BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2679992 =	127 (0.910)	4 (0.030)	4/228	NT	3.3%	intergenic (+44/+716)	ssaA2_4/USA300HOU_RS13810	Staphylococcal secretory antigen ssaA2/hypothetical protein
*	?	USA300TCH1516_ALE	2681425 =	121 (0.980)	4 (0.030)	4/228	NT	3.3%	intergenic (‑460/+119)	USA300HOU_RS13810/mvaA	hypothetical protein/3‑hydroxy‑3‑methylglutaryl‑coenzyme A reductase
Rejected: Frequency below/above cutoff threshold.

Only 100 of 164 total aligned reads displayed.

GGAACTTGAAGAATCTAAGACTGTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTCTAATTTCTTGT  >  USA300TCH1516_ALE/2681285‑2681565

ggAACTTGAAGAATCTAAGACTGTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACg                                                                                                                                               >  1:845116/1‑141 (MQ=255)

  aaCTTGAAGAATCTAAGACTGTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGaa                                                                                                                                             >  1:898536/1‑141 (MQ=255)

   aCTTGAAGAATCTAAGACTGTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAAc                                                                                                                                            >  1:1017349/1‑141 (MQ=255)

   aCTTGAAGAATCTAAGACTGTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAAc                                                                                                                                            >  3:169843/1‑141 (MQ=255)

     ttGAAGAATCTAAGACTGTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGc                                                                                                                                          <  1:993625/141‑1 (MQ=255)

       gaagaaTCTAAGACTGTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCtt                                                                                                                                        <  3:170643/141‑1 (MQ=255)

       gaagaaTCTAAGACTGTTAAAATCGAGACAATAAGAAACTAGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTGACTAATC‑AAAAAACGTCTATCACGACCGCtt                                                                                                                                        <  4:375383/141‑1 (MQ=255)

          gaaTCTAAGACTGTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCaa                                                                                                                                     >  4:441525/1‑141 (MQ=255)

              cTAAGACTGTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTc                                                                                                                                 >  1:241654/1‑141 (MQ=255)

              cTAAGACTGTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTc                                                                                                                                 >  1:776541/1‑141 (MQ=255)

               tAAGACTGTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTcc                                                                                                                                <  2:362596/141‑1 (MQ=255)

                aaGACTGTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATCAAAAAAACTTCTATCACGAACGCTTCAATTTcc                                                                                                                                <  4:41855/141‑1 (MQ=255)

                aaGACTGTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCt                                                                                                                               <  2:620470/141‑1 (MQ=255)

                aaGACTGTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCt                                                                                                                               >  3:176517/1‑141 (MQ=255)

                aaGACTGTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCt                                                                                                                               <  1:291974/141‑1 (MQ=255)

                  gACTGTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGt                                                                                                                             <  2:176/141‑1 (MQ=255)

                   aCTGTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTa                                                                                                                            <  1:381435/141‑1 (MQ=255)

                      gTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGc                                                                                                                         >  2:121965/1‑141 (MQ=255)

                       ttAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCg                                                                                                                        >  2:543067/1‑141 (MQ=255)

                             tCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGAt                                                                                                                  >  2:189845/1‑141 (MQ=255)

                             tCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGAt                                                                                                                  >  2:408724/1‑141 (MQ=255)

                              gattatgctaaagatgaaataatagttgaagaagaaatatacgttcaattacggcaatttgaaatttgtagaagtaataatataatttcataaaataaaaacttctatcacGAACGCTTCAATTTCCTGTATGCGTGTGAt                                                                                                                  <  4:223645‑M2/30‑1 (MQ=255)

                               gagaCAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAg                                                                                                                <  2:1095300/141‑1 (MQ=255)

                                ttatgctaaagatgaaataatagttgaagaagaaatatacgttcaattacggcaatttgaaatttgtagaagtaataatataatttcataaaataaaaacttctatcacGAACGCTTCAATTTCCTGTATGCGTGTGATAg                                                                                                                <  2:999709‑M2/32‑1 (MQ=255)

                                  aCAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAg                                                                                                             >  4:13346/1‑141 (MQ=255)

                                    aaTAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATTAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGtt                                                                                                           <  3:423053/141‑1 (MQ=255)

                                    aaTAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGtt                                                                                                           <  3:441525/141‑1 (MQ=255)

                                      taaagatgaaataatagttgaagaagaaatatacgttcaattacggcaatttgaaatttgtagaagtaataatataatttcataaaataaaaacttctatcacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGttt                                                                                                          <  2:688180‑M2/38‑1 (MQ=255)

                                      tAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGtttt                                                                                                         >  3:200866/1‑141 (MQ=255)

                                         agatgaaataatagttgaagaagaaatatacgttcaattacggcaatttgaaatttgtagaagtaataatataatttcataaaataaaaacttctatcacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTa                                                                                                       <  3:448511‑M2/41‑1 (MQ=255)

                                          aaaCTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑tt                                                                                                    <  4:163471/141‑1 (MQ=255)

                                           aaCTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑ttt                                                                                                   <  1:753820/141‑1 (MQ=255)

                                            aCTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGAGTGATAGAAGTTTTTA‑tttt                                                                                                  >  1:364071/1‑141 (MQ=255)

                                             cTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGTGTGTGATAGAAGTTTTTA‑ttttt                                                                                                 >  2:813435/1‑141 (MQ=255)

                                                  tCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGAAATAATAATA‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCa                                                                                            <  2:1182303/141‑1 (MQ=255)

                                                    cAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCata                                                                                          <  2:1093276/141‑1 (MQ=255)

                                                      aaTTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATAtt                                                                                        <  2:989791/141‑1 (MQ=255)

                                                       aTTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTa                                                                                       >  2:1051232/1‑141 (MQ=255)

                                                       aTTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTa                                                                                       >  3:474452/1‑141 (MQ=255)

                                                        tttGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTaa                                                                                      <  2:933067/141‑1 (MQ=255)

                                                         ttGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAAt                                                                                     >  4:247090/1‑141 (MQ=255)

                                                          tGAATCCNATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAAtt                                                                                    <  2:894701/141‑1 (MQ=255)

                                                              tCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATc                                                                                >  1:1074636/1‑141 (MQ=255)

                                                              tCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATc                                                                                >  1:421588/1‑141 (MQ=255)

                                                                  ataATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAg                                                                            >  2:615205/1‑141 (MQ=255)

                                                                     aTGAATTCGTTTCATGAATAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAgcgc                                                                         <  3:52058/141‑1 (MQ=255)

                                                                     aTGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAgcgc                                                                         <  1:1082179/141‑1 (MQ=255)

                                                                     aTGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAgcgc                                                                         <  1:787096/141‑1 (MQ=255)

                                                                      tGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCt                                                                        <  1:529357/141‑1 (MQ=255)

                                                                          ttCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTATTTTATCTAAGCGCTACGa                                                                    >  4:48515/1‑141 (MQ=255)

                                                                          ttCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATGTAAGCGCTACGa                                                                    >  4:406354/1‑141 (MQ=255)

                                                                          ttCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGa                                                                    <  2:327051/141‑1 (MQ=255)

                                                                          ttCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGa                                                                    >  3:91464/1‑141 (MQ=255)

                                                                           tCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGAt                                                                   >  2:560207/1‑141 (MQ=255)

                                                                              tctcATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGga                                                                >  1:818687/1‑141 (MQ=255)

                                                                               ctcATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAACGCTACGATGgac                                                               >  4:199001/1‑141 (MQ=255)

                                                                                 cATGAAGAAGTTATTTANTTTTCATTAGACTGANTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGgactg                                                             >  1:699690/1‑141 (MQ=255)

                                                                                  aTGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGgactga                                                            <  2:95034/141‑1 (MQ=255)

                                                                                  aTGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGgactga                                                            >  2:42111/1‑141 (MQ=255)

                                                                                    gaagaaGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGgactgact                                                          <  1:127156/141‑1 (MQ=255)

                                                                                    gaagaaGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGgactgact                                                          <  4:283675/141‑1 (MQ=255)

                                                                                    gaagaaGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGgactgact                                                          <  2:921104/141‑1 (MQ=255)

                                                                                      agaagTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTa                                                        <  3:347389/141‑1 (MQ=255)

                                                                                       gaagTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACGTaa                                                       >  3:483012/1‑141 (MQ=255)

                                                                                        aagTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTaaa                                                      <  2:561018/141‑1 (MQ=255)

                                                                                         agTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAAc                                                     >  1:901988/1‑141 (MQ=255)

                                                                                            tATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACttt                                                  <  1:689870/141‑1 (MQ=255)

                                                                                               ttACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCt                                               <  4:337466/141‑1 (MQ=255)

                                                                                                   ttttCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACTAATGCTTCAATTTCCGGTATTCGTGTGATAGAAGTTTTTA‑TTTTTTTTCATATTAATTTATCTAAGCGCTACGATGGACTTACTTAAACTTTTCTTTaa                                           >  4:87708/1‑141 (MQ=25)

                                                                                                     ttCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTaaaa                                         <  1:69936/141‑1 (MQ=255)

                                                                                                     ttCATTAACCTGATTTACTAATC‑AAAAACCTTCTATCTCGAACGCTTCAATTTCCTGTATGCTTGTAATAGAAGTTTTTA‑TTTTTATTCATATTAATTTATCTAAGCGCTACGATGGTCTGACTTAAACTTTTCTTTaaaa                                         <  2:308183/141‑1 (MQ=25)

                                                                                                         ttAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGc                                     <  1:583684/141‑1 (MQ=255)

                                                                                                              cTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTc                                >  4:105280/1‑141 (MQ=255)

                                                                                                                gATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGc                              <  2:502840/141‑1 (MQ=255)

                                                                                                                   ttACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCa                            <  1:1003274/141‑1 (MQ=255)

                                                                                                                   ttACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCAt                           <  1:408724/141‑1 (MQ=255)

                                                                                                                   ttACTAANC‑AAAAAACTTCTATCACGATCGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAATCTTAGTTTCAAAGTCGCTATTCGCCAt                           <  2:898536/141‑1 (MQ=21)

                                                                                                                     aCTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCAttt                         <  3:415844/141‑1 (MQ=255)

                                                                                                                     aCTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCAttt                         <  2:671136/141‑1 (MQ=255)

                                                                                                                       tAATC‑AAAAAACTTCTATCACGACCGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACGTTTCTTTAAAATCGCTATTCGCCATTTAc                       <  3:382373/141‑1 (MQ=255)

                                                                                                                        aaTC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACt                      >  2:987494/1‑141 (MQ=255)

                                                                                                                        aaTC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACt                      >  1:156901/1‑141 (MQ=255)

                                                                                                                        aaTC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACt                      >  2:397057/1‑141 (MQ=255)

                                                                                                                               aaaacttctatcacGANCGCTTCAATTTCNTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGCTAATATTAATTTACCTAAGTGTTACGATGTACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTAttgtt                >  1:1129582‑M2/15‑141 (MQ=255)

                                                                                                                               aaaacttctatcacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTAttgtt                >  2:845877‑M2/15‑141 (MQ=255)

                                                                                                                                 aacttctatcccGATCTCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATtgttgt              <  1:949775‑M2/129‑1 (MQ=255)

                                                                                                                                 aacttctatcacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATtgttgt              >  4:489434‑M2/13‑141 (MQ=255)

                                                                                                                                 aacttctatcacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATtgttgt              >  1:754182‑M2/13‑141 (MQ=255)

                                                                                                                                   cttctatcacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTCt            <  4:327334‑M2/131‑1 (MQ=255)

                                                                                                                                   cttctatcacGAACGCTTCAATTTCCTGTACGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTc             >  4:382346‑M2/11‑140 (MQ=255)

                                                                                                                                   cttctatcacGAACGCTTCAATTTCCTGTACGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTc             <  3:382346‑M2/130‑1 (MQ=255)

                                                                                                                                    ttctatcacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTCTa           >  1:551198‑M2/10‑141 (MQ=255)

                                                                                                                                     tctatcacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTCTaa          >  3:273800‑M2/9‑141 (MQ=255)

                                                                                                                                     tctatcacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTCTaa          <  1:1102541‑M2/133‑1 (MQ=255)

                                                                                                                                      ctatcacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTCTAAt         >  2:12221‑M2/8‑141 (MQ=255)

                                                                                                                                      ctatcacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTCTAAt         >  1:192657‑M2/8‑141 (MQ=255)

                                                                                                                                      ctatcacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTCTAAt         >  2:432117‑M2/8‑141 (MQ=255)

                                                                                                                                       tatcacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTCTAAtt        >  2:256848‑M2/7‑141 (MQ=255)

                                                                                                                                       tatcacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTCTAAtt        >  1:99220‑M2/7‑141 (MQ=255)

                                                                                                                                       tatcacGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTCTAAtt        >  3:394544‑M2/7‑141 (MQ=255)

GGAACTTGAAGAATCTAAGACTGTTAAAATCGAGACAATAAGAAACTCGTTCCAAATTTGAATCCTATAATGAATTCGTCTCATGAAGAAGTTATTTACTTTTCATTAGACTGATTTACTAATC‑AAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTA‑TTTTTGTTCATATTAATTTATCTAAGCGCTACGATGGACTGACTTAAACTTTTCTTTAAAATCGCTATTCGCCATTTACTATTGTTGTCTAATTTCTTGT  >  USA300TCH1516_ALE/2681285‑2681565

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.