| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2600866 | 90 (1.300) | 3 (0.050) | 3/238 | NT | 3.3% | intergenic (‑278/+589) | dapF/USA300HOU_RS13395 | Diaminopimelate epimerase/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2600882 | 92 (1.450) | intergenic (‑294/+573) | dapF/USA300HOU_RS13395 | Diaminopimelate epimerase/hypothetical protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGCTCTATCTAGTAGGTAAGTCATGCTAATTCGCAAAAGCGAAAACCATGGCTCTTATGCAGTTGTTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAGCTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2600716‑2600866‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taagtcatgctTTCCACTTTGCG‑GGTTAGCATGACTTACCTAATAGATAGAGCTATTAGGTTCAGCTTCTAAAAAATTACAGTTTTAGAGGAATACAGTTGCTTGCTTCGCAACAACTGCATAAGAGCCATGGTTTTCGCTTTTGCGAATT < USA300TCH1516_ALE/2600882‑2600743 AGCTCTATCTAGTAGGTAAGTCATGCTAATTCGCAAAAGCGAAAACCATGGCTCTTATGCAGTTGTTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAGCTGAACCTAATAGCTCTATCTATTAGGT > 2:191407/1‑141 CTCTATCTAGTAGGTAAGTCATGCTAATTCGCAAAAGCGAAAACCATGGCTCTTATGCAGTTGTTGCGAAGCAAGCAACTGTATTCCCCTAAAACTGTAATTTTTTCGAAGCTGAACCTAATAGATCTAACTATTAGTTAA > 2:16582/1‑141 TCTATCTAGTAGGTAAGTCATGCGAATTCGCAAAAGCGAAAACCATGGCTCTTATGCAGTTGTTGCGAAGCAAGCAACTGAATTCCTCTAAAACTGTAATTTTTTAGAAGCTGAACCTAATAGCTCTATCTATTAGGTAAG > 2:599734/1‑141 ATCTAGTAGGTACGTCATGCTAATTCGCAAAAGCGAAAACCATGGCTCTTATGCAGTTGTTGCGGAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAGCTGAACCTAATCGCTCTCTCTAATATGTAAGTCg > 1:15775/1‑140 ATCTAGTAGGTAAGTCATGCTAATTCGCAAAAGCGAAAACCCTGGCTCTTATGCAGTTGTTGCGAAGCAACCCACTGTATTCCCCTAAAACTGTAATTTTTCAGAAGCTGGAACTAATACCTCGATATATTGATTAAGTCc > 2:730518/1‑140 TAGTAGGTAAGTCATGCTAATTCGCAAAAGCGAAAACCATGGCTCTTATGCAGTTGTTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAGCTGAACCTAATAGCTCTATCTATTATGTAAGTCgtcc > 2:520397/1‑137 GAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAGCTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTTTCCACTTTGCG‑GGTTAGCATGACTTGCCTAATAGATAGAGCTATTAGGTTCAGCTTCT < 1:599734/141‑1 ATTTTTTAGAAGCTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTTTCCACTTTGCG‑GGTTAGCATGACTTACCTAATAGATAGAGCTATTAGGTTCAGCTTCTAAAAAATTACAGTTTTAGAGGAATACAGTTGC < 2:392057/141‑1 GAAGCTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTACCTAATAGATAGAGCTATTAGGTTCAGCTTCTAAAAAATTACAGTTTTAGAGGAATACAGTTGCTTGCTTCG < 1:392057/141‑1 AGTCATGCTTTCCACTTTGCG‑GGTTAGCATGACTTACCTAATAGATAGAGCTATTAGGTTCAGCTTCTAAAAAATTACAGTTTTAGAGGAATACAGTTGCTTGCTTCGCAACAACTGCATAAGAGCCATGGTTTTCGCTTT < 2:62130/141‑1 ATGCTTTCCACTTTGCG‑GGTTAGCATGACTTACCTAATAGATAGAGCTATTAGGTTCAGCTTCTAAAAAATTACAGTTTTAGAGGAATACAGTTGCTTGCTTCGCAACAACTGCATAAGTGCCATGGTTTTCGCTTTTGCG < 2:573124/141‑1 GCTTTCCACTTTGCG‑GGTTAGCATGACTTACCTAATGGATAGAGCTTTTAGGTTCAGCTTCTAAAAAATTACAGTTTTCGAGGAATACAGGTGCTTGCTTAGCAACAACTGCATAAGAGCCAGTGTTTTCTCTGTTGCGAt > 2:211291/1‑140 GCTTTCCACTTTGCG‑GGTTAGCATGACTTACCTAATAGATAGAGCTATTAGGTTCAGCTTCTAAAAAATTACAGTTTTAGAGGAATACAGTTGCTTGCTTCGCAACATCTGCATAAGAGCCATGGTTTTCGCTTTTGCGAA < 2:552330/141‑1 GCTTTCCACTTTGCG‑GGTTAGCATGACTTACCTAATAGATAGAGCTATTAGGTTCAGCTTCTAAAAAATTACAGTTTTAGAGGAATACAGTTGCTTGCTTCGCAACAACTGCATAAGAGCCATGGTTTTCGCTTTTGCGAA < 1:651345/141‑1 CTTTCCACTTTGCG‑GGTTAGCATGACTTACCTAATAGATAGAGCTATTAGGTTCAGCTTCTAAAAAATTACAGTTTTAGAGGAATACAGTTGCTTGCTTCGCAACAACTGCATAAGAGCCATGGTTTTCGCTTTTGCGAAT < 1:755140/141‑1 CTTTCCACTTTGCG‑GGTTAGCATGACTTACCTAATAGATAGAGCTATTAGGTTCAGCTTCTAAAAAATTACAGTTTTAGAGGAATACAGTTGCTTGCTTCGCAACAACTGCATAAGAGCCATGGTTTTCGCTTTTGCGAAT > 1:707507/1‑141 TTTCCACTTTGCG‑GGTTAGCATGACTTACCTAATAGATAGAGCTATTAGGTTCAGCTTCTAAAAAATTACAGTTTTAGAGGAATACAGTTGCTTGCTTCGCAACAACTGCATAAGAGCCATGGTTTTCGCTTTTGCGAATT < 2:148684/141‑1 AGCTCTATCTAGTAGGTAAGTCATGCTAATTCGCAAAAGCGAAAACCATGGCTCTTATGCAGTTGTTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAGCTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2600716‑2600866‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taagtcatgctTTCCACTTTGCG‑GGTTAGCATGACTTACCTAATAGATAGAGCTATTAGGTTCAGCTTCTAAAAAATTACAGTTTTAGAGGAATACAGTTGCTTGCTTCGCAACAACTGCATAAGAGCCATGGTTTTCGCTTTTGCGAATT < USA300TCH1516_ALE/2600882‑2600743 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |