New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 2670076147 (1.050)3 (0.020) 3/234 NT 2.2% intergenic (+13/+69) yicL/lipR putative inner membrane transporter YicL/Putative acetyl‑hydrolase LipR
?USA300TCH1516_ALE = 2670127 139 (1.100)intergenic (+64/+18) yicL/lipR putative inner membrane transporter YicL/Putative acetyl‑hydrolase LipR
Rejected: Frequency below/above cutoff threshold.

Only 100 of 209 total aligned reads displayed.

CCGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTTAATAATATTTTTCACTTGGTATAAAAAGCGTCGTCGCTCTGGTATCGGAAATACTGGATAAATATG  >  USA300TCH1516_ALE/2669936‑2670216
                                                                                                                                            |                                                                                                                                            
ccGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATA                                                                                                                                              >  2:182049‑M1/1‑141 (MQ=255)
ccGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATA                                                                                                                                              >  2:654‑M1/1‑141 (MQ=255)
 cGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACATGAAACATTAGATGAATAAGAAAACTCTGATaa                                                                                                                                             >  1:1141574/1‑141 (MQ=255)
           aGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGc                                                                                                                                   >  2:667226/1‑141 (MQ=255)
             cAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAATCATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCaa                                                                                                                                 <  2:1072991/141‑1 (MQ=255)
                 cTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTaa                                                                                                                             <  4:169638/141‑1 (MQ=255)
                 cTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTaa                                                                                                                             <  2:1160243/141‑1 (MQ=255)
                     ggTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACtat                                                                                                                         <  1:388071/141‑1 (MQ=255)
                     ggTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACtat                                                                                                                         >  1:598310/1‑141 (MQ=255)
                         aCATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCCCTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACCTTAGCAAGTAACTattatt                                                                                                                     >  4:396014/1‑141 (MQ=255)
                         aCATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTattatt                                                                                                                     >  4:3087/1‑141 (MQ=255)
                            tgtgGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTaa                                                                                                                  <  2:509618/141‑1 (MQ=255)
                              tgGCATTCATACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTaaca                                                                                                                >  1:1051869/1‑141 (MQ=255)
                              tgGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTaaca                                                                                                                >  2:915956/1‑141 (MQ=255)
                                gCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTaacaac                                                                                                              >  2:451812/1‑141 (MQ=255)
                                   ttCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTa                                                                                                           <  3:146397/141‑1 (MQ=255)
                                    tCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAg                                                                                                          >  1:810049/1‑141 (MQ=255)
                                    tCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAg                                                                                                          >  1:505300/1‑141 (MQ=255)
                                       aaCCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTa                                                                                                       >  1:422247/1‑141 (MQ=255)
                                        aCCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTAc                                                                                                      >  1:295910/1‑141 (MQ=255)
                                         ccATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTAcc                                                                                                     >  2:434726/1‑141 (MQ=255)
                                         ccATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTAcc                                                                                                     >  1:682390/1‑141 (MQ=255)
                                         ccATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTAcc                                                                                                     <  1:284447/141‑1 (MQ=255)
                                            tttCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTta                                                                                                  >  1:774208/1‑141 (MQ=255)
                                              tCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTtata                                                                                                <  2:21116/141‑1 (MQ=255)
                                               cAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAg                                                                                               >  2:178739/1‑141 (MQ=255)
                                                aaaTCGTAGTCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAgg                                                                                              >  1:1047354/1‑141 (MQ=255)
                                                aaaTCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAgg                                                                                              >  3:437532/1‑141 (MQ=255)
                                                aaaTCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAga                                                                                              >  4:378167/1‑140 (MQ=255)
                                                 aaTCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGt                                                                                             >  4:297436/1‑141 (MQ=255)
                                                    cGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAATGTTGTTACCTTATAGGTGAt                                                                                          >  3:115781‑M2/1‑140 (MQ=255)
                                                    cGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATAACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGAt                                                                                          >  1:698160‑M2/1‑140 (MQ=255)
                                                     gTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGAta                                                                                         <  3:419292‑M2/141‑3 (MQ=255)
                                                     gTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGAta                                                                                         <  2:923715‑M2/141‑3 (MQ=255)
                                                         gCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGAtatcag                                                                                     >  2:763270‑M2/1‑135 (MQ=255)
                                                              atTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGAtatcagagttt                                                                                >  1:802409‑M2/1‑130 (MQ=255)
                                                               ttCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAtcacctataaggtaactacgttgttaaataatagttacttgctaaagtgattatcagagtttt                                                                               <  2:812597‑M1/141‑64 (MQ=255)
                                                                tCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGttttt                                                                              <  1:939885/141‑1 (MQ=255)
                                                                tCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGttttt                                                                              <  3:247250/141‑1 (MQ=255)
                                                                 cTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGtttttt                                                                             <  1:1114517/141‑1 (MQ=255)
                                                                   tattatGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTttttat                                                                           >  2:206106/1‑141 (MQ=255)
                                                                    attatGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTttttatt                                                                          >  2:552979/1‑141 (MQ=255)
                                                                    attatGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTttttatt                                                                          >  2:517886/1‑141 (MQ=255)
                                                                     ttatGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTttttattt                                                                         <  4:209916/141‑1 (MQ=255)
                                                                          attttaattttaTTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGtt                                                                    <  1:630211/141‑1 (MQ=255)
                                                                           ttttaattttaTTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTta                                                                   <  4:339126/141‑1 (MQ=255)
                                                                            tttaattttaTTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGAtat                                                                                        >  2:301743‑M2/1‑116 (MQ=255)
                                                                            tttaattttaTTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGAtat                                                                                        <  1:301743‑M2/119‑4 (MQ=255)
                                                                             ttaattttaTTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTtaat                                                                 >  2:230288/1‑141 (MQ=255)
                                                                             ttaattttaTTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTtaat                                                                 <  1:370890/141‑1 (MQ=255)
                                                                             ttaattttaTTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTtaat                                                                 >  2:885364/1‑141 (MQ=255)
                                                                               aattttaTTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTtaataa                                                               >  1:1128568/1‑141 (MQ=255)
                                                                                   ttattaCTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTTAATAATAtt                                                           >  3:34578/1‑141 (MQ=255)
                                                                                    tattaCTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTTAATAATAttt                                                          <  2:796038/141‑1 (MQ=255)
                                                                                        aCTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACTACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTTAATAATATTTTTCa                                                      <  2:594534/141‑1 (MQ=255)
                                                                                        aCTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTTAATAATATTTTTCa                                                      >  1:747354/1‑141 (MQ=255)
                                                                                          tATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTTAATAATATTTTTCACt                                                    >  1:594372/1‑141 (MQ=255)
                                                                                              aCTTAAATGACAACCTGTAACATTAGATGAATAAGAAACCTCGGATAATCACTTTAATCAGTACCTATTATTTAACAACGTAGTTACCTTATAGTTGATATCAGAGTTTTTTATTTTAGTTAATAATATTTTTCTCttatt                                                <  2:779721/141‑4 (MQ=255)
                                                                                              aCTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTTAATAATATTTTTCACTTGGt                                                <  2:871603/141‑1 (MQ=255)
                                                                                               cTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTTAATAATATTTTTCACTTGGta                                               >  3:331991/1‑141 (MQ=255)
                                                                                                   aaaGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTTAATAATATTTTTCACTTGGTATaaa                                           >  3:175813/1‑141 (MQ=255)
                                                                                                   aaaGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTTAATAATATTTTTCACTTGGTATaaa                                           >  1:530098/1‑141 (MQ=255)
                                                                                                     aGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTTAATAATATTTTTCACTTGGTATaaaaa                                         <  1:319049/141‑1 (MQ=255)
                                                                                                         aaCCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTTAATAATATTTTTCACTTGGTATAAAAAGcgt                                     >  2:980893/1‑141 (MQ=255)
                                                                                                          cccTGAAACAGTAGATGAATAAGAAACCTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTTAATAATATTTTTCACTTGGTATAAAAAGcgtc                                    <  3:485612/140‑1 (MQ=255)
                                                                                                           ccTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTTAATAATATTTTTCACTTGGTATAAAAAGcgtcg                                   >  2:999748/1‑141 (MQ=255)
                                                                                                                aaCATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTTAATAATATTTTTCACTTGGTATAAAAAGCGTCGTCGct                              <  4:481166/141‑1 (MQ=255)
                                                                                                                aaCATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTTAATAATATTTTTCACTTGGTATAAAAAGCGTCGTCGct                              <  4:101578/141‑1 (MQ=255)
                                                                                                                aaCATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTTAATAATATGTTTCACTTGGTATAAAAAGCGTCGTCGct                              <  3:368679/141‑1 (MQ=255)
                                                                                                                     tAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTTAATAATATTTTTCACTTGGTATAAAAAGCGTCGTCGCTCTGGt                         >  3:53696/1‑141 (MQ=255)
                                                                                                                      aGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTTAATAATATTTTTAACTTGGTATAAAAAGCGTCGTCGCTCTGGTa                        >  2:404213/1‑141 (MQ=255)
                                                                                                                       gATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTTAATAATATTTTTCACTTGGTATAAAAAGCGTCGTCGCTCTGGTAt                       >  2:760111/1‑141 (MQ=255)
                                                                                                                        aTGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGGTGTTTATTTTAGTTAATAATATTTTTCACTTGGTATAAAAAGCGGCGTCGCTCTGGTATc                      >  1:414345/1‑141 (MQ=255)
                                                                                                                         tGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTTAATAATATTTTTCACTTGGTATAAAAAGCGTCGTCGCTCTGGTATCg                     <  3:358740/141‑1 (MQ=255)
                                                                                                                           aaTAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTTAATAATATTTTTCACTTGGTATAAAAAGCGTCGTCGCTCTGGTATCGGa                   <  1:1071910/141‑1 (MQ=255)
                                                                                                                           aaTAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTTAATAATATTTTTCACTTGGTATAAAAAGCGTCGTCGCTCTGGTATCGGa                   >  1:1007990/1‑141 (MQ=255)
                                                                                                                               aGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTTAATAATATTTTTCTTTTTTTATAAAAACCGTCGTCGCTCTGGTATCGGAAATa               >  2:583066/1‑141 (MQ=255)
                                                                                                                                gAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTTAATAATATTTTTCACTTGGTATAAAAAGCGTCGTCGCTCTGGTATCGGAAATAc              >  3:265493/1‑141 (MQ=255)
                                                                                                                                 aaaaCTCTGATAtcacctataaggtaactacgttgttaaataatagttacttgctaaagtgattatcagagttttcttattcatctaatgtttcaggttgtcttttaagtgatagtaataaaattaaaatcataataagaa             <  4:358103‑M1/141‑130 (MQ=255)
                                                                                                                                 aaaaCTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTTAATAATATTTTTCACTTGGTATAAAAAGCGTCGTCGCTCTGGTATCGGAAATACt             >  1:132772/1‑141 (MQ=255)
                                                                                                                                  aaaCTCTGATAtcacctataaggtcactacgttgttaaataatagttacttgctaaagtgattatcagagttttcttatttatctaatgtttcaggttgtcatttaagtgatagtaataaaattaaaatcataattagaat            >  2:1004866‑M1/1‑11 (MQ=255)
                                                                                                                                  aaaCTCTGATAtcacctataaggtaactaagttgttaaaataatagttacttgctaaagtaattatcagagttttcttattcatctaatgtttcaggttgtcttttaagtgatagtaataaaattaaaatcataataagaa            >  4:482076‑M1/1‑11 (MQ=255)
                                                                                                                                  aaaCTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTTAATAATATTTTTCACTTGGTATAAAAAGCGTCGTCGCTCTGGTATCGGAAATACTg            <  3:222243/141‑1 (MQ=255)
                                                                                                                                   aaCTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGAtatcagagttttcttattcatctaatgtttcaggttgtcttttaagtgatagtaataaaattaaaatcataataagaatg           <  2:259606‑M2/141‑81 (MQ=255)
                                                                                                                                    aCTCTGATAtcacctataaggtaactacgttgttaaataatagttacttgctaaagtgattatcagagttttcttattcatctaatgtttcaggttgtcttttaagtgatagtaataaaattaaaatcataataagaatga          >  3:431308‑M1/1‑9 (MQ=255)
                                                                                                                                      tctGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTTAATAATATTTTTCACTTGGTATAAAAAGCGTCGTCGCTCTGGTATCGGAAATACTGGATa        <  1:899846/141‑1 (MQ=255)
                                                                                                                                       ctGATAtcacctataaggtaactacgttgttaaataatagttacttgctaaagtgattatcagagttttcttattcatctaatgtttcaggttgtcttttaagtgatagtaataaaattaaaatcataataagaatgatgc       >  3:139203‑M1/1‑6 (MQ=255)
                                                                                                                                        tGATAtcacctataaggtaactacgttgttaaataatagttacttgctaaagtgattatcagagttttcttattcatctaatgtttcaggttgtcttttaagtgatagtaataaaattaaaatcataataagaatgatgcc      >  1:558564‑M1/1‑5 (MQ=255)
                                                                                                                                        tGATAtcacctataaggtaactacgttgttaaataatagttacttgctaaagtgattatcagagttttcttattcatctaatgtttcaggttgtcttttaagtgatagtaataaaattaaaatcataataagaatgatgcc      >  4:371905‑M1/1‑5 (MQ=255)
                                                                                                                                         gATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTTAATAATATTTTTCACTTGGTATAAAAAGCGTCGTCGCTCTGGTATCGGAAATACTGGATAAat     <  2:1020554/141‑1 (MQ=255)
                                                                                                                                          atatcacctataaggtaactacgttgttaaataatagttacttgctaaagtgattatcagagttttcttattcatctaatgtttcaggttgtcttttaagtgatagtaataaaattaaaatcataataagaatgatgccta    <  2:526648‑M1/141‑139 (MQ=255)
                                                                                                                                          atatcacctataaggtaactacgttgttaaataatagttacttgctaaagtgattatcagagttttcttattcatctaatgtttcaggttgtcttttaagtgatagtaataaaattaaaatcataataagaatgatgccta    >  4:389983‑M1/1‑3 (MQ=255)
                                                                                                                                          aTAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGAtatcagagttttcttattcatctaatgtttcaggttgtcttttaagtgatagtaataaaattaaaatcatactaagaatgatgccta    <  1:811520‑M2/141‑88 (MQ=255)
                                                                                                                                          aTAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTTAATAATATTTTTCACTTGGTATAAAAAGCGTCGTCGCTCTGGTATCGGAAATACTGGATAAata    <  3:162346/141‑1 (MQ=255)
                                                                                                                                          aTAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTTAATAATATTTTTCACTTGGTATAAAAAGCGTCGTCGCTCTGGTATCGGAAATACTGGATAAata    <  1:818210/141‑1 (MQ=255)
                                                                                                                                           tatcacctataaggtaactacgttgttaaataatagttacttgctaaagtgattatcagagttttcttattcatctaatgtttcaggttgtcttttaagtgatagtaataaaattaaaatcataataagaatgatgcctac   <  4:354832‑M1/141‑140 (MQ=255)
                                                                                                                                           tAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTTAATAATATTTTTCACTTGGTATAAAAAGCGTCGTCGCTCTGGTATCGGAAATACTGGATAAatat   <  1:95378/141‑1 (MQ=255)
                                                                                                                                           aaaTCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTTAATAATATTTTTCACTTGGTATAAAAAGCGTCGTCGCTCTGGTATCGGAAATACTGGATAAatat   <  2:487304/140‑1 (MQ=255)
                                                                                                                                            aaTCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTTAATAATATTTTTCACTTGGTATCAAAAGCGTCGCCGCTTTGGTAGCGGAAATACTGGATAAATATg  <  2:53855/141‑1 (MQ=255)
                                                                                                                                            aaTCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTTAATAATATTTTTCACTTGGTATAAAAAGCGTCGTCGCTCTGGTATCGGAAATACTGGATAAATATg  <  1:481837/141‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                            
CCGTTATCGCAAGCAGTCTATGGTTACATGTGGCATTCAAACCATTTCAAATCGTAGGCATCATTCTTATTATGATTTTAATTTTATTACTATCACTTAAAAGACAACCTGAAACATTAGATGAATAAGAAAACTCTGATAATCACTTTAGCAAGTAACTATTATTTAACAACGTAGTTACCTTATAGGTGATATCAGAGTTTTTTATTTTAGTTAATAATATTTTTCACTTGGTATAAAAAGCGTCGTCGCTCTGGTATCGGAAATACTGGATAAATATG  >  USA300TCH1516_ALE/2669936‑2670216

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.