New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 1606572 =93 (0.910)4 (0.040) 4/282 8.1 4.1% coding (511/1155 nt) USA300TCH1516_01489 hypothetical protein
?USA300TCH1516_ALE 1606595 = 99 (1.010)coding (488/1155 nt) USA300TCH1516_01489 hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 103 total aligned reads displayed.

AAATTGTTGCATCTTGTTGTTTCATAATACTTCTAATATCTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATCCAATGCAAAATCAGGTAATAAGTGTTTAA  >  USA300TCH1516_ALE/1606449‑1606739
                                                                                                                                                  |                                                                                                                                                
aaaTTGTTGCATCTTGTTGTTTCATAATACTTCTAATATCTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCACATGTTTCATCATTTCTTCAGATAATCCATATCTGAAATCg                                                                                                                                                >  2:175333/1‑149 (MQ=255)
  aTTGTTGCATCTTGTTGTTTCATAATACTTCTAATATCTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTg                                                                                                                                              >  1:955717/1‑149 (MQ=255)
     tttgCATCTTGGTGTTTCATAATACTTCTAATATCTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCACATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATc                                                                                                                                           <  2:209413/148‑1 (MQ=255)
      ttgCATCTTGTTGTTTCATAATACTTCTAATATCTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCt                                                                                                                                          <  2:1092551/149‑1 (MQ=255)
          aTCTTGTTGTTTCACAAAACTTCTAATATCTGCAATTTGACTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTatat                                                                                                                                      >  1:818230/1‑149 (MQ=255)
               gttgttTCATAATACTTCTAATATCTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTg                                                                                                                                 >  2:859355/1‑149 (MQ=255)
                 tgttTCATAATACTTCTAATATCTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGaa                                                                                                                               >  2:857386/1‑149 (MQ=255)
                   tttCATAATACTTCTAATATCTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGaaaa                                                                                                                             >  1:201344/1‑149 (MQ=255)
                       ataataCTTCTAATATCTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTc                                                                                                                         <  1:734390/149‑1 (MQ=255)
                            aCTTCTAATATCTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAATTGTTTAATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTaaaa                                                                                                                    >  2:834544/1‑149 (MQ=255)
                              ttCGAATGTGTGCAATTGGCCTACTATAACTGTTATGTCGATGTTTTATTGAGTCTATATTCCGTTTCACTACTTTCAACTGTTTCAGCATGTTTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTTAAAATTTCTAAAAtt                                                                                                                  <  2:985642/149‑1 (MQ=255)
                              tgcTAATATGTGGCTTTTGTCTGCCTTAAATATCATTNTGATTTTTTATTTTGTCTATATTCTGTTTCACTTCTTTCATATGTTTCATCATTTCTTCAGATAATCCTTCTCGGAAGTCGTGATTTGTAATTTTGAAAATTTCTAAAAtt                                                                                                                  <  2:245786/147‑1 (MQ=255)
                                cTAATATCTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTc                                                                                                                <  2:860619/149‑1 (MQ=255)
                                    tatCTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTa                                                                                                            <  1:726064/149‑1 (MQ=255)
                                      tCTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATAATCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATc                                                                                                          >  1:627911/1‑149 (MQ=255)
                                       cTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAATTTTCTAAAATTTCATTAttt                                                                                                         >  2:244180/1‑147 (MQ=255)
                                         gCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCtat                                                                                                       >  1:1104946/1‑149 (MQ=255)
                                         gCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCtat                                                                                                       >  1:1075442/1‑149 (MQ=255)
                                          cAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCtata                                                                                                      <  2:376058/149‑1 (MQ=255)
                                          cAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCtata                                                                                                      <  1:609215/149‑1 (MQ=255)
                                             tttGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGATAATTTCTAAAATTTCATTATCTATACTa                                                                                                   >  2:265987/1‑149 (MQ=255)
                                                gCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCa                                                                                                <  2:406164/149‑1 (MQ=255)
                                                    aCCATAAATATCATTTTGATTTTTTATTTTGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATaca                                                                                            <  2:1002155/149‑1 (MQ=255)
                                                    aCCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATaca                                                                                            >  2:44885/1‑149 (MQ=255)
                                                        tAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCTTTTGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACttt                                                                                        <  1:487435/149‑1 (MQ=255)
                                                        tAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACttt                                                                                        <  1:450633/149‑1 (MQ=255)
                                                           atatCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTc                                                                                     <  2:201344/149‑1 (MQ=255)
                                                            tatCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCt                                                                                    <  1:1020157/149‑1 (MQ=255)
                                                             atCATTTTGATTTTTTATTTGGTCGATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTTAAAATTTCTAAAATTTCATTATCTATACTATCATAAATTTTTTCtt                                                                                   >  2:381772/1‑148 (MQ=255)
                                                              tCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCtat                                                                                  <  1:115271/149‑1 (MQ=255)
                                                                 ttttGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATaaa                                                                               <  2:818230/149‑1 (MQ=255)
                                                                 ttttGATTGTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATaaa                                                                               <  2:181685/149‑1 (MQ=255)
                                                                   ttGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGCAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATaaaaa                                                                             >  2:274875/1‑148 (MQ=255)
                                                                     gATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTTATTTTTTCTTAAAGTTCATTATCTATACTATCATACACTTTTTCTATAAAAgct                                                                           >  2:880896/1‑147 (MQ=255)
                                                                     gATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGAt                                                                           >  1:520762/1‑149 (MQ=255)
                                                                          tttATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTtat                                                                      <  1:289495/149‑1 (MQ=255)
                                                                           ttATTTGGTCTATATTCTGTTGCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTAAAAATTTCTATAATTTCCTTAGCGTTACTATCATACACTTTTTCTATAAAAGATTTtatt                                                                     >  2:233695/1‑148 (MQ=255)
                                                                           ttAGTTGGTTTATCGGCTGTTTCACTACTTTCGAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATGCTATCATACTCTTTTTCTATAAAAGATTTtata                                                                     <  2:251873/149‑1 (MQ=255)
                                                                            tATTTTGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATAc                                                                    <  1:1076576/149‑1 (MQ=255)
                                                                            tATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATAc                                                                    >  1:771592/1‑149 (MQ=255)
                                                                             aTTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATAcc                                                                   >  2:837025/1‑149 (MQ=255)
                                                                             aTTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATAcc                                                                   >  2:216369/1‑149 (MQ=255)
                                                                              tttGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCt                                                                  <  1:1033795/149‑1 (MQ=255)
                                                                                 ggTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGCGCTATATTTTTGAAAATATCTCAAATTTCATTATAGATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTa                                                               >  2:833962/1‑149 (MQ=255)
                                                                                 ggTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTa                                                               >  2:849043/1‑149 (MQ=255)
                                                                                    cTATATTCTGTTTCACTACTTTCAAATGTTTCGTCGGGTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAaac                                                            >  2:1072544/1‑149 (MQ=255)
                                                                                       tgttCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAaacaac                                                         <  1:84887/147‑1 (MQ=255)
                                                                                         ttCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCTGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTc                                                       <  2:537133/149‑1 (MQ=255)
                                                                                          tCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAGGATTTTATTCCTTTAAACTACTCa                                                      >  1:308906/1‑149 (MQ=255)
                                                                                           cTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCAt                                                     <  2:600278/149‑1 (MQ=255)
                                                                                           cTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCAt                                                     <  2:396660/149‑1 (MQ=255)
                                                                                           cTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCAt                                                     <  2:672314/149‑1 (MQ=255)
                                                                                            tGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCAtt                                                    >  2:548402/1‑149 (MQ=255)
                                                                                            tGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCAtt                                                    >  1:1019975/1‑149 (MQ=255)
                                                                                            tGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACACAta                                                    >  2:387788/1‑148 (MQ=255)
                                                                                            tGTTTCACTACTTTCAAATGTTTCATCATTTCTATAGATACTCCATCTCTGAAGTCGTGACATATATTTTTGAAAATTTCTAAAATTTCATTATCTCTACTATCATAAACTTTTTCTTTAAAAGATTTTTTACCTTTAAACAACttttt                                                    >  2:683842/1‑145 (MQ=255)
                                                                                             gTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCCTTa                                                   >  2:799583/1‑149 (MQ=255)
                                                                                             gTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACGCATTa                                                   >  2:809908/1‑149 (MQ=255)
                                                                                                     actTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAAttctttc                                           <  2:580360/149‑1 (MQ=255)
                                                                                                       tttCAAATGTTTCTTCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATATAAGATTTTATACCTTTAAACAACTCATTAATtctttctt                                         <  2:373709/149‑1 (MQ=255)
                                                                                                       tttCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATtctttctt                                         <  1:78156/149‑1 (MQ=255)
                                                                                                       tttCAAATGGTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTAGATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATtctttctt                                         <  2:31642/149‑1 (MQ=255)
                                                                                                       tttCAAAGGTCTCATCATTTCTTCAGATACGCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATAAATTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATtctttctt                                         <  2:5700/149‑1 (MQ=255)
                                                                                                        ttCAGATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTctttcttt                                        <  1:223603/149‑1 (MQ=255)
                                                                                                         tCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCtttt                                       <  2:107365/149‑1 (MQ=255)
                                                                                                          cAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTa                                      <  1:593664/149‑1 (MQ=255)
                                                                                                          cAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTa                                      <  1:466130/149‑1 (MQ=255)
                                                                                                          cAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATGAATTCTTTCTTTTa                                      >  2:174874/1‑149 (MQ=255)
                                                                                                              tGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGc                                  <  1:638853/149‑1 (MQ=255)
                                                                                                                 ttCATCATTTCTTCAGATTCTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATc                               <  1:110861/149‑1 (MQ=255)
                                                                                                                 ttCATAATATCTGCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATc                               <  2:668354/149‑1 (MQ=255)
                                                                                                                   catcatTTCTTCAGATACTCCATCTCTGTAGTCGCGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATCCa                             <  2:726806/149‑1 (MQ=255)
                                                                                                                   catcatTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATCCa                             >  2:812698/1‑149 (MQ=255)
                                                                                                                   catcatTTCTTCAGATAATACATATCAGAATTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATCCa                             >  2:353386/1‑149 (MQ=255)
                                                                                                                    atcatTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAACTTTCTAAAATTTCCTTAACTATACTATCATACACTTTTTCTATAAAAGATTTCATACCTTTAAACAACTCATTAATTCCTTCTTTTAATGCATCCaa                            >  1:795001/1‑149 (MQ=255)
                                                                                                                    atcatTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATCCaa                            >  1:862302/1‑149 (MQ=255)
                                                                                                                    atcatTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATGTAATTATCTATACTATCAGACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTAATTAATTCTTTCTGTTAATGCATCCaa                            >  1:794999/1‑149 (MQ=255)
                                                                                                                         ttcttcAGATGCTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTACTGCATCCAATGCaa                       <  2:963932/149‑1 (MQ=255)
                                                                                                                            ttcAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATCCAATGCAAAAt                    <  1:416941/149‑1 (MQ=255)
                                                                                                                            ttcAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATCCAATGCAAAAt                    >  1:284963/1‑149 (MQ=255)
                                                                                                                             tcAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATCCAATGCAAAATc                   <  1:1072544/149‑1 (MQ=255)
                                                                                                                              cAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATCCAATGCAAAATCa                  <  2:812401/149‑1 (MQ=255)
                                                                                                                              cAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATCCAATGCAAAATCa                  <  1:128071/149‑1 (MQ=255)
                                                                                                                               aGATACTCCATCTCTGAAGTCGTGATCTATATCTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATCCAATGCAAAATCAg                 >  2:242054/1‑149 (MQ=255)
                                                                                                                               aGATACCCCATCTCTGAAGACGTGACCCATATTTTTGAAAATCTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATCCAATGCAAAATCAg                 <  1:302589/149‑1 (MQ=255)
                                                                                                                                gATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATCCAATGCAAAATCAgg                <  2:771592/149‑1 (MQ=255)
                                                                                                                                gATACTCCATCTCTGAAGTCGTGATATATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTGTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATCCAATGCAAAATCAgg                <  1:398233/149‑1 (MQ=255)
                                                                                                                                   ccTCCATCTTGGAAGTCGGCATCCAGACTTTTGAAAATTGCTAAAATGTCATTATCTATACTATCATACACTTTTTCTAGAAAAGATTGTATACCTTTAAACATCTCATTAATTCTTTCTTGTAATGCATCCAATGCAAAATCAGGtaa             <  2:82929/148‑1 (MQ=255)
                                                                                                                                   aCTCCATCGCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATGATCTAGACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATCCAATGCAAAATCAGGtaa             <  1:149443/149‑1 (MQ=255)
                                                                                                                                    cTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGAATCCAATGCAAAATCAGGtaat            >  1:421001/1‑149 (MQ=255)
                                                                                                                                      ccATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATCCAATGCAAAATCAGGtaataa          >  1:413136/1‑149 (MQ=255)
                                                                                                                                       cATCTCTGAAGTCGTGATCTATATGTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATCCAATGCAAAATCAGGTAATAAg         >  1:666813/1‑149 (MQ=255)
                                                                                                                                         tctcTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATCCAATGCAAAATCAGGTAATAAgtg       >  1:995978/1‑149 (MQ=255)
                                                                                                                                          ctctGAAGTCGTGATCTATATTTTTGAAGATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATCCAATGCAAAATCAGGTAATAAgtgt      <  1:181879/149‑1 (MQ=255)
                                                                                                                                          ctctGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATCCAATGCAAAATCAGGTAATAAgtgt      <  1:384837/149‑1 (MQ=255)
                                                                                                                                          ctctGAAGTCGTGATATATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATCCAATGCAAAATCAGGTAATAAgtgt      <  1:130179/149‑1 (MQ=255)
                                                                                                                                            ctGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATTCAATGCAAAATCAGGTAATTAGTGttt    >  2:772529/1‑149 (MQ=255)
                                                                                                                                            ctGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATCCAATGCAAAATCAGGTAATAAGTGatt    >  1:113161/1‑149 (MQ=255)
                                                                                                                                            ctGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATGTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATCCAATGCAAAATCAGGTAATAAGTGttt    >  1:113257/1‑149 (MQ=255)
                                                                                                                                              gAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATCCAATGCAAAATCAGGTAATAAGTGTTTaa  >  1:1109527/1‑149 (MQ=255)
                                                                                                                                                  |                                                                                                                                                
AAATTGTTGCATCTTGTTGTTTCATAATACTTCTAATATCTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATCCAATGCAAAATCAGGTAATAAGTGTTTAA  >  USA300TCH1516_ALE/1606449‑1606739

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.