| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2545705 = | 160 (1.140) | 5 (0.040) | 5/234 | NT | 3.6% | intergenic (+6/+46) | hlgB/USA300HOU_RS13110 | Gamma‑hemolysin component B/hypothetical protein |
| ? | USA300TCH1516_ALE | 2545745 = | 122 (0.960) | intergenic (+46/+6) | hlgB/USA300HOU_RS13110 | Gamma‑hemolysin component B/hypothetical protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGTAGTGTTGTTAAACGCGATTCCAGGCGTAATATTCACTTTAATTGTAGCTATTCCTTTATATCTCACATTGAGAAAAAGAATGGCAGTATTACTAAGATAATAAATCAAAACACGGTCGTC‑ACAATTACTGTTGGCGACCGTGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2545853‑2545705‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaccgtgttttGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATCGCGTTTAACAACACTACCCACACAGGTAAATTTAAAATAATAGATAAT > USA300TCH1516_ALE/2545745‑2545883 GGTAGTGTTGTTAAACGCGATTCCAGGCGTAATATTCACTTTAATTGTAGCTATTCCTTTATATCTCACATTGAGAAAAAGAATGGCAGTATTACTAAGATAATAAATCAAAACACGGTCGTC‑ACAATTACTGTTGGCGAC > 1:808469/1‑141 TAGTGTTGTTAAACGCGATTCCAGGCGTAATATTCACTTTAATTGTAGCTATTCCTTTATATCTCACATTGAGAAAAAGAATGGCAGTATTACTAAGATAATAAATCAAAACACGGTCGTC‑ACAATTACTGTTGGCGACCG > 1:201427/1‑141 AGTGTTGTTAAACGCGATTCCAGGCGTAATATTCACTTTAATTGTAGCTATTCCTTTATATCTCACATTGAGAAAAAGAATGGCAGTATTACTAAGATAATAAATCAAAACACGGTCGTC‑ACAATTACTGTTGGCGACCGT < 3:470139/141‑1 GTGTTGTTAAACGCGATTCCAGGCGTAATATTCACTTTAATTGTAGCTATTCCTTTATATCTCACATTGAGAAAAAGAATGGCAGTATTACTAAGATAATAAATCAAAACACGGTCGTC‑ACAATTACTGTTGGCGACCGTG < 2:795817/141‑1 TGTTAAACGCGATTCCAGGCGTAATATTCACTTTAATTGTAGCTATTCCTTTATATCTCACATTGAGAAAAAGAATGGCAGTATTACTAAGATAATAAATCAAAACACGGTCGTC‑ACAATTACTGTTGGCGACCGTGTTTT < 2:882133/141‑1 TTTAATTGTAGCTATTCCTTTATATCTCACATTGAGAAAAAGAATGGCAGTATTACTAAGATAATAAATCAAAACACGGTCGCCAACAGTAATTG‑TGACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTT < 3:274525/141‑1 ATTGTAGCTATTCCTTTATATCTCACATTGAGAAAAAGAATGGCAGTATTACTAAGATAATAAATCAAAACACGGTCGCCAACAGTAATTG‑TGACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCA > 1:171094/1‑132 ATTGTAGCTATTCCTTTATATCTCACATTGAGAAAAAGAATGGCAGTATTACTAAGATAATAAATCAAAACACGGTCGCC‑AACAGTAATTGTGACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCA < 2:171094/132‑1 CTTTATATCTCACATTGAGAAAAAGAATGGCAGTATTACTAAGATAATAAATCAAAACACGGTCGCCAACAGTAATTG‑TGACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATA < 1:485778/141‑1 TTACTGTTGGCGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATCGCGTTTAACAACACTACCCACACAGGTA > 4:74686/1‑141 cgtCCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACGATTAAAGTGAATATTACGCCTGGAATCGCGTTTAACAACACTACCCACACAGGTAAATTTAAAAT < 1:845118/138‑1 cgtCCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATCGCGTTTAACAACACTACCCACACAGGTAAATTTAAAAT < 1:844989/138‑1 CGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATCCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATCGCGTTTAACAACACTACCCACACATGTAAATTTAAAAT < 1:881159/141‑1 ACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATCGCGTTTAACAACACTACCCACACAGGTAAATTTAAAATAA > 1:167745/1‑141 GTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATCGCGTTTAACAACACTACCCACACAGGTAAATTTAAAATAATAGAT < 2:830602/141‑1 TTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATCGCGTTTAACAACACTACCCACACAGGTAAATTTAAAATAATAGATAA > 2:613183/1‑141 TTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATCGCGTTTAACAACACTACCCACACAGGTAAATTTAAAATAATAGATAA > 1:151696/1‑141 TTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATCGCGTTTAACAACACTACCCACACAGGTAAATTTAAAATAATAGATAA < 1:386908/141‑1 TTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTTTATGTGTGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATCGCGTTTAACAACACTACCCACACAGGTAAATTTAAAATAATAGATAAT > 2:209304/1‑141 GGTAGTGTTGTTAAACGCGATTCCAGGCGTAATATTCACTTTAATTGTAGCTATTCCTTTATATCTCACATTGAGAAAAAGAATGGCAGTATTACTAAGATAATAAATCAAAACACGGTCGTC‑ACAATTACTGTTGGCGACCGTGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2545853‑2545705‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaccgtgttttGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATCGCGTTTAACAACACTACCCACACAGGTAAATTTAAAATAATAGATAAT > USA300TCH1516_ALE/2545745‑2545883 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |