New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | USA300TCH1516_ALE | = 2724829 | 146 (1.040) | 3 (0.020) | 3/246 | NT | 2.1% | coding (466/1107 nt) | USA300HOU_RS14015 | Baeyer‑Villiger flavin‑containing monooxygenase |
? | USA300TCH1516_ALE | = 2724865 | 134 (1.010) | coding (430/1107 nt) | USA300HOU_RS14015 | Baeyer‑Villiger flavin‑containing monooxygenase | |||||
Rejected: Frequency below/above cutoff threshold. |
TCCGGATCATTTAAACCGGTTGTGCTAGTATAAAGTGCGATGTCAGAGCCATTTTTTGCAAGTTGATATGCAGCATCAAAGCCACTTTCATTACCTCCGATAACCACATATTGCCCCTTATTAAAGTTATCAAAGTCTTCAATTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2724684‑2724829 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatttcCCTAAAAAGCCATTTAAATATGGTATTCATTATAGTGAAATTGAAGACTTTGATAACTTTAATAAGGGGCAATATGTGGTTATCGGAGGTAATGAAAGTGGCTTTGATGCTGCATATCAACTTGCAAAAAATGGCTCT < USA300TCH1516_ALE/2724865‑2724728 TCCGGATCATTTAAACCGGTTGTGCTAGTATAAAGTGCGATGTCAGAGCCATTTTTTGCAAGTTGATATGCAGCATCAAAGCCACTTTCATTACCTCCGATAACCACATATTGCCCCTTATTAAAGTTATCAAAGTCTTCA > 1:306242/1‑141 CGGATCATTTAAACCGGTTGTGCTAGTATAAAGTGCGATGTCAGAGCCATTTTTTGCAAGTTGATATGCAGCATCAAAGCCACTTTCATTACCTCCGATAACCACATATTGCCCCTTATTAAAGTTATCAAAGTCTTCAAT < 1:447893/141‑1 CGGATCATTTAAACCGGTTGTGCTAGTATAAAGTGCGATGTCAGAGCCATTTTTTGCAAGTTGATATGCAGCATCAAAGCCACTTTCATTACCTCCGATAACCACATATTGCCCCTTATTAAAGTTATCAAAGTCTTCAAT < 1:447993/141‑1 GGATCATTTAAACCGGTTGTGCTAGTATAAAGTGCGATGTCAGAGCCATTTTTTGCAAGTTGATATGCAGCATCAAAGCCACTTTCATTACCTCCGATAACCACATATTGCCCCTTATTAAAGTTATCAAAGTCTTCAATT < 1:136458/141‑1 CCATTTTTTGCAAGTTGATATGCAGCATCAAAGCCACTTTCATTACCTCCGATAACCACATATTGCCCCTTATTAAAGTTATCAAAGTCTTCAATTTCCCTAAAAAGCCATTTAAATATGGTATTCATTATAGTGAAATTG < 2:293828/141‑1 TAACCACATATTGCCCCTTATTAAAGTTATCAAAGTCTTCAATTTCCCTAAAAAGCCATTTAAATATGGTATTCATTATAG < 3:394224/81‑1 TAACCACATATTGCCCCTTATTAAAGTTATCAAAGTCTTCAATTTCCCTAAAAAGCCATTTAAATATGGTATTCATTATAG > 4:394224/1‑81 AATTTCCCTAAAAAGCCATTTAAATATGGTATTCATTATAGTGAAATTGAAGACTTTGATAACTTTAATAAGGGGCAATATGTGGTTATCGGAGGTAATGAAAGTGGCTTTGATGCTGCATATCAACTTGCAAAAAATGGC < 2:196193/141‑1 ATTTCCCTAAAAAGCCATTTAAATATGGTATTCATTATAGTGAAATTGAAGACTTTGATAACTTTAATAAGGGGCAATATGTGGTTATCGGAGGTAATGAAAGTGGCTTTGATGCTGCATATCAACTTGCAAAAAATGGCT > 2:414220/1‑141 ATTTCCCTAAAAAGCCATTTAAATATGGTATTCATTATAGTGAAATTGAAGACTTTGATAACTTTAATAAGGGGCAATATGTGGTTATCGGAGGTAATGAAAGTGGCTTTGATGCTGCATATCAACTTGCAAAAAATGGCT > 2:665735/1‑141 TTTCCCTAAAAAGCCATTTAAATATGGTATTCATTATAGTGAAATTGAAGACTTTGATAACTTTAATAAGGGGCAATATGTGGTTATCGGAGGTAATGAAAGTGGCTTTGATGCTGCATATCAACTTGCAAAAAATGGCTC < 1:331854/141‑1 TTCCCTAAAAAGCCATTTAAATATGGTATTCATTATAGTGAAATTGAAGACTTTGATAACTTTAATAAGGGGCAATATGTGGTTATCGGAGGTAATGAAAGTGGCTTTGATGCTGCATATCAACTTGCAAAAAATGGCTCT < 1:86445/141‑1 TCCGGATCATTTAAACCGGTTGTGCTAGTATAAAGTGCGATGTCAGAGCCATTTTTTGCAAGTTGATATGCAGCATCAAAGCCACTTTCATTACCTCCGATAACCACATATTGCCCCTTATTAAAGTTATCAAAGTCTTCAATTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2724684‑2724829 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatttcCCTAAAAAGCCATTTAAATATGGTATTCATTATAGTGAAATTGAAGACTTTGATAACTTTAATAAGGGGCAATATGTGGTTATCGGAGGTAATGAAAGTGGCTTTGATGCTGCATATCAACTTGCAAAAAATGGCTCT < USA300TCH1516_ALE/2724865‑2724728 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |