| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2679992 = | 127 (0.910) | 4 (0.030) | 4/228 | NT | 3.3% | intergenic (+44/+716) | ssaA2_4/USA300HOU_RS13810 | Staphylococcal secretory antigen ssaA2/hypothetical protein |
| ? | USA300TCH1516_ALE | 2681425 = | 121 (0.980) | intergenic (‑460/+119) | USA300HOU_RS13810/mvaA | hypothetical protein/3‑hydroxy‑3‑methylglutaryl‑coenzyme A reductase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTTATAGCGAATTATTTAAATAATAGCATAAAATTTTATATATAGATTATGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2680146‑2679992‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaacttctatcacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTCTAATT > USA300TCH1516_ALE/2681425‑2681559 GTTATAGCGAATTATTTAAATAATAGCATAAAATTTTATATATAGATTATGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATA < 1:201464/141‑1 aaAGCGAATTATATAAACAATAGAATAAAATTTTATATATAGATTATGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAA < 2:104752/139‑1 AGCGAATTATTTAAATAATAGCATAAAATTTTATATATAGATTATGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAAC > 4:317905/1‑141 GCGAATTATTTAAATAATAGCATAAAATTTTATATATAGATTATGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACT > 4:295460/1‑141 GCGAATTATTTAAATAATAGCATAAAATTTTATATATAGATTATGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACT > 1:978664/1‑141 CGAATTATTTAAATAATAGCATAAAATTTTATATATAGATTATGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTT < 1:983658/141‑1 ATTATTTAAATAATAGCATAAAATTTTATATATAGATTATGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTA > 2:708017/1‑141 ATTATTTAAATAATAGCATAAAATATTATATATAGATTATGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTA < 3:143858/141‑1 TATTTAAATAATAGCATAAAATTTTATATATAGATTATGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATC > 1:379122/1‑141 ATTTAAATAATAGCATAAAATTTTATATATAGATTATGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCA < 3:94456/141‑1 ATTTAAATAATAGCATAAAATTTTATATATAGATTATGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCA > 2:695097/1‑141 GATTATGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGAT < 4:223645/141‑1 TTATGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAG < 2:999709/141‑1 TAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTT < 2:688180/141‑1 AGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA < 3:448511/141‑1 AAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGT > 2:409357/1‑141 AAAACTTCTATCACGANCGCTTCAATTTCNTGTATGCGTGTGATAGAAGTTTTTATTTTTGCTAATATTAATTTACCTAAGTGTTACGATGTACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTT > 1:1129582/1‑141 AAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTT > 4:47797/1‑141 AAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTT > 1:811209/1‑141 AAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTT > 2:845877/1‑141 AAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTG > 3:78201/1‑141 AACTTCTATCCCGATCTCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGT < 1:949775/141‑1 AACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGT > 1:754182/1‑141 AACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGT > 4:489434/1‑141 ACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTC < 3:475248/141‑1 ACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTC > 1:744934/1‑141 CTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTCT > 2:208389/1‑141 CTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTCT < 4:327334/141‑1 CTTCTATCACGAACGCTTCAATTTCCTGTACGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTC < 3:382346/140‑1 CTTCTATCACGAACGCTTCAATTTCCTGTACGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTC > 4:382346/1‑140 TTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTCTA > 1:551198/1‑141 TCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTCTAA > 3:273800/1‑141 TCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTCTAA < 1:1102541/141‑1 CTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTCTAAT > 2:432117/1‑141 CTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTCTAAT > 2:865501/1‑141 CTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTCTAAT > 1:192657/1‑141 CTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTCTAAT > 2:12221/1‑141 TATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTCTAATT > 4:381539/1‑141 TATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTCTAATT > 2:256848/1‑141 TATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTCTAATT > 3:394544/1‑141 TATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTCTAATT > 1:99220/1‑141 GTTATAGCGAATTATTTAAATAATAGCATAAAATTTTATATATAGATTATGCTAAAGATGAAATAATAGTTGAAGAAGAAATATACGTTCAATTACGGCAATTTGAAATTTGTAGAAGTAATAATATAATTTCATAAAATAAAAACTTCTATCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2680146‑2679992‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaacttctatcacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTCTAATT > USA300TCH1516_ALE/2681425‑2681559 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |