New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2579488 =145 (1.040)3 (0.020) 3/244 NT 2.1% coding (761/1638 nt) yveA Aspartate‑proton symporter
?USA300TCH1516_ALE 2579549 = 142 (1.070)coding (822/1638 nt) yveA Aspartate‑proton symporter
Rejected: Frequency below/above cutoff threshold.

Only 100 of 167 total aligned reads displayed.

GATTTTTGCTGCAACAACAGCATCAGGGATTATTTTTTCATTCAATTCATTCCAGACAATTATTAATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTT  >  USA300TCH1516_ALE/2579348‑2579628
                                                                                                                                             |                                                                                                                                            
gATTTTTGCTGCAACAACAGCATCAGGGATTATTTTTTCATTCAATTCATTCCAGACAATTATTAATATGGGTTCAGGAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATcagtgcagt                                                                                                                                              >  1:320830/1‑141 (MQ=255)
   acggcgacaaatgacacgccagtaccgaatggtgatacaaaagcttcaatgtatagtaaaattgcgagccaattaattcctaataagatagctaaatcagcaaatggtgaattgaagttgatgccattccatccactatgt                                                                                                                                            <  2:542013‑M1/3‑1 (MQ=255)
   acggcgacaaatgacacgccagtaccgaatggtgatacaaaagcttcaatgtatagtaaaattgcgagccaattaattcctaataagatagctaaatcagcaaatggtgaattgaagttgatgccattccatccactatgt                                                                                                                                            >  2:1112916‑M1/139‑141 (MQ=255)
    cggcgacaaatgacacgccagtaccgaatggtgatacaaaagcttcaatgtatagtaaaattgcgagccaattaattcctaataagatagctaaatcagcaaatggtgaattgaagttgatgccattccatccactatgtt                                                                                                                                           >  4:225743‑M1/138‑141 (MQ=255)
     ttGCTGCAACAACAGCATCAGGGATTATTTTTTCATTCAATTCATTCCAGACAATTATTAATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGtgttgt                                                                                                                                         >  2:1049407/1‑141 (MQ=255)
      tgctgcAACAACAGCATCAGGGATTATTTTTTCTTTCAATTCATTCCAGACAATTATTAATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGCGCAGTCTTGTa                                                                                                                                        >  4:292591/1‑141 (MQ=255)
      tgctgcAACAACAGCATCAGGGATTATTTTTTCATTCAATTCATTCCAGACAATTATTAATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTa                                                                                                                                        >  1:986743/1‑141 (MQ=255)
      tgctgcAACAACAGCATCAGGGATTATTTTTTCATTCAATTCATTCCAGACAATTATTAATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTa                                                                                                                                        <  3:150057/141‑1 (MQ=255)
      gcgacaaatgacacgccagtaccgaatggtgatacaaaagcttcaatgtatagtaaaattgcgagccaattaattcctaataagatagctaaatcagcaaatggtgaattgaagttgatgccattccatccactatgttgt                                                                                                                                         >  2:577736‑M1/136‑141 (MQ=255)
       gctgcAACAACAGCATCAGGGATTATTTTTTCATTCAATTCATTCCAGACAATTATTAATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTAc                                                                                                                                       <  3:294067/141‑1 (MQ=255)
       cgacaaatgacacgccagtaccgaatggtgatacaaaagcttcaatgtatagtaaaattgcgagccaattaattcctaataagatagctaaatcagcaaatggtgaattgaagttgatgccattccatccactaTGTTGTa                                                                                                                                        <  4:141105‑M1/7‑1 (MQ=255)
        ttttttcaacaGCATCAGGGATTATTTTTTCATTCAATTCATTCCAGACAATTATTAATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCTCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTAca                                                                                                                                      >  2:329265/7‑141 (MQ=255)
         tgcAACAACAGCATCAGGGATTATTTTTTCATTCAATTCATTCCAGACAATTATTAATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCCAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTAcat                                                                                                                                     <  4:350381/141‑1 (MQ=255)
               aacaGCATCAGGGATTATTTTTTCATTCAATTCATTCCAGACAATTATTAATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCAtttt                                                                                                                               <  4:200351/141‑1 (MQ=255)
                 caGCATCAGGGATTATTTTTTCATTCAATTCATTCCAGACAATTATTAATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTAc                                                                                                                             >  2:60022/1‑141 (MQ=255)
                 caGCATCAGGGATTATTTTTTCATTCAATTCATTCCAGACAATTATTAATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTAc                                                                                                                             <  3:55231/141‑1 (MQ=255)
                   gCATCAGGGATTATTTTTTCATTCAATTCATTCCAGACAATTATTAATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTTTCATGCAGTGCAGTGTTGTACATCATTTTACaa                                                                                                                           <  1:334154/141‑1 (MQ=255)
                   gCATCAGGGATTATTTTTTCATTCAATTCATTCCAGACAATTATTAATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACaa                                                                                                                           <  1:447163/141‑1 (MQ=255)
                    cATCAGGGATTATTTTTTTTTTTTTTTTTTTCCAGACAATGATTAATATGGGTTCATAAATTAAAAATCCTG‑AAAAAAATATCGCAAGTGGCATCGCTATCCCACTGTCAATCAGTGCATTTTTTTACTTCTTTTTACaaa                                                                                                                          >  2:1019783/1‑141 (MQ=255)
                    cATCAGGGATTATTTTTTCATTCAATTCATCCCAGACAATTATTACTATGGGCTCAGTAATTAAAAACCCTG‑AAAAAAATATCGCAATAGGCATCTCTATCTCACTGTCAATCAGTGCCGGGTTGTACACCATTTTACaaa                                                                                                                          >  1:952606/1‑141 (MQ=255)
                      tCAGGGATTATTTTTTCATTCAATTCATTCCAGACAATTATTAATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGt                                                                                                                        <  3:317690/141‑1 (MQ=255)
                       cAGGGATTATTTTTTCATTCAATTCATTCCAGACAATTATTAATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTa                                                                                                                       >  1:806929/1‑141 (MQ=255)
                       cAGGGATTATTTTTTCATTCAATTCATTCCAGACAATTATTAATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTa                                                                                                                       >  2:269569/1‑141 (MQ=255)
                              tattTTTTCATTCAATTCATTCCAGACAATTATTAATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTAt                                                                                                                <  1:910228/141‑1 (MQ=255)
                              tattTTTTCATTCAATTCATTCCAGACAATTATTAATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTAt                                                                                                                <  1:742727/141‑1 (MQ=255)
                                ttttttCATTCAATTCATTCCAGACAATTATTAATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCa                                                                                                              <  4:200666/141‑1 (MQ=255)
                                ttttttCATTCAATTCATTCCAGACAATTATTAATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCa                                                                                                              <  3:20523/141‑1 (MQ=255)
                                 tttttCATTCAATTCATTCCAGACAATTATTAATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCAc                                                                                                             >  4:55840/1‑141 (MQ=255)
                                  ttttCATTCAATTATTTCGAGATTTGTAATAGTAAATGTTCAGATATTAATATTCTTT‑AAGAAAAGATCTCAATAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACt                                                                                                            <  1:541368/141‑1 (MQ=255)
                                     tcattcaATTCATTCCAGACAATTATTAATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCt                                                                                                         <  3:335473/141‑1 (MQ=255)
                                     tcattcaATTCATTCCAGACAATTATTAATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCt                                                                                                         >  1:275464/1‑141 (MQ=255)
                                       attcaattcaTTCCAGACAATTATTAATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTAt                                                                                                       <  1:641190/141‑1 (MQ=255)
                                        ttcaattcaTTCCAGACAATTATTAATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATg                                                                                                      >  1:38170/1‑141 (MQ=255)
                                          caattcaTTCCAGACAATTATTAATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGcc                                                                                                    <  3:116759/141‑1 (MQ=255)
                                            attcattcCAGACAATTATTAATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCtc                                                                                                  >  1:177632/1‑141 (MQ=255)
                                              tcattcCAGACAATTATTAATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCtcaa                                                                                                <  2:736742/141‑1 (MQ=255)
                                               cattcCAGACAATTATTAATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCtcaat                                                                                               <  2:220181/141‑1 (MQ=255)
                                                 ttcCAGACAATTATTAATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCtcaatca                                                                                             >  4:125688/1‑141 (MQ=255)
                                                 ttcCAGACAATTATTAATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCtcaatca                                                                                             >  1:17714/1‑141 (MQ=255)
                                                 ttcCAGACAATTATTAATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGGTTATCACTTCTATGCCtcaatca                                                                                             >  3:106764/1‑141 (MQ=255)
                                                      gACAATTATTAATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGtt                                                                                        >  3:395971/1‑141 (MQ=255)
                                                       aCAATTATTAATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTa                                                                                       <  1:387060/141‑1 (MQ=255)
                                                          attattAATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTacaa                                                                                    <  2:781042/141‑1 (MQ=255)
                                                           ttattaATATGAGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTacaac                                                                                   <  2:450828/141‑1 (MQ=255)
                                                           ttattaAGATGGGTGCAGAAATCAAAAATCCGG‑AAAAGAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGATGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTacaac                                                                                   >  4:16713/1‑141 (MQ=255)
                                                            aaaattgcgagccaattaattcctaataagatagctaaatcagcaaatggtgaattgaagttgatgccattccatccactaTGTTGTACATCATTTTACAAAGCACGTTTATCACTTCTATGCCTCAATCAATGTTacaac                                                                                   >  1:861456‑M1/82‑141 (MQ=255)
                                                             attaATATGGGTTCAGAAATTAAAAATCCTGAAAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTaaaaca                                                                                  >  1:492362/1‑141 (MQ=255)
                                                              ttaATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATTTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATa                                                                                >  3:484014/1‑141 (MQ=255)
                                                              ttaATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATa                                                                                <  4:302604/141‑1 (MQ=255)
                                                               taATATGGTTTTAGAAAAAAAAAATTCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAACGTTACAACATAg                                                                               <  2:812192/141‑1 (MQ=255)
                                                               taATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAg                                                                               <  2:314222/141‑1 (MQ=255)
                                                               taATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAg                                                                               >  4:473433/1‑141 (MQ=255)
                                                                       gTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCATCAATCAATGTTACAACATAGtggatgga                                                                       >  2:153549/1‑141 (MQ=255)
                                                                        ttCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGaa                                                                      <  1:916467/141‑1 (MQ=255)
                                                                        ttCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGaa                                                                      <  1:829303/141‑1 (MQ=255)
                                                                           aGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATgg                                                                   <  1:749260/141‑1 (MQ=255)
                                                                            gAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGc                                                                  <  3:32175/141‑1 (MQ=255)
                                                                              attcctaataagatagctaaatcagcaaatggtgaattgaagttgatgccattccatccactaTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTacaa                                                                                    >  2:70949‑M1/64‑122 (MQ=255)
                                                                                ttAAAAATCCTG‑TAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCa                                                              <  4:405683/141‑1 (MQ=255)
                                                                                   aaacTCCTG‑AAATAAATAACGCCACAGGCATCGCCATCTCACTGTCAATCAGTGCAGTGTTGTACATCATCTTACAAAGTGCGTTTATCACTTCTATGCCTCAATCAGTGTTACAACATAGTGGATGGAATGGCATCAACt                                                           <  2:105024/141‑1 (MQ=255)
                                                                                     aaTCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATTTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTc                                                         >  2:821155/1‑141 (MQ=255)
                                                                                      aTCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCa                                                        <  1:329265/141‑1 (MQ=255)
                                                                                       tCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCaa                                                       <  2:38170/141‑1 (MQ=255)
                                                                                       accTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCaa                                                       <  2:188068/140‑1 (MQ=255)
                                                                                         cTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAAtt                                                     <  2:522084/141‑1 (MQ=255)
                                                                                         cTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAAtt                                                     <  2:129228/141‑1 (MQ=255)
                                                                                             aaaaaaaTATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCAc                                                  >  4:438638/1‑141 (MQ=255)
                                                                                              aaaaaaTATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCAcc                                                 >  1:522873/1‑141 (MQ=255)
                                                                                              aaaaaaTATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCAcc                                                 <  4:413136/141‑1 (MQ=255)
                                                                                               aaaaaTATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCa                                                >  2:5700/1‑141 (MQ=255)
                                                                                                     atCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCt                                          >  4:448897/1‑141 (MQ=255)
                                                                                                      tCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTg                                         >  1:572420/1‑141 (MQ=255)
                                                                                                      tCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTg                                         <  1:208536/141‑1 (MQ=255)
                                                                                                       cGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGa                                        <  1:1067258/141‑1 (MQ=255)
                                                                                                       cGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGa                                        <  3:176662/141‑1 (MQ=255)
                                                                                                       cGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGa                                        <  1:1060375/141‑1 (MQ=255)
                                                                                                            gagGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAg                                   >  1:259301/1‑141 (MQ=255)
                                                                                                             agGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATACACCATTTGCTGATTTAGc                                  <  2:650135/141‑1 (MQ=255)
                                                                                                              ggCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCt                                 <  1:698966/141‑1 (MQ=255)
                                                                                                                  tCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCt                             <  2:336940/141‑1 (MQ=255)
                                                                                                                    gCTATCTCACTGTCAATCAGTGCAGTGTTGTACACCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCtta                           <  1:495672/141‑1 (MQ=255)
                                                                                                                         ttcAGTGTTAATCATAGCAGTGTTGTAAATATTTTTAGAATGTATGTTTATCAATTCTATGGCTCGAACAAAGTTAACACATAGTGGATGTAATGGCATTAAATTGAATCCACCATTTGCTGTTTTAGCTATCTTATTAgg                      <  4:106433/140‑1 (MQ=255)
                                                                                                                          tcACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGa                     >  3:119644/1‑141 (MQ=255)
                                                                                                                             cTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGaatt                  <  2:396231/141‑1 (MQ=255)
                                                                                                                              tGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGaatta                 <  1:269569/141‑1 (MQ=255)
                                                                                                                                  aaTCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTg             >  3:411105/1‑141 (MQ=255)
                                                                                                                                  aaTCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTg             >  4:158127/1‑141 (MQ=255)
                                                                                                                                    tCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCaa                                                       <  2:85070/97‑1 (MQ=255)
                                                                                                                                    tCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGc           <  3:379178/141‑1 (MQ=255)
                                                                                                                                      agtgcagtgTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATTAATGTTACAACATAGTGGATGGAATGGCATCAATTTCAATTCACCATTTGCTGATTTAGCTATCTTATTTGGAATTAATTGGCTc         <  4:403671/141‑1 (MQ=255)
                                                                                                                                      agtgcagtgTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTc         <  2:419191/141‑1 (MQ=255)
                                                                                                                                      agtgcagtgTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTc         <  1:1110319/141‑1 (MQ=255)
                                                                                                                                       gtgcagtgTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCg        <  1:816757/141‑1 (MQ=255)
                                                                                                                                         gcagtgTTGTGCATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCa      >  1:837061/1‑141 (MQ=255)
                                                                                                                                         gcagtgTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCa      <  3:501339/141‑1 (MQ=255)
                                                                                                                                          cagtgTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCaa     <  2:369595/141‑1 (MQ=255)
                                                                                                                                           agtgTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAAt    >  1:583845/1‑141 (MQ=255)
                                                                                                                                           agtgTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAAt    >  2:381281/1‑141 (MQ=255)
                                                                                                                                            gtgtTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAAtt   <  1:959986/141‑1 (MQ=255)
                                                                                                                                            gtgtTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAAtt   >  3:480190/1‑141 (MQ=255)
                                                                                                                                             |                                                                                                                                            
GATTTTTGCTGCAACAACAGCATCAGGGATTATTTTTTCATTCAATTCATTCCAGACAATTATTAATATGGGTTCAGAAATTAAAAATCCTG‑AAAAAAATATCGCAAGAGGCATCGCTATCTCACTGTCAATCAGTGCAGTGTTGTACATCATTTTACAAAGTACGTTTATCACTTCTATGCCTCAATCAATGTTACAACATAGTGGATGGAATGGCATCAACTTCAATTCACCATTTGCTGATTTAGCTATCTTATTAGGAATTAATTGGCTCGCAATTT  >  USA300TCH1516_ALE/2579348‑2579628

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.