| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2850830 | 140 (1.000) | 4 (0.030) | 4/230 | NT | 3.0% | intergenic (+29/+90) | pcp/USA300HOU_RS14605 | Pyrrolidone‑carboxylate peptidase/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2850851 | 137 (1.100) | intergenic (+50/+69) | pcp/USA300HOU_RS14605 | Pyrrolidone‑carboxylate peptidase/hypothetical protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGGTCATTGGTAAACCCGATACACCATCTATGCCATTAGAAAAGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2850677‑2850830‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaaagcaccctaa‑‑AGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTCAAACCTGCAACTATCTTTTCTAA < USA300TCH1516_ALE/2850851‑2850712 AGGTCATTGGTAAACCCGATACACCATCTATGCCATTAGAAAAGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAAC < 2:147203/141‑1 GTCATTGGTAAACCCGATACACCATCTATGCCATTAGAAAAGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAA > 3:359524/1‑141 GTCATTGGTAAACCCGATACACCATCTATGCCATTAGAAAAGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAA > 3:359519/1‑141 TGGTAAACCCGATACACCATCTATGCCATTAGAAAAGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCA < 1:520871/141‑1 GGTGAACCCGATACACCATCTATGCCATTAGAAAAGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGTCACAACGGAATAGTTATAAGTGCACAAACAAAAGCAC > 2:486742/1‑141 GTAAACCCGATACACCATCTATGCCATTAGAAAAGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACC < 1:1129449/141‑1 GTAAACCCGATACACCATCTATGCCATTAGAAAAGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACC < 4:34543/141‑1 TAAACCCGATACACCATCTATGCCATTAGAAAAGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCC < 1:681804/141‑1 AAACCCGATACACCATCTATGCCATTAGAAAAGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCT > 1:507326/1‑141 AAACCCGATACACCATCTATGCCATTAGAAAAGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCT < 2:422251/141‑1 AAACCCGATACACCATCTATGCCATTAGAAAAGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCT > 2:399353/1‑141 AAACCCGATACACCATCTATGCCATTAGAAAAGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCT < 2:366311/141‑1 AACCCGATACACCATCTATGCCATTAGAAAAGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCTA > 2:37571/1‑141 AACCCGATACACCATCTATGCCATTAGAAAAGATAGTTGCAGGTTTGACTGCAGCCAGTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCTA < 4:490888/141‑1 AGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCTAATTTGTTAGACTTAAACTAACAAATTAGGG < 2:1171979/141‑1 GATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCTAA‑‑AGTTAGACTTAAACTAACAAATTAGGGTGC < 2:358638/141‑1 TGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCT < 1:1078896/95‑1 TGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCT > 2:1078896/1‑95 TACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCTAA‑‑AGTTAGACTTAAACTAACAAATT < 2:194419/81‑1 TACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCTAA‑‑AGTTAGACTTAAACTAACAAATT > 1:194419/1‑81 CAAAAGCACCCTAA‑‑AGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTCAAACCTGCAA < 3:283122/141‑1 AAAAGCACCCTAA‑‑AGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTCAAACCTGCAAC < 1:167513/141‑1 AAAAGCACCCTAA‑‑AGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTCAAACCTGCAAC < 1:886247/141‑1 AAAGCACCCTAA‑‑AGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTCAAACCTGCAACT > 1:1084288/1‑141 AAGCACCCTAA‑‑AGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTCAAACCTGCAACTA > 4:278266/1‑141 atcgCCCTAA‑‑AGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTATTTCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTCGAAGCTGCAACTAT < 2:838070/137‑1 AGCACCCTAA‑‑AGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTCAAACCTGCAACTAT < 1:715986/141‑1 AGCACCCTAA‑‑AGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTCAAACCTGCAACTAT < 4:332178/141‑1 AGCACCCTAA‑‑AGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTCAAACCTGCAACTAT < 2:310207/141‑1 CACCCTAA‑‑AGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTCAAACCTGCAACTATCT < 2:438296/141‑1 CACCCTAA‑‑AGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTCAAACCTGCAACTATCT < 1:375739/141‑1 CACCCTAA‑‑AGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTCAAACCTGCAACTATCT > 2:723226/1‑141 CACCCTAA‑‑AGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTCAAACCTGCAACTATCT < 2:953732/141‑1 CACCCTAA‑‑AGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTCAAACCTGCAACTATCT < 4:265789/141‑1 CACCCTAA‑‑AGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTAAAACCTGCAACTTTCT < 2:953739/141‑1 ACCCTAA‑‑AGTTTGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTCAAACCTGCAACTATCTT > 2:1171962/1‑141 A‑‑AGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTCAAACCTGCAACTATCTTTTCTAA < 1:196289/141‑1 A‑‑AGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTCAAACCTGCAACTATCTTTTCTAA < 1:794016/141‑1 AGGTCATTGGTAAACCCGATACACCATCTATGCCATTAGAAAAGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2850677‑2850830‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaaagcaccctaa‑‑AGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTCAAACCTGCAACTATCTTTTCTAA < USA300TCH1516_ALE/2850851‑2850712 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |