| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1606572 = | 93 (0.910) | 4 (0.040) | 4/282 | 8.1 | 4.1% | coding (511/1155 nt) | USA300TCH1516_01489 | hypothetical protein |
| ? | USA300TCH1516_ALE | 1606595 = | 99 (1.010) | coding (488/1155 nt) | USA300TCH1516_01489 | hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCTGATTTTGCATTGGATGCATTAAAAGAAAGAATTAATGAGTTGTTTAAAGGTATAAAATCTTTTATAGAAAAAGTGTATGATAGTATAGATAATGAAATTTTAGAAATTTTCAAAAATATAGATCACGACTTCAGAGATGGAGTATCTGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1606725‑1606572‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctgaagTC‑GTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATCCAATGCAAAATCAGGTAATAAGTGTTTAA > USA300TCH1516_ALE/1606595‑1606739 CCTGATTTTGCATTGGATGCATTAAAAGAAAGAATTAATGAGTTGTTTAAAGGTATAAAATCTTTTATAGAACAAGTGTATGATAGTATAGATAATGAAATTTTAGAAATTTTCAAAAATATATATCACGACTTCAGAGATGGAGTATC > 1:398233/1‑149CCTGATTTTGCATTGGATGCATTAAAAGAAAGAATTAATGAGTTGTTTAAAGGTATAAAATCTTTTATAGAAAAAGTGTATGATAGTATAGATAATGAAATTTTAGAAATTTTCAAAAATATAGATCACGACTTCAGAGATGGAGTATC > 2:771592/1‑149 CTGATTTTGCATTGGATGCATTAAAAGAAAGAATTAATGAGTTGTTTAAAGGTATAAAATCTTTTATAGAAAAAGTGTATGATAGTATAGATAATGAAATTTTAGAGATTTTCAAAAATATGGGTCACGTCTTCAGAGATGGGGTATCT > 1:302589/1‑149 CTGATTTTGCATTGGATGCATTAAAAGAAAGAATTAATGAGTTGTTTAAAGGTATAAAATCTTTTATAGAAAAAGTGTATGATAGTATAGATAATGAAATTTTAGAAATTTTCAAAGATATAGATCACGACTTCAGAGATGGAGTATCT < 2:242054/149‑1 TGATTTTGCATTGGATGCATTAAAAGAAAGAATTAATGAGTTGTTTAAAGGTATAAAATCTTTTATAGAAAAAGTGTATGATAGTATAGATAATGAAATTTTAGAAATTTTCAAAAATATAGATCACGACTTCAGAGATGGAGTATCTG > 2:812401/1‑149 TGATTTTGCATTGGATGCATTAAAAGAAAGAATTAATGAGTTGTTTAAAGGTATAAAATCTTTTATAGAAAAAGTGTATGATAGTATAGATAATGAAATTTTAGAAATTTTCAAAAATATAGATCACGACTTCAGAGATGGAGTATCTG > 1:128071/1‑149 GATTTTGCATTGGATGCATTAAAAGAAAGAATTAATGAGTTGTTTAAAGGTATAAAATCTTTTATAGAAAAAGTGTATGATAGTATAGATAATGAAATTTTAGAAATTTTCAAAAATATAGATCACGACTTCAGAGATGGAGTATCTGA > 1:1072544/1‑149 ATTTTGCATTGGATGCATTAAAAGAAAGAATTAATGAGTTGTTTAAAGGTATAAAATCTTTTATAGAAAAAGTGTATGATAGTATAGATAATGAAATTTTAGAAATTTTCAAAAATATAGATCACGACTTCAGAGATGGAGTATCTGAA < 1:284963/149‑1 ATTTTGCATTGGATGCATTAAAAGAAAGAATTAATGAGTTGTTTAAAGGTATAAAATCTTTTATAGAAAAAGTGTATGATAGTATAGATAATGAAATTTTAGAAATTTTCAAAAATATAGATCACGACTTCAGAGATGGAGTATCTGAA > 1:416941/1‑149 AAAAGAAAGAATTAATGAGTTGTTTAAAGGTATAAAATCTTTTATAGAAAAAGTGTATGATAGTATAGATGATGAAATTTTAGAAATTTACATAAATATAGAGCACGACTTAAGAAATGAAGTATCT‑AAGTCTGTGATCTAGATTTTTa > 1:847067/1‑148 TAATGAGTTGTTTAAAGGTATAAAATCTTTTATAGAAAAAGTGTATGATGGTATAGATAATGAAATTTTAGAACTTTTCAAAAATATAGATCAAGACTTCAGAGATGAAGAAACTGAAGTA‑GTGATCTAGATTTTTGAAAATATATAAA > 1:842527/1‑149 TTTAGAAATTTTCAAAAATATAGATCACGACTTCAGAGATGGAGTATCTGAATTC‑GTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTA < 2:842527/149‑1 CAAAAATATAGATCACGACTTCAGAGATGGAGTATCTGAAGTC‑GTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTT < 2:847067/149‑1 CTGAAGTC‑GTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATTCAATGCAAAATCAGGTAATTAGTGTTT > 2:772529/1‑149 CTGAAGTC‑GTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATCCAATGCAAAATCAGGTAATAAGTGATT > 1:113161/1‑149 CTGAAGTC‑GTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATGTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATCCAATGCAAAATCAGGTAATAAGTGTTT > 1:113257/1‑149 GAAGTC‑GTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATCCAATGCAAAATCAGGTAATAAGTGTTTAA > 1:1109527/1‑149 CCTGATTTTGCATTGGATGCATTAAAAGAAAGAATTAATGAGTTGTTTAAAGGTATAAAATCTTTTATAGAAAAAGTGTATGATAGTATAGATAATGAAATTTTAGAAATTTTCAAAAATATAGATCACGACTTCAGAGATGGAGTATCTGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1606725‑1606572‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctgaagTC‑GTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATCCAATGCAAAATCAGGTAATAAGTGTTTAA > USA300TCH1516_ALE/1606595‑1606739 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |