| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2670076 | 147 (1.050) | 3 (0.020) | 3/234 | NT | 2.2% | intergenic (+13/+69) | yicL/lipR | putative inner membrane transporter YicL/Putative acetyl‑hydrolase LipR |
| ? | USA300TCH1516_ALE | = 2670127 | 139 (1.100) | intergenic (+64/+18) | yicL/lipR | putative inner membrane transporter YicL/Putative acetyl‑hydrolase LipR | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACCTGTCGTAGCCGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2669925‑2670076‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaactctgataTCACCTATAAGGTAACTACGTTGTT‑AAATAATAGTTACTTGCTAAAGTGATTATCAGAGTTTTCTTATTCATCTAATGTTTCAGGTTGTCTTTTAAGTGATAGTAATAAAATTAAAATCATAATAAGAATGATGCCTACG < USA300TCH1516_ALE/2670127‑2669988 ACCTGTCGTAGCCGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGA < 2:849272/141‑1ACCTGTCGTAGCCGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGA < 2:270229/141‑1 GTCGTAGCCGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAAC < 2:640765/141‑1 GTCGTAGCCGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAAC < 3:300748/141‑1 TCGTAGCCGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACT > 1:72700/1‑141 TCGTAGCCGTTATCGCAAGCAGTCTATGGTTAAATGTGGCATTCAAACCATTTCAAATCGTAGGCAGCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATAAGATGAATAAGAAAACT > 1:407595/1‑141 CGTAGCTGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTC < 2:106625/141‑1 CGTAGCCGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTC < 2:151941/141‑1 CGTAGCCGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAAGCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTC < 1:294389/141‑1 GTAGCCGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCT > 1:577813/1‑141 TAGCCGTTATCGCAAGCAGTCTATGGTTACATGTTGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTG < 2:990903/141‑1 TAGCCGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGCAACATTAGATGAATAAGAAAACTATG > 4:433681/1‑141 TAGCCGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTG > 1:175969/1‑141 TAGCCGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTG < 3:230727/141‑1 TAGCCGTTATCGCAAGCAGTCTATGGGTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTG < 2:909557/141‑1 AGCCGTTATCGCAAGCAGTCTATGGTTACATGTGGCATGCAAACCATTTCAAATCGTAGGCATCATTCGTATTATGATGATAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGA > 1:174958/1‑141 GCCGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGAT > 2:214549/1‑141 GCCGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGAT > 2:64718/1‑141 CCGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATA > 2:182049/1‑141 CCGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATA < 1:377853/141‑1 CCGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATA > 2:654/1‑141 CCGTTAGCGCAATCAGTCTATTGTTACATGCTGCATTCAAACCATTTCAAATCTTATGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATA < 1:1133889/141‑1 TAGGCATCATTCTTAGTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATATCACCTATAAGGTAACTACGTTGTT‑AAATAATAGTTACTTGCTAAAGTGATTAT < 1:811520/141‑1 CATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATATCACCTATAAGGTAACTACGTTGTT‑AAATAATAGTTACTTGCTAAAGTGATTATCAGAGTT < 2:259606/141‑1 TTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATATCACCTATAAGGTAACTACGTTGTT‑AAATAATAGTTACTTGCTAAAGTGATTATCAGAGTTTT < 2:812597/141‑1 AAAACTCTGATATCACCTATAAGGTAACTACGTTGTT‑AAATAATAGTTACTTGCTAAAGTGATTATCAGAGTTTTCTTATTCATCTAATGTTTCAGGTTGTCTTTTAAGTGATAGTAATAAAATTAAAATCATAATAAGAA < 4:358103/141‑1 AAACTCTGATATCACCTATAAGGTCACTACGTTGTT‑AAATAATAGTTACTTGCTAAAGTGATTATCAGAGTTTTCTTATTTATCTAATGTTTCAGGTTGTCATTTAAGTGATAGTAATAAAATTAAAATCATAATTAGAAT > 2:1004866/1‑141 AAACTCTGATATCACCTATAAGGTAACTACGTTGTT‑AAATAATAGTTACTTGCTAAAGTGATTATCAGAGTTTTCTTATTCATCTAATGTTTCAGGTTGTCTTTTAAGTGATAGTAATAAAATTAAAATCATAATAAGAAT > 1:802409/1‑141 AAACTCTGATATCACCTATAAGGTAACTAAGTTGTTAAAATAATAGTTACTTGCTAAAGTAATTATCAGAGTTTTCTTATTCATCTAATGTTTCAGGTTGTCTTTTAAGTGATAGTAATAAAATTAAAATCATAATAAGAA > 4:482076/1‑141 ACTCTGATATCACCTATAAGGTAACTACGTTGTT‑AAATAATAGTTACTTGCTAAAGTGATTATCAGAGTTTTCTTATTCATCTAATGTTTCAGGTTGTCTTTTAAGTGATAGTAATAAAATTAAAATCATAATAAGAATGA > 3:431308/1‑141 CTGATATCACCTATAAGGTAACTACGTTGTT‑AAATAATAGTTACTTGCTAAAGTGATTATCAGAGTTTTCTTATTCATCTAATGTTTCAGGTTGTCTTTTAAGTGATAGTAATAAAATTAAAATCATAATAAGAATGATGC > 2:763270/1‑141 CTGATATCACCTATAAGGTAACTACGTTGTT‑AAATAATAGTTACTTGCTAAAGTGATTATCAGAGTTTTCTTATTCATCTAATGTTTCAGGTTGTCTTTTAAGTGATAGTAATAAAATTAAAATCATAATAAGAATGATGC > 3:139203/1‑141 TGATATCACCTATAAGGTAACTACGTTGTT‑AAATAATAGTTACTTGCTAAAGTGATTATCAGAGTTTTCTTATTCATCTAATGTTTCAGGTTGTCTTTTAAGTGATAGTAATAAAATTAAAATCATAATAAGAATGATGCC > 4:371905/1‑141 TGATATCACCTATAAGGTAACTACGTTGTT‑AAATAATAGTTACTTGCTAAAGTGATTATCAGAGTTTTCTTATTCATCTAATGTTTCAGGTTGTCTTTTAAGTGATAGTAATAAAATTAAAATCATAATAAGAATGATGCC > 1:558564/1‑141 ATATCACCTATAAGGTAACTACGTTGTT‑AAATAATAGTTACTTGCTAAAGTGATTATCAGAGTTTTCTTATTCATCTAATGTTTCAGGTTGTCTTTTAAGTGATAGTAATAAAATTAAAATCATAATAAGAATGATGCCTA < 2:526648/141‑1 ATATCACCTATAAGGTAACTACGTTGTT‑AAATAATAGTTACTTGCTAAAGTGATTATCAGAGTTTTCTTATTCATCTAATGTTTCAGGTTGTCTTTTAAGTGATAGTAATAAAATTAAAATCATAATAAGAATGATGCCTA > 4:389983/1‑141 ATATCACCTATAAGGTAACTACGTTGTT‑AAATAATAGTTACTTGCTAAAGTGATTATCAGAGTTTTCTTATTCATCTAATGTTTCAGGTTGTCTTTTAAGTGATAGTAATAAAATTAAA > 2:301743/1‑119 ATATCACCTATAAGGTAACTACGTTGTT‑AAATAATAGTTACTTGCTAAAGTGATTATCAGAGTTTTCTTATTCATCTAATGTTTCAGGTTGTCTTTTAAGTGATAGTAATAAAATTAAA < 1:301743/119‑1 TATCACCTATAAGGTAACTACGTTGTT‑AAATAATAGTTACTTGCTAAAGTGATTATCAGAGTTTTCTTATTCATCTAATGTTTCAGGTTGTCTTTTAAGTGATAGTAATAAAATTAAAATCATAATAAGAATGATGCCTAC < 2:923715/141‑1 TATCACCTATAAGGTAACTACGTTGTT‑AAATAATAGTTACTTGCTAAAGTGATTATCAGAGTTTTCTTATTCATCTAATGTTTCAGGTTGTCTTTTAAGTGATAGTAATAAAATTAAAATCATAATAAGAATGATGCCTAC < 3:419292/141‑1 TATCACCTATAAGGTAACTACGTTGTT‑AAATAATAGTTACTTGCTAAAGTGATTATCAGAGTTTTCTTATTCATCTAATGTTTCAGGTTGTCTTTTAAGTGATAGTAATAAAATTAAAATCATAATAAGAATGATGCCTAC < 4:354832/141‑1 ATCACCTATAAGGTAACTACGTTGTT‑AAATAATAGTTACTTGCTAAAGTGATTATCAGAGTTTTCTTATTCATCTAATGTTTCAGGTTGTCTTTTAAGTTATAGTAATAAAATTAAAATCATAATAAGAATGATGCCTACG > 1:698160/1‑141 ATCACCTATAAGGTAACAACATTGTT‑AAATAATAGTTACTTGCTAAAGTGATTATCAGAGTTTTCTTATTCATCTAATGTTTCAGGTTGTCTTTTAAGTGATAGTAATAAAATTAAAATCATAATAAGAATGATGCCTACG > 3:115781/1‑141 ACCTGTCGTAGCCGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2669925‑2670076‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaactctgataTCACCTATAAGGTAACTACGTTGTT‑AAATAATAGTTACTTGCTAAAGTGATTATCAGAGTTTTCTTATTCATCTAATGTTTCAGGTTGTCTTTTAAGTGATAGTAATAAAATTAAAATCATAATAAGAATGATGCCTACG < USA300TCH1516_ALE/2670127‑2669988 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |