| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2579488 = | 145 (1.040) | 3 (0.020) | 3/244 | NT | 2.1% | coding (761/1638 nt) | yveA | Aspartate‑proton symporter |
| ? | USA300TCH1516_ALE | 2579549 = | 142 (1.070) | coding (822/1638 nt) | yveA | Aspartate‑proton symporter | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TAGTAAAATTGCGAGCCAATTAATTCCTAATAAGATAGCTAAATCAGCAAATGGTGAATTGAAGTTGATGCCATTCCATCCACTATGTTGTAACATTGATTGAGGCATAGAAGTGATAAACGTACTTTGTAAAATGATGTACAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2579633‑2579488‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacaacaTAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCTTTTGTATCACCATTCGGTACTGGCGTGTCATTTGTCGCCGTT > USA300TCH1516_ALE/2579549‑2579687 TAGTAAAATTGCGAGCCAATTAATTCCTAATAAGATAGCTAAATCAGCAAATGGTGAATTGAAGTTGATGCCATTCCATCCACTATGTTGTAACATTGATTGAGGCATAGAAGTGATAAACGTACTTTGTAAAATGATGTA > 1:767319/1‑141TAGTAAAATTGCGAGCCAATTAATTCCTAATAAGATAGCTAAATCAGCAAATGGTGAATTGAAGTTGATGCCATTCCATCCACTATGTTGTAACATTGATTGAGGCATAGAAGTGATAAACGTACTTTGTAAAATGATGTA > 1:823768/1‑141 AGTAAAATTGCGAGCCAATTAATTCCTAATAAGATAGCTAAATCAGCAAATGGTGAATTGAAGTTGATGCCATTCCATCCACTATGTTGTAACATTGATTGAGGCATAGAAGTGATAAACGTACTTTGTAAAATGATGTAC < 2:1143977/141‑1 AAAATTGCGAGCCAATTAATTCCTAATAAGATAGCTAAATCAGCAAATGGTGAATTGAAGTTGATGCCATTCCATCCACTATGTTGTAACATTGATTGAGGCATAGAAGTGATAAACGTACTTTGTAAAATGATGTACAAC > 2:508951/1‑141 AAATTGCGAGCCAATTAATTCCTAATAAGATAGCTAAATCAGCAAATGGTGAATTGAAGTTGATGCCATTCCATCCACTATGTTGTAACATTGATTGAGGCATAGAAGTGATAAACGTACTTTGTAAAAGGATGTACAACA > 3:162084/1‑141 GTTGTAACATTGATTGAGGCATAGAAGTGATAAACGTGCTTTGTAAAATGATGTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTT > 1:861456/1‑141 TTGTAACATTGATTGAGGCATAGAAGTGATAAACGTACTTTGTAAAATGATGTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAAT < 1:70949/122‑1 TTGTAACATTGATTGAGGCATAGAAGTGATAAACGTACTTTGTAAAATGATGTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAAT > 2:70949/1‑122 TACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCTTTTGTATCACCATTCGGTACTGGCGTGTCATTTGTCG < 4:141105/141‑1 ACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCTTTTGTATCACCATTCGGTACTGGCGTGTCATTTGTCGC > 2:577736/1‑141 CAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCTTTTGTATCACCATTCGGTACTGGCGTGTCATTTGTCGCC > 2:697810/1‑141 AACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCTTTTGTATCACCATTCGGTACTGGCGTGTCATTTGTCGCCG > 4:225743/1‑141 ACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCTTTTGTATCACCATTCGGTACTGGCGTGTCATTTGTCGCCGT > 2:1112916/1‑141 ACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCTTTTGTATCACCATTCGGTACTGGCGTGTCATTTGTCGCCGT < 2:542013/141‑1 ACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCTTTTGTATCACCATTCGGTACTGGCGTGTCATTTGTCGCCGT > 2:800999/1‑141 CATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCTTTTGTATCACCATTCGGTACTGGCGTGTCATTTGTCGCCGTT > 3:337994/1‑141 TAGTAAAATTGCGAGCCAATTAATTCCTAATAAGATAGCTAAATCAGCAAATGGTGAATTGAAGTTGATGCCATTCCATCCACTATGTTGTAACATTGATTGAGGCATAGAAGTGATAAACGTACTTTGTAAAATGATGTACAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2579633‑2579488‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacaacaTAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCTTTTGTATCACCATTCGGTACTGGCGTGTCATTTGTCGCCGTT > USA300TCH1516_ALE/2579549‑2579687 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |