BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2600866	90 (1.300)	3 (0.050)	3/238	NT	3.3%	intergenic (‑278/+589)	dapF/USA300HOU_RS13395	Diaminopimelate epimerase/hypothetical protein
*	?	USA300TCH1516_ALE	= 2600882	92 (1.450)	3 (0.050)	3/238	NT	3.3%	intergenic (‑294/+573)	dapF/USA300HOU_RS13395	Diaminopimelate epimerase/hypothetical protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 129 total aligned reads displayed.

GTAGGTAAGTCATGCTAATTCGCAAAAGCGAAAACCATGGCTCTTATGCAGTTGTTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCGTAAACCTTATTTAAAGTTGCTTCTTGTGGCTCTACAAGCGAATGCAGTTGTCCGTTAACTACATTCACTTAGATGCTTTTAC  >  USA300TCH1516_ALE/2600727‑2601005

gtagGTAAGTCATGCTAATTCGCAAAAGCGAAAACCATGGCTCTTATGCAGTTGTTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTGGTTAGGAT‑CTGAACGTAATCGCGAAATCTATTAGGTAAGTCATGCTa                                                                                                                                             >  1:317098/1‑141 (MQ=21)

ggtggTAATTCATACTTGTTCCCAAAAGTCAAAACCATGGCTCTTATGCAGTTGTTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTTAACCTAATAGCTCTATCTATTCGGTGAGTCATGCTa                                                                                                                                             <  2:567199/138‑1 (MQ=17)

     tAAGTCATGCTAATTCGCAAAAGCGAAAACCATGGCTCTTATGCAGTTGTTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAAcc‑cc                                                                                                                                       >  1:393034/1‑140 (MQ=255)

     tAAGTCATGCTAATTCGCAAAAGCGAAAACCATGGCTCTTATGCAGTTGTTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCCATTAGGTAAGTCCTGCTAACC‑Cg                                                                                                                                       >  1:99517/1‑141 (MQ=255)

     tAAGTCATGCTAATTCGCAAAAGCGAAAACCATGGCTCTTATGCAGTTGTTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGT‑ACTCCAAAGATGCCATAACCTACTAGCTGTATCATTTAGGTAAGTCATGCTAACC‑Cg                                                                                                                                       >  1:819200/1‑141 (MQ=21)

       aGTCATGCTAATTCGCAAAAGCGAAAACCATGGCTCTTATGCAGTTGTTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCa                                                                                                                                     >  1:674771/1‑141 (MQ=255)

        gTCATGCTAATTCGCAAAAGCGAAAACCATGGCTCTTATGCAGTTGTTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTACTTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCaa                                                                                                                                    <  1:786298/141‑1 (MQ=255)

        gTCATGCTAATTCGCAAAAGCGAAAACCATGGCTCTTATGCAGTTGTTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCaa                                                                                                                                    >  1:138387/1‑141 (MQ=255)

         tCATGCTAATTCGCAAGAGCGAAAACCATGGCTCTTATGCAGTTGTTGCGAAGCAAGCAACTGTGTTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCaaa                                                                                                                                   >  1:415070/1‑141 (MQ=255)

         tCATGCTAATTCGCAAAAGCGAAAACCATGGCTCTTATGCAGTTGTTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCaaa                                                                                                                                   <  1:560606/141‑1 (MQ=255)

         tCATGCTAATTCGCAAAAGCGAAAACCATGGCTCTTATGCAGGTGTTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCaaa                                                                                                                                   >  1:414738/1‑141 (MQ=255)

          cATGCGAATTCGAACAAGCCAAAACCATGGCTCTTATGCAGTTGTTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CAGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAg                                                                                                                                  <  2:542475/141‑1 (MQ=18)

            tGCTAATTCGCAAAAGCGAAAACCATGGCTCTTATGCAGGGTGTGCGAAGATAACAAATGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTg                                                                                                                                >  1:827277/1‑141 (MQ=18)

             gCTAATTCGCAAAAGCGAAAACCATGGCTCTTATGCAGTTGTTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTCTTAGGTACGCCATGCTAACC‑CGCAAAGTgg                                                                                                                               >  1:805825/1‑141 (MQ=255)

             gCTAATTCGCAAAAGCGAAAACCATGGCTCTTATGCAGTTCTTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAGCC‑CGCAAAGTgg                                                                                                                               <  1:592356/141‑1 (MQ=255)

             gCTAATTCGCAAAAGCGAAAACCAAGGCTCTTATGCAGTTGTTGCGAAGCAAGCAACTGTATTCGTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTgg                                                                                                                               <  2:341927/141‑1 (MQ=255)

              ctcaTTCGCAAAAGCAAAAACCATGGCTCTTATGCAGTTGTTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGa                                                                                                                              <  2:741040/138‑1 (MQ=255)

               tAATTCGCAAAAGCGAAAACCATGGCGCTTATGCAGTTGTTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGaa                                                                                                                             <  1:77740/141‑1 (MQ=255)

                aaTTCGCAAAAGCGAAAACCATGGCTCTTATGCAGTTGTTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAa                                                                                                                            <  2:148684‑M2/141‑2 (MQ=255)

                 aTTCGCAAAAGCGAAAACCATGGCTCTTATGCAGTTGTTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAag                                                                                                                           <  1:755140‑M2/141‑3 (MQ=255)

                 aTTCGCAAAAGCGAAAACCATGGCTCTTATGCAGTTGTTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAag                                                                                                                           >  1:707507‑M2/1‑139 (MQ=255)

                  ttCGCAAAAGCGAAAACCATGGCTCTTATGCAGTTGTTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAagc                                                                                                                          <  1:651345‑M2/141‑4 (MQ=255)

                    cGCAAAAGCGAAAACCATGGCACTTATGCAGTTGTTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAagcat                                                                                                                        <  2:573124‑M2/141‑6 (MQ=255)

                               aaaCCATGGCTCTTATGCAGTTGTTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACCTAGTAAt                                                                                                             >  1:351936/1‑141 (MQ=255)

                                   tattgCTCTTATGCAGTTGTTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGgt                                                                                                         <  2:360578/137‑1 (MQ=255)

                                   cATGGCTCTTATGCAGTTGTTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATGGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGgt                                                                                                         <  1:241414/141‑1 (MQ=255)

                                   cATGGCTCTTATGCAGTTGTTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGgt                                                                                                         <  2:206203/141‑1 (MQ=255)

                                           ttATGCAGTTGTTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTAt                                                                                                 <  2:229565/141‑1 (MQ=255)

                                               gCAGTTGTTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCaaa                                                                                             <  2:579246/141‑1 (MQ=255)

                                               gCAGTTGTTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCaaa                                                                                             <  1:148684/141‑1 (MQ=255)

                                                 aGTTGTTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAAt                                                                                           <  1:170875/141‑1 (MQ=255)

                                                  gttgttGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATg                                                                                          >  2:146467/1‑141 (MQ=255)

                                                      ttgCGAAGGAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAAc                                                                                      <  2:643803/141‑1 (MQ=255)

                                                      ttgCGAAGCAAGCAACTTTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCCCTGTGAACAGCATGACTTAGTAATCGGTGGTTGTATCAAAATGCAAc                                                                                      <  2:764175/141‑1 (MQ=21)

                                                      ttgCGAAGCAAGCAACTGTATTCCTCTAAAACTGTACTTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAAc                                                                                      >  2:198291/1‑141 (MQ=255)

                                                       tgCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAAcc                                                                                     <  2:571560/141‑1 (MQ=255)

                                                       tgCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAAcc                                                                                     >  2:778994/1‑141 (MQ=255)

                                                       tgCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAAcc                                                                                     >  1:758619/1‑141 (MQ=255)

                                                       tgCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAAcc                                                                                     <  1:40283/141‑1 (MQ=255)

                                                        gCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGCCTTAGTAATCGGTTCTTGTTTACAAATGCAACCg                                                                                    >  2:354159/1‑141 (MQ=25)

                                                        gCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCg                                                                                    >  2:514424/1‑141 (MQ=255)

                                                        gCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCg                                                                                    <  2:106805/141‑1 (MQ=255)

                                                         cGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTTTCCACTTTGCG‑GGTTagcatgacttacctaatagatagagctattaggttcagcttc                                                                                   <  1:392057‑M2/141‑43 (MQ=255)

                                                          gAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTttccactttgcgggttagcatgacttgcctaatagatagagctattaggttcagcttct                                                                                   <  1:599734‑M1/141‑60 (MQ=255)

                                                          gAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCGTa                                                                                  <  1:479297/141‑1 (MQ=255)

                                                                 gcaaCTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAagcatgacttacctaatagatagagctattaggttcagcttctaaaaaat                                                                           <  2:392057‑M2/141‑51 (MQ=255)

                                                                 gcaaCTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCGTAAACCTTa                                                                           >  1:47116/1‑141 (MQ=255)

                                                                    aCTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCCAAATGCAACCGTAAACCTTAttt                                                                        >  2:67247/1‑141 (MQ=255)

                                                                         aTTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTaa                                                                                                                                            <  1:243834/69‑1 (MQ=255)

                                                                          ttCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCGTAAACCTTATTTAAAGtt                                                                  >  2:821094/1‑141 (MQ=255)

                                                                           tCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCGTAAACCTTATTTAAAGTTg                                                                 <  1:23354/141‑1 (MQ=255)

                                                                            ccTCTAAAACTGTAATTTTTTGGAAG‑CTGAACCTAATAGCTCTATCTATTACGTAAGTGATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCGTAAACCTTATTTAAAGTTGc                                                                <  2:552818/141‑1 (MQ=255)

                                                                            ccTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTACTCGGTTGTTGGATCAAAATGCAACCGTAAACCTTATTTAAAGTTGc                                                                <  2:630223/141‑1 (MQ=255)

                                                                              tctAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCGTAAACCTTATTTAAAGTTGctt                                                              <  1:351192/141‑1 (MQ=255)

                                                                                 aaaaCTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCGTAAACCTTATTTAAAGTTGcttctt                                                           <  2:686521/141‑1 (MQ=255)

                                                                                  aaaCTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCGTAAACCTTATTTAAAGTTGCTTCTtg                                                          >  2:83946/1‑141 (MQ=255)

                                                                                  aaaCTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGCAATCGTACGTTTTATCAAAATGCAACCGTAAACCTGATTTAAAGTTGCTTCTtg                                                          >  1:689273/1‑141 (MQ=37)

                                                                                      tGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCGTAAACCTTATTTAAAGTTGCTTCTTGTGGc                                                      <  2:755140/141‑1 (MQ=255)

                                                                                          aTTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTttccactttgcgggttagcatgacttacctaatagatagagctattaggttcagcttctaaaaaattacagttttagaggaatacagttgc                                                   <  2:392057‑M1/141‑92 (MQ=255)

                                                                                             ttttAGAAG‑CTGAACCCTATAGCTCTCTCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCGTAAACCTTATTTAAAGTTGCTTCTTGTGGCTCTACaa                                               <  1:513834/141‑1 (MQ=255)

                                                                                              tttAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCGTAAACCTTATTTAAAGTTGCTTCTTGTGGCTCTACAAg                                              <  2:794281/141‑1 (MQ=255)

                                                                                                  gAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTaacccgcaaagtggaaagcatgacttacctaatagatagagctattaggttcagcttctaaaaaattacagttttagaggaatacagttgcttgcttcg                                           <  1:392057‑M1/141‑100 (MQ=255)

                                                                                                  gAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCGTAAACCTTATTTAAAGTTGCTTCTTGTGGCTCTACAAGCGaa                                          >  1:147860/1‑141 (MQ=255)

                                                                                                   aaG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCGTAAACCTTATTTAAAGTTGCTTCTTGTGGCTCTACAAGCGAAt                                         >  2:112621/1‑141 (MQ=255)

                                                                                                    aG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAAAC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGAAACCGTAAACCTTATTTAGAGTTATAGCTTTGGGCTCTACAAGCGAATg                                        >  1:687837/1‑141 (MQ=38)

                                                                                                     g‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCGTAAACCTTATTTAAAGTTGCTTCTTGTGGCTCTACAAGCGAATGc                                       <  1:514424/141‑1 (MQ=255)

                                                                                                       cTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTTGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCGTAAACCTTATTTAAAGTTGCTTCTTGTGGCTCTACAAGCGAATGCa                                      >  1:706707/1‑141 (MQ=255)

                                                                                                       cTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCGCAAACCTTATTTAAAGTTGCTTCTTGTGGCTCTACAAGCGAATGCa                                      <  1:574574/141‑1 (MQ=255)

                                                                                                        tGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCGTTAACCTTATTTAAAGTTGCTTCTTGTGGCTCTACAAGCGAATGCAg                                     <  2:720434/141‑1 (MQ=255)

                                                                                                        tGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCGTAAACCTTATTTAAAGTTGCTTCTTGTGGATCTAAACGCGAATGCAg                                     <  2:701470/141‑1 (MQ=255)

                                                                                                        tGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGACTGACGCATCGAGCGGTTGTTGTATCAAAATGCAACCGTAAACCTTATTTAAAGTTGCTTCTTGTGGCTCTACAAGCGAATGCAg                                     <  1:608893/141‑1 (MQ=38)

                                                                                                        cgAACCGAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCACCCGTCAACCTTATTTAAAGTTGCTTCTTGTGGCTCTACAAGCGAATGCAg                                     <  2:629872/140‑1 (MQ=255)

                                                                                                            ccTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCGTAAACCTTATTTAAAGTTGCTTCTTGTGGCTCTACAAGCGAATGCAGTTGt                                 <  1:66689/141‑1 (MQ=255)

                                                                                                               aagaGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCGTAAACCTTATTTAAAGTTGCTTCTTGTGGCTCTACAAGCGAATGCAGTTGTCCg                              >  2:728724/4‑141 (MQ=255)

                                                                                                                  aGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCGTAAACCTTATTTAAAGTTGCTTCTTGTGGCTCTACAAGCGAATGCAGTTGTCCGTTa                           <  1:62130/141‑1 (MQ=255)

                                                                                                                    ctctATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCGTAAACCTTATTTAAAGTTGCTTCTTGTGGCTCTACAAGCGAATGCAGTTGTCCGTTAAc                         <  1:342883/141‑1 (MQ=255)

                                                                                                                       tatctatTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGAATTCGAATTCTTTTGTTGTATGATTAGTGTAGCGTAAACCTAATTTAAAGGTGGTGCTTTTTGCTCTACAAGCGAATGCAGTTGTCCGTTAACTAc                      >  1:612600/1‑141 (MQ=255)

                                                                                                                           tatTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCGTAAACCTTATTTAAAGTTGCTTCTTGTGGGTCTACAAGCGAATGCAGGTGTCCGTTAACTACATTc                  >  2:23643/1‑141 (MQ=255)

                                                                                                                            atTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTCATCGGTTGTTGTATCAAAATGCAACCGTAAACCTTATTTAAAGTTGCTTCTTGTGGCTCTACAAGCGAATGCAGTTGTACGTTAACTACATTCa                 >  2:1707/1‑141 (MQ=255)

                                                                                                                                 gTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCGTAAACCTTATTTAAAGTTGCTTCTTGTGGCTCTACAAGCGAATGCAGTTGTCCGTTAACTACATTCACTTAg            <  2:400646/141‑1 (MQ=255)

                                                                                                                                    aGTCATGCTttccactttgcgggttagcatgacttacctaatagatagagctattaggttcagcttctaaaaaattacagttttagaggaatacagttgcttgcttcgcaacaactgcataagagccatggttttcgcttt          <  2:62130‑M1/141‑133 (MQ=255)

                                                                                                                                    aGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCGTAAACCTTATTTAAAGTTGCTTCTTGTGGCTCTACAAGCGAATGCAGTTGTCCGTTAACTACATTCACTTAGATg         >  1:70010/1‑141 (MQ=255)

                                                                                                                                     gTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCGTAAACCTTATTTAAAGTTGCTTCTTGTGGCTCTACAAGCGAATGCAGTTGTCCGTTAACTACATTCACTTAGATGc        >  1:705956/1‑141 (MQ=255)

                                                                                                                                      tCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCGTAAACCTTATTTAAAGTTGCTTCTTGTGGCTCTACAAGCGAATGCAGTTGTCCGTTAACTACATTCACTTAGATGCt       <  2:651345/141‑1 (MQ=255)

                                                                                                                                        aTGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCGTAAACCTTATTTAAAGTTGCTTCTTGTGGCTCTACAAGCGAATGCAGTTGTCCGTTAACTACATTCACTTAGATGCttt     >  1:773879/1‑141 (MQ=255)

                                                                                                                                        aTGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCGTAAACCTTATTTAAAGTTGCTTCTTGTGGCTCTACAAGCGAATGCAGTTGTCCGTTAACTACATTCACTTAGATGCttt     <  2:135462/141‑1 (MQ=255)

                                                                                                                                        aTGCGAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCGTAAACCTTATTTAAAGTTGCTTCTTGTGGCTCTACAAGCGAATGCAGTTGTCCGTTAACTACATTCCCTTAGATGCttt     >  2:811596/1‑141 (MQ=255)

                                                                                                                                         tGCTAATC‑CGCAAGGTTGAGCTCATGACTGAGTGATCGTTTGTTGTATCAAAGTGCAACCGTAAACTTTATTTAAATTTGCTTCTTGTGGCTCTACAAGCGAAGGCAGTTGTCCGTTAACTACATTCACTTAGATGCtttt    <  2:376571/141‑1 (MQ=255)

                                                                                                                                         tGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCGTAAACCTTATTTAAAGTTGCTTCTTGTGGCTCTACAAGCGAATGCAGTTGTCCGTTAACTACATTCACTTAGATGCtttt    >  1:87805/1‑141 (MQ=255)

                                                                                                                                         tGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCGTAAACCTTATTTAAAGTTGCTTCTTGTGGCTCTACAAGCGAATGCAGTTGTCCGTTAACTACATTCACTTAGATGCtttt    >  1:482894/1‑141 (MQ=255)

                                                                                                                                         tGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCGTAAACCTTATTTAAAGTTGCTTCTTGTGGCTCTACAAGCGAATGCAATGGTTTTTTAACGACATTCACTTAGATGCtttt    <  1:405597/141‑1 (MQ=255)

                                                                                                                                          gCTttccactttgcgggttagcatgacttacctaatggatagagcttttaggttcagcttctaaaaaattacagttttcgaggaatacaggtgcttgcttagcaacaactgcataagagccagtgttttctctgttgcgat    >  2:211291‑M1/1‑3 (MQ=255)

                                                                                                                                          gCTttccactttgcgggttagcatgacttacctaatagatagagctattaggttcagcttctaaaaaattacagttttagaggaatacagttgcttgcttcgcaacatctgcataagagccatggttttcgcttttgcgaa    <  2:552330‑M1/141‑139 (MQ=255)

                                                                                                                                          gCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCGTAAACCTTATTTAAAGTTGCTTCTTGTGGCTCTACAAGCGAATGCAGTTGTCCGTTAACTACATTCACTTAGATGCTTTTa   <  1:510538/141‑1 (MQ=255)

                                                                                                                                          gCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCGTAAACCTTATTTAAAGTTGCTTCTTGTGGCTCTACAAGCGAATGCAGTTGTCCGTTAACTACATTCACTTAGATGAttttt   >  2:26381/1‑140 (MQ=255)

                                                                                                                                           cTttccactttgcgggttagcatgacttacctaatagatagagctattaggttcagcttctaaaaaattacagttttagaggaatacagttgcttgcttcgcaacaactgcataagagccatggttttcgcttttgcgaat   <  1:755140‑M1/141‑140 (MQ=255)

                                                                                                                                           cTttccactttgcgggttagcatgacttacctaatagatagagctattaggttcagcttctaaaaaattacagttttagaggaatacagttgcttgcttcgcaacaactgcataagagccatggttttcgcttttgcgaat   >  1:707507‑M1/1‑2 (MQ=255)

                                                                                                                                           cTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCGTAAACCTTATTTAAAGTTGCTTCTTGTGGCTCTACAAGCGAATGCAGTTGTCCGTTAACTACATTCACTTAGATGCTTTTAc  <  1:625528/141‑1 (MQ=255)

                                                                                                                                           cTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCGTAAACCTTATTTAAAGTTGCTTCTTGTGGCTCTACAAGCGAATGCAGTTGTCCGTTAACTACATTCACTTAGATGCTTTTAc  >  2:557649/1‑141 (MQ=255)

                                                                                                                                            tttccactttgcgggttagcatgacttacctaatagatagagctattaggttcagcttctaaaaaattacagttttagaggaatacagttgcttgcttcgcaacaactgcataagagccatggttttcgcttttgcgaatt  <  2:148684‑M1/141‑141 (MQ=255)

GTAGGTAAGTCATGCTAATTCGCAAAAGCGAAAACCATGGCTCTTATGCAGTTGTTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTTTAGAAG‑CTGAACCTAATAGCTCTATCTATTAGGTAAGTCATGCTAACC‑CGCAAAGTGGAAAGCATGACTTAGTAATCGGTTGTTGTATCAAAATGCAACCGTAAACCTTATTTAAAGTTGCTTCTTGTGGCTCTACAAGCGAATGCAGTTGTCCGTTAACTACATTCACTTAGATGCTTTTAC  >  USA300TCH1516_ALE/2600727‑2601005

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.