BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2793464 =	180 (1.290)	3 (0.020)	3/238	NT	1.8%	coding (2179/2982 nt)	yueB	ESX secretion system protein YueB
*	?	USA300TCH1516_ALE	2793513 =	159 (1.230)	3 (0.020)	3/238	NT	1.8%	coding (2130/2982 nt)	yueB	ESX secretion system protein YueB
Rejected: Frequency below/above cutoff threshold.

Only 100 of 196 total aligned reads displayed.

ATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTGCGCACAAAGTTAGCAGCTTTAGCTACATCACT  >  USA300TCH1516_ALE/2793374‑2793653

gaacagcgattaactaatgcgacagcaagtgtgaataaaaatttaccaacgttattaaatggttatgatcaagcggtaggattactaaatAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTtttat                                                                                                                                             >  1:904817‑M1/91‑141 (MQ=255)

aTTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTTTTTTTTTTTTTATCATCAGGCATTGTATGTTGTGAAAAATCATCTTAAGCTGGTAATTTC‑TTTTTCGTTTTTGGCTGATTtttat                                                                                                                                             >  2:298965/1‑141 (MQ=255)

 tttGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTtttatt                                                                                                                                            >  1:1058415/1‑141 (MQ=255)

  ttGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATAAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTtttattt                                                                                                                                           >  1:12110/1‑141 (MQ=255)

   tGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTtttattta                                                                                                                                          >  1:111676/1‑141 (MQ=255)

    gTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAg                                                                                                                                         >  2:1076060/1‑141 (MQ=255)

           gCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCt                                                                                                                                  <  1:924810/141‑1 (MQ=255)

           gCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCt                                                                                                                                  <  1:409038/141‑1 (MQ=255)

           gCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCt                                                                                                                                  <  2:1058415/141‑1 (MQ=255)

            catcatCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTa                                                                                                                                 <  1:961070/141‑1 (MQ=255)

              tcatcTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTAcc                                                                                                                               >  4:410460/1‑141 (MQ=255)

               catcTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTAccc                                                                                                                              >  2:873327/1‑140 (MQ=255)

                 tcTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCt                                                                                                                            <  2:141197/141‑1 (MQ=255)

                    ttGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGa                                                                                                                         <  3:313966/141‑1 (MQ=255)

                     tGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTTAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGAt                                                                                                                        >  2:37844/1‑141 (MQ=255)

                     tGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTTTTTTGTGGTTGTTTTTTATTTAGTAATGCTACGGCTTGAt                                                                                                                        >  2:714009/1‑141 (MQ=255)

                        cTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCAt                                                                                                                     <  2:629503/141‑1 (MQ=255)

                           aTTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAAc                                                                                                                  <  3:124852/141‑1 (MQ=255)

                           aTTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAAc                                                                                                                  >  1:747968/1‑141 (MQ=255)

                            tttCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAAcc                                                                                                                 <  2:577721/141‑1 (MQ=255)

                             ttCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCa                                                                                                                <  2:54625/141‑1 (MQ=255)

                             ttCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCa                                                                                                                <  3:1472/141‑1 (MQ=255)

                                ttGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCAttt                                                                                                             <  1:609152/141‑1 (MQ=255)

                                 tGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACCTCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTATTCCTACCGCTTGATCATAACCATTta                                                                                                            <  2:954557/141‑1 (MQ=255)

                                 tGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTta                                                                                                            <  1:343405/141‑1 (MQ=255)

                                  gAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTtaa                                                                                                           <  3:371396/141‑1 (MQ=255)

                                         ttATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGtt                                                                                                    >  3:261792/1‑141 (MQ=255)

                                           aTTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTgg                                                                                                  >  3:471003/1‑141 (MQ=255)

                                            ttCGCTTTTTTTAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGt                                                                                                 >  2:725501/1‑141 (MQ=255)

                                            ttCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGt                                                                                                 <  3:328186/141‑1 (MQ=255)

                                             tCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTa                                                                                                >  2:235505/1‑141 (MQ=255)

                                             tCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTa                                                                                                <  1:496689/141‑1 (MQ=255)

                                              cGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTaa                                                                                               <  1:130027/141‑1 (MQ=255)

                                                cTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAAt                                                                                             >  1:179129/1‑141 (MQ=255)

                                                     ttCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTa                                                                                        <  2:1028886/141‑1 (MQ=255)

                                                      tCAAATTTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTAt                                                                                       >  2:888283/1‑141 (MQ=255)

                                                      tCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAATTTTTTAt                                                                                       >  3:103/1‑141 (MQ=255)

                                                      tCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTAt                                                                                       >  2:413463/1‑141 (MQ=255)

                                                        taaTTTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTc                                                                                     >  2:594908/2‑141 (MQ=255)

                                                        aaaTCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTc                                                                                     >  4:437592/1‑141 (MQ=255)

                                                        aaaTCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTc                                                                                     >  3:136612/1‑141 (MQ=255)

                                                        aaaTCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTc                                                                                     >  3:281256/1‑141 (MQ=255)

                                                         aaTCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTca                                                                                    >  1:523273/1‑141 (MQ=255)

                                                          aTCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTcac                                                                                   >  3:199506/1‑141 (MQ=255)

                                                          aTCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTcac                                                                                   >  1:820278/1‑141 (MQ=255)

                                                          aTCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTCGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTcac                                                                                   <  1:947969/141‑1 (MQ=255)

                                                             tttttCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACt                                                                                <  4:194464/141‑1 (MQ=255)

                                                               tttCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTg                                                                              >  1:1155036/1‑141 (MQ=255)

                                                                ttCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGc                                                                             <  2:558691/141‑1 (MQ=255)

                                                                ttCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGc                                                                             <  2:818952/141‑1 (MQ=255)

                                                                 tCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCt                                                                            <  4:340600/141‑1 (MQ=255)

                                                                 tCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCt                                                                            >  1:970563/1‑141 (MQ=255)

                                                                  cAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCtt                                                                           >  4:374216/1‑140 (MQ=255)

                                                                  cAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTg                                                                           >  3:153340/1‑141 (MQ=255)

                                                                  cAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTg                                                                           <  1:799489/141‑1 (MQ=255)

                                                                     cATAAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCg                                                                        >  4:430855/1‑141 (MQ=255)

                                                                       ttttgCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTTTTTTTTATTTTTTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGct                                                                      >  2:124374/5‑140 (MQ=255)

                                                                       tCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCa                                                                      <  2:220253/141‑1 (MQ=255)

                                                                        cAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCAt                                                                     <  2:657150/141‑1 (MQ=255)

                                                                           gCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAg                                                                  >  1:187892/1‑141 (MQ=255)

                                                                           gCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAg                                                                  >  1:793225/1‑141 (MQ=255)

                                                                            cAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTTTTTTTTTTTTTATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGt                                                                 >  2:1148944/1‑141 (MQ=255)

                                                                            cAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGt                                                                 >  2:39602/1‑141 (MQ=255)

                                                                            cAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGt                                                                 <  1:1003804/141‑1 (MQ=255)

                                                                             aaTTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGt                                                                 >  2:199852/1‑141 (MQ=255)

                                                                              atttatttTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTa                                                               >  1:384796/1‑141 (MQ=255)

                                                                                      tGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGt                                                       <  1:873327/141‑1 (MQ=255)

                                                                                       gagaAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGtt                                                      <  1:702075/141‑1 (MQ=255)

                                                                                       gagaAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGtt                                                      <  3:143003/141‑1 (MQ=255)

                                                                                        agaAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCTCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTc                                                     >  4:381125/1‑141 (MQ=255)

                                                                                           AAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTaa                                                  >  1:393656‑M1/1‑141 (MQ=255)

                                                                                            aaaatcagccacaagcgaaaaaggctttatcagatttagctgatttttATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTaa                                                  >  1:1036787‑M2/49‑141 (MQ=255)

                                                                                            AAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAAc                                                 >  1:17516‑M1/1‑141 (MQ=255)

                                                                                               TCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACtgt                                              <  1:584765‑M1/141‑1 (MQ=255)

                                                                                                 AGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTGGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTgg                                            >  4:263499‑M1/1‑141 (MQ=255)

                                                                                                 AGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTgg                                            >  1:622601‑M1/1‑141 (MQ=255)

                                                                                                  GCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGt                                           <  1:763457‑M1/141‑1 (MQ=255)

                                                                                                   CTAAATCTGATAAAGCC‑TTTTTTTTTTTTTTCTGATTTTTATTTAGTAATCCTACTGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTa                                          <  4:65379‑M1/141‑1 (MQ=255)

                                                                                                   CTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTa                                          >  2:99056‑M1/1‑141 (MQ=255)

                                                                                                     aaaTCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAg                                        <  4:170444/141‑1 (MQ=255)

                                                                                                            aTAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTgc                                 <  1:888283/141‑1 (MQ=255)

                                                                                                            aTAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCCAACTGTGGTAAGTCATTgc                                 >  2:776271/1‑141 (MQ=255)

                                                                                                            aTAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGATGGTAAATTTTTATTCACACTTGCTGTCGCATTAGATAATAGCTGTTCTAACTGTAGTAATTCAtgac                                 >  2:1109674/1‑138 (MQ=255)

                                                                                                             tAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTgcg                                >  3:234126/1‑141 (MQ=255)

                                                                                                               aaGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTGCGca                              >  2:483838/1‑141 (MQ=255)

                                                                                                                aGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTGCGcac                             <  4:471003/141‑1 (MQ=255)

                                                                                                                 gCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTGCGcaca                            <  4:290250/141‑1 (MQ=255)

                                                                                                                  cc‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTGCGCACaa                           <  2:108298/141‑1 (MQ=255)

                                                                                                                   c‑TTTTTCGCGTGTGTCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTATTAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTGCGCACaaa                          <  2:25979/141‑1 (MQ=255)

                                                                                                                     tttttCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTGCGCACAAAg                         <  1:68399/141‑1 (MQ=255)

                                                                                                                      ttttCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTGCGCACAAAGt                        >  1:670554/1‑141 (MQ=255)

                                                                                                                           gCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTGCGCACAAAGTTagca                   <  1:632480/141‑1 (MQ=255)

                                                                                                                           gCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTGCGCACAAAGTTagca                   >  4:234678/1‑141 (MQ=255)

                                                                                                                                 ggCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTGCGCACAAAGTTAGCAGCTTTa             <  2:91200/141‑1 (MQ=255)

                                                                                                                                   ctgatttttATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTGCGCACAAAGTTAGCAGCTTTAGc           >  4:365148‑M2/10‑141 (MQ=255)

                                                                                                                                    tgatttttATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTGCGCACAAAGTTAGCAGCTTTAGCt          <  2:108913‑M2/133‑1 (MQ=255)

                                                                                                                                    tgatttttATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTGCGCACAAAGTTAGCAGCTTTAGCt          <  1:811064‑M2/133‑1 (MQ=255)

                                                                                                                                    tgatttttATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTGCGCACAAAGTTAGCAGCTTTAGCt          <  2:281550‑M2/133‑1 (MQ=255)

                                                                                                                                        ttttATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTGCGCACAAAGTTAGCAGCTTTAGCTACAt      <  2:514284‑M2/137‑1 (MQ=255)

                                                                                                                                         tttATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTGCGCACAAAGTTAGCAGCTTTAGCTACATc     <  1:826900‑M2/138‑1 (MQ=255)

ATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCC‑TTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTGCGCACAAAGTTAGCAGCTTTAGCTACATCACT  >  USA300TCH1516_ALE/2793374‑2793653

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.