctataaatttctgtagttatttttcaaaaaccgcatcattaactgataagcAGaa                                                                                                                                           <  1:1112701‑M1/4‑1 (MQ=255)

   ggATCAATCGGCCTGCACAAGGACGTCTTACAACCCAGTAACTACGCACTATCATTCAGCTAAATGACACTCCCCCGTCAAACGATGCGGGTTGTGTCAATAAAAAAAGTGTACAGAGCATTTAAAATTATGCGAGGAGaa                                                                                                                                           <  4:243451/141‑1 (MQ=255)

    gATCAAACGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAg                                                                                                                                          >  1:30959/1‑141 (MQ=255)

     tattagtttaatcagaagacgtgtccactatgtaagcttctaagaacttattatatgatatagcggttgagttttgttgttcttctataaatttctgtagttatttttcataaacagcattattaactgataagcAGAAGc                                                                                                                                         <  2:1129778‑M1/6‑1 (MQ=255)

     aTCAAACGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACAATCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAATGTACAGAGCATTTAAGATTATGCGAGGAGGAGc                                                                                                                                         <  4:394941/141‑1 (MQ=255)

      tCAAACGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGcg                                                                                                                                        <  2:991008/141‑2 (MQ=255)

      tCAAACGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCa                                                                                                                                        <  2:734072/141‑1 (MQ=255)

      tCAAACGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCa                                                                                                                                        <  3:220880/141‑1 (MQ=255)

           cGGCCTGCACATGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAAAGGTGCGGGTTGTGTGAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGGAGCATATCa                                                                                                                                   <  4:454696/141‑1 (MQ=255)

              ccTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATaa                                                                                                                                <  3:259386/141‑1 (MQ=255)

              ccTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATaa                                                                                                                                >  1:222183/1‑141 (MQ=255)

                  cacaAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAatga                                                                                                                            >  1:403561/1‑141 (MQ=255)

                      gacgtgtctactttgtaagcttctaagaacttattatatgatatagcgtttgagttttgttgttcttctataaatttctgtagttatttttcaaaaaccgcatcattaactgataagcAGAAGCATATCATAAATTATGCg                                                                                                                        >  1:1052774‑M1/119‑141 (MQ=255)

                      aGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCg                                                                                                                        <  2:88118/141‑1 (MQ=255)

                      aGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCg                                                                                                                        >  4:263616/1‑141 (MQ=255)

                        gACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGt                                                                                                                      >  1:376733/1‑141 (MQ=255)

                          cGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGttt                                                                                                                    <  2:232499/141‑1 (MQ=255)

                           gTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAATTGATGCGGtttt                                                                                                                   >  1:718792/1‑141 (MQ=255)

                             cTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGtttttt                                                                                                                 >  2:563993/1‑141 (MQ=255)

                             cTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGtttttt                                                                                                                 >  2:239947/1‑141 (MQ=255)

                              ttACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTc                                                                                                                >  1:78886/1‑141 (MQ=255)

                              ttACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTc                                                                                                                >  3:493349/1‑141 (MQ=255)

                                aCAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAg                                                                                                              <  4:282645/141‑1 (MQ=255)

                                   aCGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCg                                                                                                           <  4:389886/141‑1 (MQ=255)

                                        gcttctaagaacttattatatgatatagcgtttgagttttgttgttcttctataaatttctgtagttatttttcaaaaaccgcatcattaactgataagcAGAAGCATAACATAATTGAAGCGTTTTTTTCAGCCGCTTCa                                                                                                      >  2:600570‑M1/101‑141 (MQ=255)

                                              aCGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAgg                                                                                                <  1:732471/141‑1 (MQ=255)

                                              aCGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCAGATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAgg                                                                                                <  2:752913/141‑1 (MQ=255)

                                              aCGCACTATCATTCAGCAAAATGACATTCCAACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAACgg                                                                                                >  2:100497/1‑141 (MQ=255)

                                               cGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAggg                                                                                               <  1:163555/141‑1 (MQ=255)

                                               cGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAggg                                                                                               <  3:385289/141‑1 (MQ=255)

                                                    tATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGAtttt                                                                                          <  3:263616/141‑1 (MQ=255)

                                                     aTCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTCATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATGTTg                                                                                         >  1:784670/1‑141 (MQ=255)

                                                      tCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGa                                                                                        >  4:333377/1‑141 (MQ=255)

                                                      tCAATCANAAAAATGAAATACACACATCCCATCACGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGCGCAGCCTAAAAAAACAGACCCCGTTTCTTCAGCCGCTCCATAACGGGATTTTGa                                                                                        <  2:894503/141‑1 (MQ=255)

                                                       cATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGaa                                                                                       <  2:320959/141‑1 (MQ=255)

                                                           cAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAGTTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTa                                                                                   <  2:115939/141‑1 (MQ=255)

                                                           cAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTa                                                                                   <  2:47446/141‑1 (MQ=255)

                                                               aaaaTGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCTTATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAg                                                                               >  1:675554/1‑141 (MQ=255)

                                                                aaaTGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCaaa                                                                              <  2:728580/141‑3 (MQ=255)

                                                                 aaTGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGaa                                                                             >  3:161141/1‑141 (MQ=255)

                                                                  aTGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAAc                                                                            <  2:103799/141‑1 (MQ=255)

                                                                  aTGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTGTGAATGTATCAGAAc                                                                            >  1:907364/1‑141 (MQ=255)

                                                                     aCATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGGGGCATAGCAGAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACata                                                                         >  1:237276/1‑141 (MQ=255)

                                                                     aCATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACata                                                                         >  2:1064654/1‑141 (MQ=255)

                                                                     aCATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACata                                                                         >  1:1046758/1‑141 (MQ=255)

                                                                      cATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAGCAAGTGTATAGAGCATTTAAGATTATGCGTGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACatat                                                                        <  1:162541/141‑1 (MQ=255)

                                                                      cATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACatat                                                                        <  1:521170/141‑1 (MQ=255)

                                                                      cATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTCTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACatat                                                                        >  1:52943/1‑141 (MQ=255)

                                                                        ttCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGa                                                                      >  2:1104547/1‑141 (MQ=255)

                                                                        ttCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGa                                                                      <  3:1882/141‑1 (MQ=255)

                                                                        ttCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGAATTTGAATGTATCAGAACATATGa                                                                      >  2:174336/1‑141 (MQ=255)

                                                                          agttttgttgttcttctataaatttctgtagttatttttcaaaaaccgcatcattaactgataagcAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAgg                                                                    >  3:107364‑M1/67‑141 (MQ=255)

                                                                           ccACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGt                                                                   <  4:125009/141‑1 (MQ=255)

                                                                            cacaTCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGtt                                                                  >  2:660312/1‑141 (MQ=255)

                                                                               atcatttgatgTGGGTTGTGTTAATTGAACACGTGTACAGAGCATTTAAGATTATGCGAGGAGACGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTAt                                                               >  4:239109/7‑141 (MQ=38)

                                                                                tCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTAtg                                                              <  2:625062/141‑1 (MQ=255)

                                                                                tCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTAtg                                                              <  3:200416/141‑1 (MQ=255)

                                                                                 cAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTAtgt                                                             <  4:377316/141‑1 (MQ=255)

                                                                                  aaaTGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTAtgtg                                                            <  1:659045/141‑1 (MQ=255)

                                                                                    atgatgCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGTATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGATTATGTGaa                                                          >  2:207824/1‑141 (MQ=255)

                                                                                    atgatgCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGaa                                                          <  1:1180633/141‑1 (MQ=255)

                                                                                     tgatgCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAAt                                                         <  2:99148/141‑1 (MQ=255)

                                                                                     tcttctataaatttctgtagttatttttcaaaaaccgcatcattaactgataagcAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAAt                                                         <  1:1004734‑M1/86‑1 (MQ=255)

                                                                                         gCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCt                                                     >  1:436433/1‑141 (MQ=255)

                                                                                             gTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTa                                                 <  3:307179/141‑1 (MQ=255)

                                                                                                tttctgtagttatttttcaaaaaccgcatcattaactgataagcAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGt                                              <  1:1063979‑M1/97‑1 (MQ=255)

                                                                                                  gtTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGttt                                            <  1:887005/141‑1 (MQ=255)

                                                                                                      aTTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTaa                                        <  3:429902/141‑1 (MQ=255)

                                                                                                        tGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTaata                                      <  1:930912/141‑3 (MQ=255)

                                                                                                            cAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCt                                  >  2:928669/1‑141 (MQ=255)

                                                                                                             aaGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATGTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCtt                                 >  1:1129168/1‑141 (MQ=255)

                                                                                                               gtgtACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTAt                               <  2:412702/141‑1 (MQ=255)

                                                                                                                   aCAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATa                           >  2:705769/1‑141 (MQ=255)

                                                                                                                   aCAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATa                           >  1:998559/1‑141 (MQ=255)

                                                                                                                    aaaccgcatcattaaccgatacgcAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTATGTAGCTTTTCATaa                          <  2:868675‑M1/117‑1 (MQ=255)

                                                                                                                         gcatcattaaccgatacgcAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTGTGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAAt                     <  1:938294‑M1/122‑1 (MQ=255)

                                                                                                                          aTTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATg                    <  1:229047/141‑1 (MQ=255)

                                                                                                                           tttAAGATTATGCGAGGAGAAGCCTATCAGAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGa                   >  1:279132/1‑141 (MQ=255)

                                                                                                                           tttAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGa                   >  2:510360/1‑141 (MQ=255)

                                                                                                                           tttAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAAGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAAttt                   >  4:359445/1‑139 (MQ=255)

                                                                                                                            tcattaactgataagcAGAAGCATATCATAAATGATGCGGTTTTTTTTTTTTTTTTTTAAAGTGAATTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGATGTTATGTTTTTAAGACGCTTATCATAAGTAATGAg                  <  2:248483‑M1/125‑1 (MQ=255)

                                                                                                                              aaGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGt                <  3:237273/141‑1 (MQ=255)

                                                                                                                                gATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTc              >  4:103708/1‑141 (MQ=255)

                                                                                                                                 aTTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCa             <  1:962968/141‑1 (MQ=255)

                                                                                                                                  ttATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCAt            >  2:387111/1‑141 (MQ=255)

                                                                                                                                  ttATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTAATCATAAGTAATGAGGTTCAt            <  4:483029/141‑1 (MQ=255)

                                                                                                                                     tGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCATGAt         >  3:59721/1‑141 (MQ=255)

                                                                                                                                     tGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCATGAt         >  1:739381/1‑141 (MQ=255)

                                                                                                                                        gaggagAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCATGGtttt      <  2:693108/141‑1 (MQ=255)

                                                                                                                                         aggagAAGCATATCATAAATGATGCGGTTTTTTCATCCGCTTAATAAAGGGATTTTGAATGTATCAGAACATATGAGGGTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCATGAttttt     >  1:1024770/1‑141 (MQ=255)

                                                                                                                                          ggagAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCATGATTTTTg    >  1:193996/1‑141 (MQ=255)

                                                                                                                                            AGAAGAATATCATAAATGTTGTTGTTGTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCCTCACTTTTGAc  >  4:18754‑M1/1‑141 (MQ=255)

GGCGGATCAAACGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCATGATTTTTGAC  >  USA300TCH1516_ALE/34033‑34313

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.