BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2679992 =	127 (0.910)	4 (0.030)	4/228	NT	3.3%	intergenic (+44/+716)	ssaA2_4/USA300HOU_RS13810	Staphylococcal secretory antigen ssaA2/hypothetical protein
*	?	USA300TCH1516_ALE	2681425 =	121 (0.980)	4 (0.030)	4/228	NT	3.3%	intergenic (‑460/+119)	USA300HOU_RS13810/mvaA	hypothetical protein/3‑hydroxy‑3‑methylglutaryl‑coenzyme A reductase
Rejected: Frequency below/above cutoff threshold.

Only 100 of 170 total aligned reads displayed.

TATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAA  >  USA300TCH1516_ALE/2679852‑2680131

 aTTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCgtgt                                                                                                                                            <  2:670604/141‑1 (MQ=255)

   tAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGa                                                                                                                                          <  2:1131040/141‑1 (MQ=255)

   tAAAGTTTAAGAATACAACTTATAGCGCACATTAAAATACAATACACGTGTACCAAGTAAAAAGGCAGCACGTAACTTTAACTATAAAAAAAAAAAAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGa                                                                                                                                          <  2:1130861/141‑1 (MQ=25)

     aattagacaacaatagtaaatggcgaatagcgattttaaagaaaagtttaagtcagtccatcgtagcgcttagataaattaatatgaacaaaaataaaaacttctatcacacgcatacaggaaattgaagcgttcGTGATa                                                                                                                                        >  1:99220‑M1/136‑141 (MQ=255)

     aattagacaacaatagtaaatggcgaatagcgattttaaagaaaagtttaagtcagtccatcgtagcgcttagataaattaatatgaacaaaaataaaaacttctatcacacgcatacaggaaattgaagcgttcGTGATa                                                                                                                                        >  4:381539‑M1/136‑141 (MQ=255)

     aattagacaacaatagtaaatggcgaatagcgattttaaagaaaagtttaagtcagtccatcgtagcgcttagataaattaatatgaacaaaaataaaaacttctatcacacgcatacaggaaattgaagcgttcGTGATa                                                                                                                                        >  3:394544‑M1/136‑141 (MQ=255)

      attagacaacaatagtaaatggcgaatagcgattttaaagaaaagtttaagtcagtccatcgtagcgcttagataaattaatatgaacaaaaataaaaacttctatcacacgcatacaggaaattgaagcgttcGTGATAg                                                                                                                                       >  2:12221‑M1/135‑141 (MQ=255)

      attagacaacaatagtaaatggcgaatagcgattttaaagaaaagtttaagtcagtccatcgtagcgcttagataaattaatatgaacaaaaataaaaacttctatcacacgcatacaggaaattgaagcgttcGTGATAg                                                                                                                                       >  1:192657‑M1/135‑141 (MQ=255)

       ttagacaacaatagtaaatggcgaatagcgattttaaagaaaagtttaagtcagtccatcgtagcgcttagataaattaatatgaacaaaaataaaaacttctatcacacgcatacaggaaattgaagcgttcGTGATAGa                                                                                                                                      >  3:273800‑M1/134‑141 (MQ=255)

       ttagacaacaatagtaaatggcgaatagcgattttaaagaaaagtttaagtcagtccatcgtagcgcttagataaattaatatgaacaaaaataaaaacttctatcacacgcatacaggaaattgaagcgttcGTGATAGa                                                                                                                                      <  1:1102541‑M1/8‑1 (MQ=255)

        tagacaacaatagtaaatggcgaatagcgattttaaagaaaagtttaagtcagtccatcgtagcgcttagataaattaatatgaacaaaaataaaaacttctatcacacgcatacaggaaattgaagcgttcGTGATAGaa                                                                                                                                     >  1:551198‑M1/133‑141 (MQ=255)

         agacaacaatagtaaatggcgaatagcgattttaaagaaaagtttaagtcagtccatcgtagcgcttagataaattaatatgaacaaaaataaaaacttctatcacacgcatacaggaaattgaagcgttcGTGATAGAAg                                                                                                                                    <  4:327334‑M1/10‑1 (MQ=255)

          tCAGAATACAACTTTTATCGCACATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGt                                                                                                                                   <  2:579576/141‑1 (MQ=255)

          gacaacaatagtaaatggcgaatagcgattttaaagaaaagtttaagtcagtccatcgtagcgcttagataaattaatatgaacaaaaataaaaacttctatcacacgcgtacaggaaattgaagcgttcGTGATAGAAg                                                                                                                                    <  3:382346‑M1/10‑1 (MQ=255)

          gacaacaatagtaaatggcgaatagcgattttaaagaaaagtttaagtcagtccatcgtagcgcttagataaattaatatgaacaaaaataaaaacttctatcacacgcgtacaggaaattgaagcgttcGTGATAGAAg                                                                                                                                    >  4:382346‑M1/131‑140 (MQ=255)

          gacaacaatagtaaatggcgaatagcgattttaaagaaaagtttaagtcagtccatcgtagcgcttagataaattaatatgaacaaaaataaaaacttctatcacacgcatacaggaaattgaagcgttcGTGATAGAAGt                                                                                                                                   <  3:475248‑M1/11‑1 (MQ=255)

          gacaacaatagtaaatggcgaatagcgattttaaagaaaagtttaagtcagtccatcgtagcgcttagataaattaatatgaacaaaaataaaaacttctatcacacgcatacaggaaattgaagcgttcGTGATAGAAGt                                                                                                                                   >  1:744934‑M1/131‑141 (MQ=255)

           cAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGtt                                                                                                                                  <  3:277832/141‑1 (MQ=255)

           acaacaatagtaaatggcgaatagcgattttaaagaaaagtttaagtcagtccatcgtagcgcttagataaattaatatgaacaaaaataaaaacttctatcacacgcatacaggaaattgaagcgttcGTGATAGAAGtt                                                                                                                                  >  1:754182‑M1/130‑141 (MQ=255)

           acaacaatagtaaatggcgaatagcgattttaaagaaaagtttaagtcagtccatcgtagcgcttagataaattaatatgaacaaaaataaaaacttctatcacacgcatacaggaaattgaagagatcGGGATAGAAGtt                                                                                                                                  <  1:949775‑M1/12‑1 (MQ=255)

            caacaatagtaaatggcgaatagcgattttaaagaaaagtttaagtcagtccatcgtagcgcttagataaattaatatgaacaaaaataaaaacttctatcacacgcatacaggaaattgaagcgttcGTGATAGAAGttt                                                                                                                                 >  3:78201‑M1/129‑141 (MQ=255)

            aGAATACAACTTTTATCGCCCATTAAAATACAATACATGTGTACTAAGCAAAAAGGCAGCACGTTACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGttt                                                                                                                                 <  1:246133/141‑1 (MQ=255)

            aGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGttt                                                                                                                                 <  1:246053/141‑1 (MQ=255)

             aacaatagtaaatggcgaatagcgattttaaagaaaagtttaagtcagtccatcgtagcgcttagataaattaatatgaacaaaaataaaaacttctatcacacgcatacaggaaattgaagcgttcGTGATAGAAGtttt                                                                                                                                >  4:47797‑M1/128‑141 (MQ=255)

             aacaatagtaaatggcgaatagcgattttaaagaaaagtttaagtcagtacatcgtaacacttaggtaaattaatattagcaaaaataaaaacttctatcacacgcatacangaaattgaagcgntcGTGATAGAAGtttt                                                                                                                                >  1:1129582‑M1/128‑141 (MQ=255)

              aaTACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGttttt                                                                                                                               <  2:350267/141‑1 (MQ=255)

                     cTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTtttattttat                                                                                                                        >  2:850942/1‑141 (MQ=255)

                           tCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAatt                                                                                                                  <  1:878262/141‑1 (MQ=255)

                            cGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAatta                                                                                                                 >  4:132172/1‑141 (MQ=255)

                            cGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAatta                                                                                                                 <  4:494112/141‑1 (MQ=255)

                            cGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACATAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAatta                                                                                                                 >  3:411895/1‑141 (MQ=255)

                              cccATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATAGTTACTAATCAAAGAACTTCTATCACGAACGCTTCAATTTCCTATATGCGTGTGATAGAAGTTTTTATTTTATGAAactatt                                                                                                               >  4:433255/1‑140 (MQ=255)

                               ccATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAattatat                                                                                                              >  1:435694/1‑141 (MQ=255)

                               ccATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAataatat                                                                                                              >  2:196429/1‑141 (MQ=255)

                                  ttAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAattatattat                                                                                                           <  1:799108/141‑1 (MQ=255)

                                   tAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATattatt                                                                                                          >  4:217625/1‑141 (MQ=255)

                                    aaaaTACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATGAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATAttatta                                                                                                         <  2:931218/141‑1 (MQ=255)

                                     aaaTACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTAc                                                                                                        <  1:119800/141‑1 (MQ=255)

                                       atacaatacaCGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGTGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACtt                                                                                                      <  1:158081/141‑1 (MQ=255)

                                         acaatacaCGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCt                                                                                                    >  3:432839/1‑141 (MQ=255)

                                          caatacaCGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTa                                                                                                   >  2:1118848/1‑141 (MQ=255)

                                                acGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAAtt                                                                                             >  1:472784/1‑141 (MQ=255)

                                                acGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAAtt                                                                                             >  1:472852/1‑141 (MQ=255)

                                                 cGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAAttt                                                                                            >  4:395001/1‑141 (MQ=255)

                                                 cGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAAttt                                                                                            >  2:40164/1‑141 (MQ=255)

                                                  gtgtACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTc                                                                                           <  2:208440/141‑1 (MQ=255)

                                                    gtACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCaa                                                                                         >  3:70728/1‑141 (MQ=255)

                                                          aGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGcc                                                                                   <  2:835687/141‑1 (MQ=255)

                                                           gCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCg                                                                                  >  1:710826/1‑141 (MQ=255)

                                                           gCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCg                                                                                  >  2:978693/1‑141 (MQ=255)

                                                                 aGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTg                                                                            <  3:136281/141‑1 (MQ=255)

                                                                    cagcaCGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAAc                                                                         >  1:519071/1‑141 (MQ=255)

                                                                    cagcaCGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAAc                                                                         >  3:379833/1‑141 (MQ=255)

                                                                     agcaCGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAattata                                                                                                               <  4:335399/102‑1 (MQ=255)

                                                                     agcaCGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACg                                                                        >  4:232384/1‑141 (MQ=255)

                                                                      gcaCGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGt                                                                       <  3:188027/141‑1 (MQ=255)

                                                                       caCGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGta                                                                      >  1:1018217/1‑141 (MQ=255)

                                                                       caCGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGta                                                                      >  3:151683/1‑141 (MQ=255)

                                                                       caCGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGta                                                                      <  3:321059/141‑1 (MQ=255)

                                                                       caCGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGta                                                                      >  4:278493/1‑141 (MQ=255)

                                                                          gTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTatat                                                                   <  1:394987/141‑1 (MQ=255)

                                                                             aCTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATttc                                                                <  1:1081256/141‑1 (MQ=255)

                                                                              cTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATttct                                                               <  1:151669/141‑1 (MQ=255)

                                                                                     tataTTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCaa                                                        <  2:556660/141‑1 (MQ=255)

                                                                                       tatTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACt                                                      >  1:288869/1‑141 (MQ=255)

                                                                                        atTTACTAATCAAAAAACTTCTATCACGAACGCTTCAGTTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACta                                                     >  1:450605/1‑141 (MQ=255)

                                                                                        atTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACta                                                     <  1:40164/141‑1 (MQ=255)

                                                                                           tACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACtatta                                                  <  2:261794/141‑1 (MQ=255)

                                                                                           tACCAATCAAAAAACTTCTATCCCGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACtatta                                                  <  1:1052076/141‑1 (MQ=255)

                                                                                             cTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTattatt                                                >  1:444372/1‑141 (MQ=255)

                                                                                              tAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTAttt                                               >  2:320254/1‑141 (MQ=255)

                                                                                                aTCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCa                                             >  2:901412/1‑141 (MQ=255)

                                                                                                   taaaaacttctatcacacgcatacaggaaattgaagcgttcGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCt                                          <  3:448511‑M1/100‑1 (MQ=255)

                                                                                                      aaaCTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTa                                       >  1:263469/1‑141 (MQ=255)

                                                                                                       aaCTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAg                                      >  2:974958/1‑141 (MQ=255)

                                                                                                        aCTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGACGATTTTATTTTATCATATTTCATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGc                                     <  1:235906/141‑1 (MQ=37)

                                                                                                        aCTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGc                                     >  4:104835/1‑141 (MQ=255)

                                                                                                        aCTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGc                                     <  1:101990/141‑1 (MQ=255)

                                                                                                         cTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCa                                    >  2:775381/1‑141 (MQ=255)

                                                                                                            ctatcacacgcatacaggaaattgaagcgttcGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATaa                                 <  2:999709‑M1/109‑1 (MQ=255)

                                                                                                            cTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATaa                                 >  4:452589/1‑141 (MQ=255)

                                                                                                             tATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAAt                                >  2:890556/1‑141 (MQ=255)

                                                                                                             tATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAAt                                >  1:974986/1‑141 (MQ=255)

                                                                                                              aTCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATc                               <  1:82138/141‑1 (MQ=255)

                                                                                                                cACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCta                             >  1:681479/1‑141 (MQ=255)

                                                                                                                 aCGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCtat                            >  3:176202/1‑141 (MQ=255)

                                                                                                                   gAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTTTTTTATGAATTTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCtatat                          >  2:419008/1‑141 (MQ=255)

                                                                                                                   gAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGAAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCtatat                          >  3:108803/1‑141 (MQ=255)

                                                                                                                     aCGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCtatatat                        <  1:290431/141‑1 (MQ=255)

                                                                                                                           cAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAAtt                  >  2:267413/1‑141 (MQ=255)

                                                                                                                              tttCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTa               >  2:162944/1‑141 (MQ=255)

                                                                                                                                  cTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAACATTTTATGCt           >  2:754293/1‑141 (MQ=255)

                                                                                                                                  cTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCt           >  3:176559/1‑141 (MQ=255)

                                                                                                                                  cTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCt           >  1:827566/1‑141 (MQ=255)

                                                                                                                                  cTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCt           >  4:331891/1‑141 (MQ=255)

                                                                                                                                  cTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCt           >  2:396338/1‑141 (MQ=255)

                                                                                                                                  cTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCt           >  3:263943/1‑141 (MQ=255)

                                                                                                                                        gCGTGTGATGGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTattatt     >  1:1049501/1‑141 (MQ=255)

                                                                                                                                        gCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTattatt     <  1:1040269/141‑1 (MQ=255)

                                                                                                                                           tgtgATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTaa  >  1:554476/1‑141 (MQ=255)

TATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACGAACGCTTCAATTTCCTGTATGCGTGTGATAGAAGTTTTTATTTTATGAAATTATATTATTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAA  >  USA300TCH1516_ALE/2679852‑2680131

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.