New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2793464 =180 (1.290)3 (0.020) 3/238 NT 1.8% coding (2179/2982 nt) yueB ESX secretion system protein YueB
?USA300TCH1516_ALE 2793513 = 159 (1.230)coding (2130/2982 nt) yueB ESX secretion system protein YueB
Rejected: Frequency below/above cutoff threshold.

Only 100 of 209 total aligned reads displayed.

TGCAATAATACCCGCTTGCTTTTTCAAATCATTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCT  >  USA300TCH1516_ALE/2793324‑2793603
                                                                                                                                            |                                                                                                                                           
tGCAATTATACCCGCTTGCTTTTTCAAATCATTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCGTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTgaga                                                                                                                                             <  4:193776/141‑1 (MQ=255)
 gCAATAATACCCGCTTGCTTTTTCAAATCATTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGaa                                                                                                                                            >  1:1001545/1‑141 (MQ=255)
 gCAATAATACCCGCTTGCTTTTTCAAATCATTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGaa                                                                                                                                            >  1:1139525/1‑141 (MQ=255)
   aataatACCCGCTTGCTTTTTCAAATCATTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTAGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGaaaa                                                                                                                                          >  3:370338/1‑141 (MQ=255)
       ataCCCGCTTGCTTTTTCAAATCATTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCa                                                                                                                                      <  2:194637/141‑1 (MQ=255)
        taCCCGCTTGCTTTTTCAAATCATTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAg                                                                                                                                     >  1:828341/1‑141 (MQ=255)
        gctaaagctgctaactttgtgcgcaatgacttaccacagttagaacagcgattaactaatgcgacagcaagtgtgaataaaaatttaccaacgttattaaatggttatgatcaagcggtaggattactaaatAAAAATCAg                                                                                                                                     >  4:365148‑M1/133‑141 (MQ=255)
         aCCCGCTTGCTTTTTCAAATCATTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGc                                                                                                                                    <  1:1014604/141‑1 (MQ=255)
          cccGCTTGCTTTTTCAAATCATTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCt                                                                                                                                   <  4:416971/141‑1 (MQ=255)
             gcttgcttTTTCAAATCATTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTaaa                                                                                                                                >  1:514284/1‑141 (MQ=255)
                     tttCAAATCATTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATaa                                                                                                                        <  1:824744/141‑1 (MQ=255)
                          aaTCATTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCt                                                                                                                   <  2:866900/141‑1 (MQ=255)
                           aTCATTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCtt                                                                                                                  <  1:895802/141‑1 (MQ=255)
                            tCATTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCttt                                                                                                                 >  1:1167741/1‑141 (MQ=255)
                            tCATTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCttt                                                                                                                 >  4:275973/1‑141 (MQ=255)
                             cATTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCtttt                                                                                                                <  2:390843/141‑1 (MQ=255)
                             cATTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCtttt                                                                                                                <  1:1110529/141‑1 (MQ=255)
                                  ttAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCt                                                                                                           <  1:747956/141‑1 (MQ=255)
                                   tAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAAATTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTACATCTGATAAAGCCTTTTTCGCtt                                                                                                          >  1:743088/1‑141 (MQ=255)
                                         tgtCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCt                                                                                                    <  1:978978/141‑1 (MQ=255)
                                          gtCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAANTCTGATAAAGCCNTTTTCGCTTGTGGCTg                                                                                                   <  1:702694/141‑1 (MQ=255)
                                          gtCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTg                                                                                                   <  4:503664/141‑1 (MQ=255)
                                           tCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCTTTTGTGGCTGa                                                                                                  >  4:312678/1‑141 (MQ=255)
                                            cGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCGGGCAAAAAAAAAAAAAAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGAt                                                                                                 <  2:1092254/141‑1 (MQ=255)
                                            cGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGAt                                                                                                 <  2:992306/141‑1 (MQ=255)
                                             gATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGAtt                                                                                                <  1:466554/141‑1 (MQ=255)
                                              gttagaacagcgattaactaatgcgacagcaagtgtgaataaaaatttaccaacgttattaaatggttatgatcaagcggtaggattactaaatAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGAttt                                                                                               >  2:552587‑M1/95‑141 (MQ=255)
                                                  aTTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTTTTTTTTTTTTTATCATCAGGCATTGTATGTTGTGAAAAATCATCTTAAGCTGGTAATTTCTTTTTCGTTTTTGGCTGATTtttat                                                                                           >  2:298965/1‑141 (MQ=255)
                                                    ttGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTtttattt                                                                                         >  1:1178935/1‑141 (MQ=255)
                                                    ttGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTtttattt                                                                                         >  2:501909/1‑141 (MQ=255)
                                                    ttGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATAAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTtttattt                                                                                         >  1:12110/1‑141 (MQ=255)
                                                      gTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAg                                                                                       >  2:1076060/1‑141 (MQ=255)
                                                         gACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTaa                                                                                    <  1:1138433/141‑1 (MQ=255)
                                                          aCTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAAt                                                                                   <  1:753183/141‑1 (MQ=255)
                                                          aCTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAAt                                                                                   <  2:1086447/141‑1 (MQ=255)
                                                             gCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCt                                                                                <  1:409038/141‑1 (MQ=255)
                                                             gCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCt                                                                                <  1:924810/141‑1 (MQ=255)
                                                             gCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCt                                                                                <  2:1058415/141‑1 (MQ=255)
                                                              catcatCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTa                                                                               <  3:8160/141‑1 (MQ=255)
                                                                   tcTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCt                                                                          <  2:141197/141‑1 (MQ=255)
                                                                      ttGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGa                                                                       <  3:313966/141‑1 (MQ=255)
                                                                       tGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTTAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGAt                                                                      >  2:37844/1‑141 (MQ=255)
                                                                          cTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCAt                                                                   <  2:629503/141‑1 (MQ=255)
                                                                             aTTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAAc                                                                <  3:124852/141‑1 (MQ=255)
                                                                             aTTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAAc                                                                >  1:618059/1‑141 (MQ=255)
                                                                                   tGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACCTCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTATTCCTACCGCTTGATCATAACCATTta                                                          <  2:954557/141‑1 (MQ=255)
                                                                                   tGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTta                                                          <  1:343405/141‑1 (MQ=255)
                                                                                    gAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCTCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTtaa                                                         >  2:525685/1‑141 (MQ=255)
                                                                                    gAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTtaa                                                         >  3:41211/1‑141 (MQ=255)
                                                                                     aaaaTTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTtaat                                                        <  2:564744/141‑1 (MQ=255)
                                                                                      aaaTTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTtaata                                                       <  2:412411/141‑1 (MQ=255)
                                                                                           ttATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGtt                                                  >  3:261792/1‑141 (MQ=255)
                                                                                             aTTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTgg                                                <  2:315579/141‑1 (MQ=255)
                                                                                              ttCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGt                                               >  2:725439/1‑141 (MQ=255)
                                                                                              ttCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGt                                               <  1:302365/141‑1 (MQ=255)
                                                                                               tCGCTTTTTTCACATCTGTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTa                                              <  3:152166/141‑1 (MQ=255)
                                                                                                cGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTaa                                             <  1:130027/141‑1 (MQ=255)
                                                                                                cGCTTTTTTCAAATCTTTCTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTATTCCTACCGCTTGATCATAACCATTTAATAACGTTGGTaa                                             <  3:265229/141‑1 (MQ=255)
                                                                                                cGCTGTTTTCAAATCTTTTTCAACATCATGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTaa                                             <  2:799969/141‑1 (MQ=255)
                                                                                                  cTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAAt                                           >  3:290250/1‑141 (MQ=255)
                                                                                                  cTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAAt                                           >  1:179129/1‑141 (MQ=255)
                                                                                                     ttttCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAAtttt                                        >  1:698005/1‑141 (MQ=255)
                                                                                                       ttCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTa                                      <  2:1028886/141‑1 (MQ=255)
                                                                                                        tCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAATTTTTTAt                                     >  3:103/1‑141 (MQ=255)
                                                                                                          taaTTTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTc                                   >  2:594908/2‑141 (MQ=255)
                                                                                                          aaaTCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTc                                   >  3:136612/1‑141 (MQ=255)
                                                                                                          aaaTCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTc                                   >  4:437592/1‑141 (MQ=255)
                                                                                                          aaaTCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTc                                   >  3:215041/1‑141 (MQ=255)
                                                                                                          aaaTCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTc                                   >  3:281256/1‑141 (MQ=255)
                                                                                                           aaTCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTca                                  >  1:523273/1‑141 (MQ=255)
                                                                                                            aTCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTcac                                 <  1:673787/141‑1 (MQ=255)
                                                                                                            aTCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTCGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTcac                                 <  1:947969/141‑1 (MQ=255)
                                                                                                               tttttCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACt                              <  2:468790/141‑1 (MQ=255)
                                                                                                                 tttCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTg                            >  2:876821/1‑141 (MQ=255)
                                                                                                                 tttCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTg                            >  1:1155036/1‑141 (MQ=255)
                                                                                                                  ttCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGc                           <  4:246592/141‑1 (MQ=255)
                                                                                                                    cAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCtt                         >  4:374216/1‑140 (MQ=255)
                                                                                                                    cAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTg                         <  1:799489/141‑1 (MQ=255)
                                                                                                                    cAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTg                         >  3:153340/1‑141 (MQ=255)
                                                                                                                     aaCATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTTTTTTTTTTTTTATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTTCTGt                        >  2:203533/1‑141 (MQ=255)
                                                                                                                     aaCATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGt                        >  3:346859/1‑141 (MQ=255)
                                                                                                                       cATAAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCg                      >  4:430855/1‑141 (MQ=255)
                                                                                                                        ttttttcAATTTATTTTGAGAAAAATCAGCTTAATCTGATAAAGCCTTTTTCGCTTGTGGCTGCTTTTTATTTAGTTTTCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGc                     >  2:910274/7‑141 (MQ=255)
                                                                                                                         ttttgCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTTTTTTTTATTTTTTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGct                    >  2:124374/5‑140 (MQ=255)
                                                                                                                         tCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCa                    >  1:81335/1‑141 (MQ=255)
                                                                                                                         tCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCa                    <  2:220253/141‑1 (MQ=255)
                                                                                                                          cAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCAt                   <  2:657150/141‑1 (MQ=255)
                                                                                                                             gCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAg                <  3:324893/141‑1 (MQ=255)
                                                                                                                             gCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAg                >  1:187892/1‑141 (MQ=255)
                                                                                                                             gCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAg                >  1:793225/1‑141 (MQ=255)
                                                                                                                              cAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTTTTTTTTTTTTTATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGt               >  2:1148944/1‑141 (MQ=255)
                                                                                                                                atttatttTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTa             >  1:384796/1‑141 (MQ=255)
                                                                                                                                    atttTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCg         <  1:103785/141‑1 (MQ=255)
                                                                                                                                     ttttGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGc        <  1:967786/141‑1 (MQ=255)
                                                                                                                                        tGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGt     <  2:280900/141‑1 (MQ=255)
                                                                                                                                        tGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGt     <  1:873327/141‑1 (MQ=255)
                                                                                                                                         gagaAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGtt    <  3:143003/141‑1 (MQ=255)
                                                                                                                                         gagaAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGtt    <  1:1078072/141‑1 (MQ=255)
                                                                                                                                          agaAAAATCAGCTAAATCTGATAAAGCCTTTTTCTCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTc   >  4:381125/1‑141 (MQ=255)
                                                                                                                                           aAAAAAGCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCt  >  1:601731‑M1/2‑141 (MQ=255)
                                                                                                                                            |                                                                                                                                           
TGCAATAATACCCGCTTGCTTTTTCAAATCATTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCT  >  USA300TCH1516_ALE/2793324‑2793603

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.