New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2545705 =160 (1.140)5 (0.040) 5/234 NT 3.6% intergenic (+6/+46) hlgB/USA300HOU_RS13110 Gamma‑hemolysin component B/hypothetical protein
?USA300TCH1516_ALE 2545745 = 122 (0.960)intergenic (+46/+6) hlgB/USA300HOU_RS13110 Gamma‑hemolysin component B/hypothetical protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 164 total aligned reads displayed.

TTAAAACTAGAACATTTAAATCAACATATGAAATTGATTGGGAAAATCACAAAGTGAAATTGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATCGCGTTTAACAACACTACCCACACAGGTAAATTTAAAATAATAGATAAT  >  USA300TCH1516_ALE/2545605‑2545883
                                                                                                                                             |                                                                                                                                          
  aaaaCTAGAACATTTAAATCAACATATGAAATTGATTGGGAAAATCACAAAGTGAAATTGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGAt                                                                                                                                          <  1:968063/141‑1 (MQ=255)
  aaaaCTAGAACATTTAAATCAACATATGAAATTGATTGGGAAAATCACAAAGTGAAATTGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGAt                                                                                                                                          <  1:86277/141‑1 (MQ=255)
   aaaCTAGAACATTTAAATCAACATATGAAATTGATTGGGAAAATCACAAAGTGAAATTGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGAtt                                                                                                                                         >  1:1026548/1‑141 (MQ=255)
    aaCTAGAACATTTAAATCAACATATGAAATTGATTGGGAAAATCACAAAGTGAAATTGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGAttt                                                                                                                                        >  1:1029731/1‑141 (MQ=255)
    aaCGAGAACAGTTAAATCAACATATGAAATTGATTGGGAAAATCACAAAGTGAAATTGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGAttt                                                                                                                                        <  4:73032/141‑1 (MQ=255)
         gAACATTTAAATCAACATATGAAATTGATTGGGAAAATCACAAAGTGAAATTGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTtattat                                                                                                                                   >  2:808469/1‑141 (MQ=255)
             aTTTAAATCAACATATGAAATTGATTGGGAAAATCACAAAGTGAAATTGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTAT‑GACGACCGTGTTTTGATTTATTATCTTa                                                                                                                               <  1:301941/141‑1 (MQ=255)
                  aaTCAACATATGAAATTGATTGGGAAAATCACAAAGTGAAATTGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAAt                                                                                                                          >  2:386908/1‑141 (MQ=255)
                  aaTCAACATATGAAATTGATTGGGAAAACCACAAAGTGAAATTGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGCGTTTTGCTTTATTATCTTAGTAAt                                                                                                                          >  4:26439/1‑141 (MQ=255)
                     cAACATATGAAATTGATTGGGAAAATCACAAAGTGAAATTGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACt                                                                                                                       <  2:757868/141‑1 (MQ=255)
                       aCATATGAAATTGATTGGGAAAATCACAAAGTGAAATTGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGc                                                                                                                     >  2:770741/1‑141 (MQ=255)
                        cATATGAAATTGATTGGGAAAATCACAAAGTGAAATTGTTAGATACAAAAGCAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGCTTTGATTTATTATCTTAGTTATACTGcc                                                                                                                    >  2:253427/1‑141 (MQ=255)
                        cATATGAAATTGATTGGGAAAATCACAAAGTGAAATTGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGcc                                                                                                                    <  1:33652/141‑1 (MQ=255)
                        cATATGAAATTGATTGGGAAAATCACAAAGTGAAATTGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGcc                                                                                                                    <  2:473421/141‑1 (MQ=255)
                          tatGAAATTGATTGGGAAAATCACAAAGTGAAATTGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCAt                                                                                                                  >  2:1086734/1‑141 (MQ=255)
                           catatgttgattgGGAAAATCACAAAGTGAAATTGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGACGCCAACAGCAATTGT‑GACGACCGAGTTTTGATTTATTAGCGTAGTAATACTGCCAtt                                                                                                                 >  2:507175/7‑141 (MQ=255)
                            tGAAATTGATTGGGAAAATCACAAAGTGAAATTGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑AACGACCGTGTTTTGATTTATTATCTTAGTTATACTGCCATTc                                                                                                                >  4:427780/1‑141 (MQ=255)
                             gAAAATGATTGAGAAAATCACAAAGTGAAATTGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCt                                                                                                               <  2:352229/141‑1 (MQ=255)
                              aaaTTGATTGGGAAAATCACAAAGTGAAATTGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCtt                                                                                                              <  3:346553/141‑1 (MQ=255)
                               aaTTGATTGGGAAAATCACAAAGTGAAATTGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCttt                                                                                                             >  2:474485/1‑141 (MQ=255)
                               aaTTGATTGGGAAAATCACAAAGTGAAATTGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCttt                                                                                                             <  4:196190/141‑1 (MQ=255)
                                  tgattgGGAAAATCACAAAGTGAAATTGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTtc                                                                                                          <  2:715294/141‑1 (MQ=255)
                                   gattgGGAAAATCACAAAGTGAAATTGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTtct                                                                                                         <  3:94868/141‑1 (MQ=255)
                                   gattgGGAAAATCACAAAGTGAAATTGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTtct                                                                                                         <  2:165284/141‑1 (MQ=255)
                                   attgtagctattcctttatatctcacattgagaaaaagaatggcagtattactaagataataaatcaaaacacggtcgccaacagtaattgtgacgaccgtgttttGATTTATTATCTTAGTAATACTGCCa                                                                                                                   >  1:171094‑M2/107‑132 (MQ=255)
                                      tgGGAAAATCACAAAGTGAAATTGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCaa                                                                                                      >  4:100354/1‑141 (MQ=255)
                                         gAAAATCACAAAGTGAAATTGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAAtgt                                                                                                   >  3:448982/1‑141 (MQ=255)
                                           aactCACAAAGTGAAATTGTTAGATACAAAAGAACCTGAAAACAATAAATAGCTGGTATAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTga                                                                                                 <  2:1113780/138‑1 (MQ=255)
                                           aaaTCACAAAGTGAAATTGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTga                                                                                                 <  1:560364/141‑1 (MQ=255)
                                           aaaTCACAAAGTGAAATTGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTga                                                                                                 >  2:1044225/1‑141 (MQ=255)
                                            aaTCACAAAGTGAAATTGTTAGATACAAAAGAATCTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTgag                                                                                                <  2:364931/141‑1 (MQ=255)
                                             aTCACAAAGTGAAATTGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTgaga                                                                                               >  4:264424/1‑141 (MQ=255)
                                               cacaAAGTGAAATTGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGata                                                                                             >  2:629589/1‑141 (MQ=255)
                                                 caAAGTGAAATTGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGAtata                                                                                           >  1:560879/1‑141 (MQ=255)
                                                 caAAGTGAAATTGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGAtata                                                                                           <  2:924419/141‑1 (MQ=255)
                                                 caAAGTGAAATTGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAAGACTGCCATTCTTTTTCTCAATGTGAGAtata                                                                                           <  2:72203/141‑1 (MQ=255)
                                                  aaaGTGAAATTGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATaa                                                                                          >  1:901985/1‑141 (MQ=255)
                                                  aaaGTGAAATTGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATaa                                                                                          >  4:442040/1‑141 (MQ=255)
                                                    tatctcacattgagaaaaagaatggcagtattactaagataataaatcAAAACACGGTCGTCA‑CAATTACTGTTGGCGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAg                                                                                        <  1:485778‑M1/93‑1 (MQ=255)
                                                    aGTGAAATTGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAg                                                                                        <  2:187217/141‑1 (MQ=255)
                                                         aaTTGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATa                                                                                   >  3:288081/1‑141 (MQ=255)
                                                          aTTGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAg                                                                                  >  1:896773/1‑141 (MQ=255)
                                                            tGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCt                                                                                <  3:85848/141‑1 (MQ=255)
                                                            tGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCt                                                                                >  3:98945/1‑141 (MQ=255)
                                                              ttAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTAc                                                                              <  2:304994/141‑1 (MQ=255)
                                                               tAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑TACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACa                                                                             <  3:32156/141‑1 (MQ=255)
                                                                 gATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGATACAAt                                                                           >  3:314015/1‑141 (MQ=255)
                                                                  aTACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAAtt                                                                          <  1:658763/141‑1 (MQ=255)
                                                                  aTACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAAtt                                                                          <  2:954650/141‑1 (MQ=255)
                                                                     aagaatggcagtattactaagataataaatcAAAACACGGTCGTCA‑CAATTACTGTTGGCGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTaaa                                                                       <  3:274525‑M1/110‑1 (MQ=255)
                                                                      aaaaGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAg                                                                      <  2:1002855/141‑1 (MQ=255)
                                                                       aaaGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGt                                                                     <  1:853391/141‑1 (MQ=255)
                                                                         aGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGa                                                                   >  4:394031/1‑141 (MQ=255)
                                                                         aGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGa                                                                   >  2:23287/1‑141 (MQ=255)
                                                                          tggcagtattactaagataataaatcAAAACACGGTCGTCACAATTACTGTT‑GGCGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAAt                                                                           <  2:171094‑M1/106‑1 (MQ=255)
                                                                          gAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGaa                                                                  >  1:665560/1‑141 (MQ=255)
                                                                             aCTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAatat                                                               >  3:405068/1‑141 (MQ=255)
                                                                                 aaaaCAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACg                                                           >  3:24854/1‑141 (MQ=255)
                                                                                 aaaaCAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACg                                                           >  3:313467/1‑141 (MQ=255)
                                                                                 aaaaCAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATAGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACg                                                           >  2:874775/1‑141 (MQ=255)
                                                                                  aaaCAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGc                                                          >  3:379386/1‑141 (MQ=255)
                                                                                    aCAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCt                                                        <  1:807856/141‑1 (MQ=255)
                                                                                    aCAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCt                                                        <  4:174123/141‑1 (MQ=255)
                                                                                    aCAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCt                                                        <  4:216384/141‑1 (MQ=255)
                                                                                      aataaataGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTgg                                                      >  1:830602/1‑141 (MQ=255)
                                                                                       ataaataGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGa                                                     <  2:1102753/141‑1 (MQ=255)
                                                                                        taaataGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGaa                                                    >  1:19067/1‑141 (MQ=255)
                                                                                         aaataGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAAt                                                   <  1:219744/141‑1 (MQ=255)
                                                                                          aataGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATc                                                  >  1:833478/1‑141 (MQ=255)
                                                                                          aataGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATc                                                  >  1:254250/1‑141 (MQ=255)
                                                                                          aataGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATc                                                  <  2:1029731/141‑1 (MQ=255)
                                                                                            taGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTCTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATcgc                                                >  1:1150859/1‑141 (MQ=255)
                                                                                             aGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATcgcg                                               <  1:398957/141‑1 (MQ=255)
                                                                                              gCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATCGCGt                                              <  1:814815/141‑1 (MQ=255)
                                                                                               cTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGCTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATCGCGtt                                             >  3:33574/1‑141 (MQ=255)
                                                                                                    AAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATCGCGTTTaaca                                        <  2:882133‑M1/141‑1 (MQ=255)
                                                                                                        CACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATCGCGTTTAACAacac                                    <  2:795817‑M1/141‑1 (MQ=255)
                                                                                                         ACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATCGCGTTTAACAACACt                                   <  3:470139‑M1/141‑1 (MQ=255)
                                                                                                                ccAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATCGCGTTTAACAACACTACCcaca                            >  2:129397/1‑141 (MQ=255)
                                                                                                                 cAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATCGCGTTTAACAACACTACCcacac                           >  1:1148205/1‑141 (MQ=255)
                                                                                                                  aaCAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATCGCGTTTAACAACACTACCcacaca                          >  3:139160/1‑141 (MQ=255)
                                                                                                                   aCAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATCGCGTTTAACAACACTACCCACACAg                         <  4:135473/141‑1 (MQ=255)
                                                                                                                    cAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATCGCGTTTAACAACACTACCCACACAgg                        >  2:796787/1‑141 (MQ=255)
                                                                                                                     aGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATCGCGTTTAACAACACTACCCACACAGGt                       <  3:140625/141‑1 (MQ=255)
                                                                                                                     aGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATCGCGTTTAACAACACTACCCACACAGGt                       <  1:205741/141‑1 (MQ=255)
                                                                                                                     aGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATCGCGTTTAACAACACTACCCACACAGGt                       <  1:791715/141‑1 (MQ=255)
                                                                                                                      gTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATCGCGTTTAACAACACTACCCACACAGGTa                      <  2:586802/141‑1 (MQ=255)
                                                                                                                      gTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATCGCGTTTAACAACACTACCCACACAGGTa                      >  1:18068/1‑141 (MQ=255)
                                                                                                                          ttGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATCGCGTTTAACAACACTACCCACACAGGTAAAtt                  <  1:486670/141‑1 (MQ=255)
                                                                                                                           tgt‑gACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATCGCGTTTAACAACACTACCCACACAGGTAAAttt                 <  1:960684/141‑1 (MQ=255)
                                                                                                                             t‑gACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATCGCGTTTAACAACACTACCCACACAGGTAAATTTaa               <  1:748028/141‑1 (MQ=255)
                                                                                                                             t‑gACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATCGCGTTTAACAACACTACCCACACAGGTAAATTTaa               <  3:242783/141‑1 (MQ=255)
                                                                                                                               gacgacCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATCGCGTTTAACAACACTACCCACACAGGTAAATTTaaa              <  3:5149/141‑1 (MQ=255)
                                                                                                                               gacgacCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATCGCGTTTAACAACACTACCCACACAGGTAAATTTaaa              >  3:414133/1‑141 (MQ=255)
                                                                                                                               gacgacCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATCGCGTTTAACAACACTACCCACACAGGTAAATTTaaa              >  1:630766/1‑141 (MQ=255)
                                                                                                                                acgacCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTTTTTTTTTTTTTTATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATCGCGTTTAACAACACTACCCACACAGGTAAATTTaaaa             >  2:204049/1‑141 (MQ=255)
                                                                                                                                 cgtccgtgttttGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACGATTAAAGTGAATATTACGCCTGGAATCGCGTTTAACAACACTACCCACACAGGTAAATTTAAaat            <  1:845118‑M2/129‑1 (MQ=255)
                                                                                                                                 cgaccgtgttttGATTTATTATCTTAGTAATACTGCCATCCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATCGCGTTTAACAACACTACCCACACATGTAAATTTAAaat            <  1:881159‑M2/129‑1 (MQ=255)
                                                                                                                                   accgtgttttGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATCGCGTTTAACAACACTACCCACACAGGTAAATTTAAaataa          >  1:167745‑M2/11‑141 (MQ=255)
                                                                                                                                          tttGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATCGCGTTTAACAACACTACCCACACAGGTAAATTTAAAataatagataa   >  2:613183‑M2/4‑141 (MQ=255)
                                                                                                                                             |                                                                                                                                          
TTAAAACTAGAACATTTAAATCAACATATGAAATTGATTGGGAAAATCACAAAGTGAAATTGTTAGATACAAAAGAAACTGAAAACAATAAATAGCTAGTAAAACACGGTCGCCAACAGTAATTGT‑GACGACCGTGTTTTGATTTATTATCTTAGTAATACTGCCATTCTTTTTCTCAATGTGAGATATAAAGGAATAGCTACAATTAAAGTGAATATTACGCCTGGAATCGCGTTTAACAACACTACCCACACAGGTAAATTTAAAATAATAGATAAT  >  USA300TCH1516_ALE/2545605‑2545883

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.