BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2579488 =	145 (1.040)	3 (0.020)	3/244	NT	2.1%	coding (761/1638 nt)	yveA	Aspartate‑proton symporter
*	?	USA300TCH1516_ALE	2579549 =	142 (1.070)	3 (0.020)	3/244	NT	2.1%	coding (822/1638 nt)	yveA	Aspartate‑proton symporter
Rejected: Frequency below/above cutoff threshold.

Only 100 of 172 total aligned reads displayed.

ATTAATATGGGTTCAGAAATTAAAAATCCTGAAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCTTTTGTATCACCATTCGGTACTGGCGTGTCATTTGTCGCCGTT  >  USA300TCH1516_ALE/2579409‑2579687

  taATATGGGTTCAGAAATTAAAAATCCTGAAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAg                                                                                                                                          >  4:473433/1‑141 (MQ=255)

       tGGGTTCAGAAATTAAAAATCCTGAAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGtggat                                                                                                                                     >  2:323312/1‑141 (MQ=255)

       tGGGTTCAGAAATTAAAAATCCTGAAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGtggat                                                                                                                                     >  2:337976/1‑141 (MQ=255)

       tGGGTTCAGAAATTAAAAATCCTGAAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGtggat                                                                                                                                     <  4:38688/141‑1 (MQ=255)

          gTTCAGAAATTAAAAATCCTGAAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCATCAATCAATGTTACAACATAGtggatgga                                                                                                                                  >  2:153549/1‑141 (MQ=255)

           ttCAGAAATTAAAAATCCTGAAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGaa                                                                                                                                 <  1:829303/141‑1 (MQ=255)

           ttCAGAAATTAAAAATCCTGAAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGaa                                                                                                                                 <  1:60022/141‑1 (MQ=255)

              aGAAATTAAAAATCCTGAAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATgg                                                                                                                              <  1:827080/141‑1 (MQ=255)

              aGAAATTAAAAATCCTGAAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATgg                                                                                                                              <  1:749260/141‑1 (MQ=255)

               gAAATTAAAAATCCTGAAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGc                                                                                                                             >  2:588045/1‑141 (MQ=255)

               gAAATTAAAAATCCTGAAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGc                                                                                                                             <  3:32175/141‑1 (MQ=255)

                   ttAAAAATCCTGTAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCa                                                                                                                         <  4:405683/141‑1 (MQ=255)

                   ttAAAAATCCTGAAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCa                                                                                                                         >  2:1018780/1‑141 (MQ=255)

                    tAAAAATCCTGAAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCaa                                                                                                                        >  4:118329/1‑141 (MQ=255)

                      aaacTCCTGAAATAAATAACGCCACAGGCATCGCCATCTCACTGTCAATCAGTGCAGTGTTGTACATCATCTTACAAAGTGCGTTTATCACTTCTATGCCTCAATCAGTGTTACAACATAGTGGATGGAATGGCATCAACt                                                                                                                      <  2:105024/141‑1 (MQ=255)

                       aaaTCCTGAAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACtt                                                                                                                     >  4:318820/1‑141 (MQ=255)

                        aaTCCTGAAAAAAATATCGCAAGAGGCATCGCTATTTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTc                                                                                                                    >  2:821155/1‑141 (MQ=255)

                         aTCCTGAAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCa                                                                                                                   <  1:329265/141‑1 (MQ=255)

                          tCCTGAAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCaa                                                                                                                  <  2:38170/141‑1 (MQ=255)

                          accTGAAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCaa                                                                                                                  <  2:188068/140‑1 (MQ=255)

                            cTGAAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAAtt                                                                                                                <  2:522084/141‑1 (MQ=255)

                            cTGAAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAAtt                                                                                                                <  2:129228/141‑1 (MQ=255)

                              gAAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCa                                                                                                              <  2:112313/141‑1 (MQ=255)

                               aaaaaaaTATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCAc                                                                                                             >  4:438638/1‑141 (MQ=255)

                                aaaaaaTATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCAcc                                                                                                            >  1:522873/1‑141 (MQ=255)

                                 aaaaaTATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCa                                                                                                           >  2:5700/1‑141 (MQ=255)

                                     atatCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTg                                                                                                       <  4:407680/141‑1 (MQ=255)

                                      tatCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGc                                                                                                      >  1:864560/1‑141 (MQ=255)

                                        tCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTg                                                                                                    <  1:208536/141‑1 (MQ=255)

                                         cGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGa                                                                                                   <  3:176662/141‑1 (MQ=255)

                                         cGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGa                                                                                                   <  1:1067258/141‑1 (MQ=255)

                                              gagGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAg                                                                                              <  3:489164/141‑1 (MQ=255)

                                              gagGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAg                                                                                              >  1:259301/1‑141 (MQ=255)

                                                ggCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCt                                                                                            <  1:698966/141‑1 (MQ=255)

                                                      gCTATCTCACTGTCAATCAGTGCAGTGTTGTACACCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCtta                                                                                      <  1:495672/141‑1 (MQ=255)

                                                         aTCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCttatta                                                                                   <  2:177632/141‑1 (MQ=255)

                                                         aTCTCACNGTAAATATGTGCAGTGTTGTACATCATTATACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATCGTCTCTACTTCAATTCACCATTTGCTGATTTAGCTATCttatta                                                                                   <  2:894011/141‑1 (MQ=255)

                                                           ttcAGTGTTAATCATAGCAGTGTTGTAAATATTTTTAGAATGTATGTTTATCAATTCTATGGCTCGAACAAAGTTAACACATAGTGGATGTAATGGCATTAAATTGAATCCACCATTTGCTGTTTTAGCTATCTTATTAgg                                                                                 <  4:106433/140‑1 (MQ=255)

                                                           ctcACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAgg                                                                                 <  2:81406/141‑1 (MQ=255)

                                                            tcACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCACTTAATGTTACAAAATATTGTATTGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGa                                                                                >  1:297742/1‑141 (MQ=255)

                                                            tcACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGa                                                                                >  3:119644/1‑141 (MQ=255)

                                                               cTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGaatt                                                                             <  2:396231/141‑1 (MQ=255)

                                                                tGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGaatta                                                                            <  1:269595/141‑1 (MQ=255)

                                                                    aaTCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTg                                                                        >  4:158127/1‑141 (MQ=255)

                                                                      tCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCCCTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGc                                                                      <  3:300073/141‑1 (MQ=255)

                                                                      tCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCaa                                                                                                                  <  2:85070/97‑1 (MQ=255)

                                                                      tCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCaa                                                                                                                  >  1:85070/1‑97 (MQ=255)

                                                                      tCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGc                                                                      <  3:379178/141‑1 (MQ=255)

                                                                        agtgcagtgTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTc                                                                    <  2:419191/141‑1 (MQ=255)

                                                                        agtgcagtgTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTc                                                                    <  1:1110319/141‑1 (MQ=255)

                                                                         gtgcagtgTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCg                                                                   <  1:816757/141‑1 (MQ=255)

                                                                            cagtgTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCaa                                                                <  3:448897/141‑1 (MQ=255)

                                                                             agtgTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAAt                                                               >  2:381281/1‑141 (MQ=255)

                                                                              gtgtTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAAtt                                                              <  1:959986/141‑1 (MQ=255)

                                                                              gtgtTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAAtt                                                              >  3:480190/1‑141 (MQ=255)

                                                                                GTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAAtttt                                                            >  2:508951‑M1/1‑141 (MQ=255)

                                                                                 ttgtaacattgattgaggcatagaagtgataaacgtactttgtaaaatgatgtacaacaTAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGaat                                                                              >  2:70949‑M2/60‑122 (MQ=255)

                                                                                    TACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACta                                                        >  1:767319‑M1/1‑141 (MQ=255)

                                                                                      catcatTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACtata                                                      <  4:239270/141‑1 (MQ=255)

                                                                                         catTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACAt                                                   <  2:959007/141‑1 (MQ=255)

                                                                                          atTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACAtt                                                  >  2:1179544/1‑141 (MQ=255)

                                                                                           ttttACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTg                                                 <  1:253459/141‑1 (MQ=255)

                                                                                            tttACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGa                                                <  2:30804/141‑1 (MQ=255)

                                                                                            tttACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGa                                                <  2:781031/141‑1 (MQ=255)

                                                                                            tttACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGa                                                >  2:831564/1‑141 (MQ=255)

                                                                                              tACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAg                                              >  1:574940/1‑141 (MQ=255)

                                                                                                cAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCt                                            <  1:5700/141‑1 (MQ=255)

                                                                                                cAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCt                                            <  1:1049407/141‑1 (MQ=255)

                                                                                                cAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCt                                            <  1:907804/141‑1 (MQ=255)

                                                                                                cAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCt                                            <  1:911506/141‑1 (MQ=255)

                                                                                                cAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCt                                            >  1:150380/1‑141 (MQ=255)

                                                                                                cAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCt                                            <  2:328707/141‑1 (MQ=255)

                                                                                                 aaaGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCtt                                           <  1:545904/141‑1 (MQ=255)

                                                                                                   aGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCtttt                                         >  2:671819/1‑141 (MQ=255)

                                                                                                    gTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCTTTTg                                        >  3:43667/1‑141 (MQ=255)

                                                                                                          ttATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCTTTTGTATCAc                                  <  3:292591/141‑1 (MQ=255)

                                                                                                            aTCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCTTTTGTATCACCa                                <  2:255137/141‑1 (MQ=255)

                                                                                                            aTCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCTTTTGTATCACCa                                >  3:69773/1‑141 (MQ=255)

                                                                                                             tCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCTCCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCTTTTGTATCACCAt                               <  1:463759/141‑1 (MQ=255)

                                                                                                               aCTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCTTTTGTATCACCATTc                             <  1:688301/141‑1 (MQ=255)

                                                                                                               aCTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCTTTTGTATCACCATTc                             <  1:1118953/141‑1 (MQ=255)

                                                                                                               aCTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCTTTTGTATCACCATTc                             <  1:51423/141‑1 (MQ=255)

                                                                                                                 ttCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCTTTTGTATCACCATTCgg                           <  3:415763/141‑1 (MQ=255)

                                                                                                                 ttCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCTTTTGTATCACCATTCgg                           <  4:166514/141‑1 (MQ=255)

                                                                                                                   cTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCTTTTGTATCACCATTCGGTa                         <  1:1029037/141‑1 (MQ=255)

                                                                                                                     aTGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCTTTTGTATCACCATTCGGTACt                       <  3:125688/141‑1 (MQ=255)

                                                                                                                     aTGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCTTTTGTATCACCATTCGGTACt                       <  4:123672/141‑1 (MQ=255)

                                                                                                                     aTGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCTTTTGTATCACCATTCGGTACt                       >  1:395004/1‑141 (MQ=255)

                                                                                                                      tGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCTTTTGTATCACCATTCGGTACTg                      <  1:745107/141‑1 (MQ=255)

                                                                                                                        ccTCAATCAATGTTACAGCATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCTTTTGTATCACCATTCGGTACTGGc                    <  2:809723/141‑1 (MQ=255)

                                                                                                                        ccTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCTTTTGTATCACCATTCGGTACTGGc                    >  2:377026/1‑141 (MQ=255)

                                                                                                                         cTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCTTTTGTATCACCATTCGGTACTGGCg                   >  3:406363/1‑141 (MQ=255)

                                                                                                                         cTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCTTTTGTATCACCATTCGGTACTGGCg                   <  1:917931/141‑1 (MQ=255)

                                                                                                                          tcaatcaaTGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGCAGCTTCTGTATCACCATTCGGTACTGGCgt                  <  2:654604/141‑1 (MQ=255)

                                                                                                                           ccatcaatGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCCTTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCTTTTGTATCACCATTCGGTACTGGCgtg                 <  2:806929/139‑1 (MQ=255)

                                                                                                                                  tGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTGAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCTTTTGTATCACCATTCGGTACTGGCGTGTCAtttt          >  2:632520/1‑140 (MQ=255)

                                                                                                                                   gTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCTTTTGTATCACCATTCGGTACTGGCGTGTCATTTGt         >  1:80995/1‑141 (MQ=255)

                                                                                                                                     tacaacaTAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCTTTTGTATCACCATTCGGTACTGGCGTGTCATTTGTCg       <  4:141105‑M2/134‑1 (MQ=255)

                                                                                                                                       caacaTAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCTTTTGTATCACCATTCGGTACTGGCGTGTCATTTGTCGcc     >  2:697810‑M2/6‑141 (MQ=255)

                                                                                                                                        aacaTAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCTTTTGTATCACCATTCGGTACTGGCGTGTCATTTGTCGCCg    >  4:225743‑M2/5‑141 (MQ=255)

ATTAATATGGGTTCAGAAATTAAAAATCCTGAAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTTTACTATACATTGAAGCTTTTGTATCACCATTCGGTACTGGCGTGTCATTTGTCGCCGTT  >  USA300TCH1516_ALE/2579409‑2579687

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.