New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1606572 =	93 (0.910)	4 (0.040)	4/282	8.1	4.1%	coding (511/1155 nt)	USA300TCH1516_01489	hypothetical protein
	?	USA300TCH1516_ALE	1606595 =	99 (1.010)					coding (488/1155 nt)	USA300TCH1516_01489	hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AATTAATTTGAAAATTTCCATCTAAAATTGTTGCATCTTGTTGTTTCATAATACTTCTAATATCTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATCCAATGCAA  >  USA300TCH1516_ALE/1606425‑1606718                                                                                                                                                    |                                                                                                                                                   aattaattTGAAAATTTCCATCTAAAATTGTTGCATCTTGTTGTTTCATAATACTTCTAATATCTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATttct                                                                                                                                                   <  1:945527/149‑1 (MQ=255)  attaattTGAAAATTTCCATCTAAAATTGTTGCATCTTGTTGTTTCATAATACTTCTAATATCTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATttctt                                                                                                                                                  <  1:645843/149‑1 (MQ=255)   ttaattTGAAAATTTCCATCTAAAATTGTTGCATCTTGTTGTTTCATAATACTTCTAATATCTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATttcttc                                                                                                                                                 >  1:997100/1‑149 (MQ=255)     aattTGAAAATTTCCATCTAAAATTGTTGCATCTTGTTGTTTCATCATACTTCTAATCTCTGCAATTTGCCTACCATAAATATCATTTTGATTTCTTATTTGCTCCATATTCTGTTTCATTACTTTCAAATGTTTCATCATttctttcg                                                                                                                                               >  2:97927/1‑146 (MQ=255)     aattTGAAAATTTCCATCTAAAATTGTTGCATCTTGTTGTTTCATAATACTTCTAATATCTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTGTTTTGTTTATATTCTTTTTAATTATTTTTTAATGTTTCGTTTTttctttat                                                                                                                                               >  2:97967/1‑146 (MQ=255)     aattTGAAAATTTCCATCTAAAATTGTTGCATCTTGTTGTTTCATAATACTTCTAATATCTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAg                                                                                                                                               >  2:921218/1‑149 (MQ=255)          gAAACTTTCCATCTAAAATTGTTGCATCTTGTTGTTTCATAATACTTCTAATATCTGCAATTTGCCTACCATAAATATCATTTTGCTTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCCACTGTTTCATCATTTCTTCAGATACt                                                                                                                                          >  2:192430/1‑149 (MQ=255)             aaTTTCCATCTAAAATTGTTTCATCTTGTAGTTTCATAATACTTCTAATATCTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCa                                                                                                                                       >  1:580360/1‑149 (MQ=255)                ttCCATCTAAAATTGTTGCATCTTGTTGTTTCATAATACTTCTAATATCTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCTTTTCTTCAGATTCTCCAtct                                                                                                                                    >  2:130179/1‑149 (MQ=255)                ttCCATCTAAAATTGTTGCATCTTGTTGTTTCATAATACTTCTAATATCTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGTTACTCCAtct                                                                                                                                    >  2:384837/1‑149 (MQ=255)                ttCCATCTAAAATTGTTGCATCTTGTTGTTTCATAATACTTCTAATATCTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTAACTACTTTCAAATGTTTCATCATTTCTTCAGATATTCAAtct                                                                                                                                    >  2:181879/1‑149 (MQ=255)                 tCCATCTAAACGTGTTGCATCTTGTTGTTTCATAATAATTTTAATATCTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACGACTTTCACATGTTTCATCATTTCTTCAGATACTCCAtctc                                                                                                                                   <  1:398935/149‑1 (MQ=255)                         aaaTTGTTGCATCTTGTTGTTTCATAATACTTCTAATATCTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCACATGTTTCATCATTTCTTCAGATAATCCATATCTGAAATCg                                                                                                                           >  2:175333/1‑149 (MQ=255)                           aTTGTTGCATCTTGTTGTTTCATAATACTTCTAATATCTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTg                                                                                                                         >  1:955717/1‑149 (MQ=255)                              tttgCATCTTGGTGTTTCATAATACTTCTAATATCTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCACATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATc                                                                                                                      <  2:209413/148‑1 (MQ=255)                               ttgCATCTTGTTGTTTCATAATACTTCTAATATCTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCt                                                                                                                     <  2:1092551/149‑1 (MQ=255)                                   aTCTTGTTGTTTCACAAAACTTCTAATATCTGCAATTTGACTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTatat                                                                                                                 >  1:818230/1‑149 (MQ=255)                                        gttgttTCATAATACTTCTAATATCTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTg                                                                                                            >  2:859355/1‑149 (MQ=255)                                          tgttTCATAATACTTCTAATATCTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGaa                                                                                                          >  2:857386/1‑149 (MQ=255)                                            tttCATAATACTTCTAATATCTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGaaaa                                                                                                        >  1:201344/1‑149 (MQ=255)                                                ataataCTTCTAATATCTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTc                                                                                                    <  1:734390/149‑1 (MQ=255)                                                     aCTTCTAATATCTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAATTGTTTAATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTaaaa                                                                                               >  2:834544/1‑149 (MQ=255)                                                       ttCGAATGTGTGCAATTGGCCTACTATAACTGTTATGTCGATGTTTTATTGAGTCTATATTCCGTTTCACTACTTTCAACTGTTTCAGCATGTTTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTTAAAATTTCTAAAAtt                                                                                             <  2:985642/149‑1 (MQ=255)                                                       tgcTAATATGTGGCTTTTGTCTGCCTTAAATATCATTNTGATTTTTTATTTTGTCTATATTCTGTTTCACTTCTTTCATATGTTTCATCATTTCTTCAGATAATCCTTCTCGGAAGTCGTGATTTGTAATTTTGAAAATTTCTAAAAtt                                                                                             <  2:245786/147‑1 (MQ=255)                                                         cTAATATCTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTc                                                                                           <  2:860619/149‑1 (MQ=255)                                                             tatCTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTa                                                                                       <  1:726064/149‑1 (MQ=255)                                                              atcttataTTTGCCTCCCATACTTATAGTTTTTCTTTTATTTTTTGTCGATTTTCTACTTCGCCATCTCCTAGTGTTTCATCATTTCGCCAGATAGTCCTTCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTAt                                                                                      <  2:375234/142‑1 (MQ=255)                                                               tCTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATAATCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATc                                                                                     >  1:627911/1‑149 (MQ=255)                                                                cTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAATTTTCTAAAATTTCATTAttt                                                                                    >  2:244180/1‑147 (MQ=255)                                                                  gCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCtat                                                                                  >  1:1075442/1‑149 (MQ=255)                                                                  gCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCtat                                                                                  >  1:1104946/1‑149 (MQ=255)                                                                   cAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCtata                                                                                 <  2:376058/149‑1 (MQ=255)                                                                   cAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCtata                                                                                 <  1:609215/149‑1 (MQ=255)                                                                      tttGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGATAATTTCTAAAATTTCATTATCTATACTa                                                                              >  2:265987/1‑149 (MQ=255)                                                                         gCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCa                                                                           <  2:406164/149‑1 (MQ=255)                                                                             aCCATAAATATCATTTTGATTTTTTATTTTGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATaca                                                                       <  2:1002155/149‑1 (MQ=255)                                                                             aCCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATaca                                                                       >  2:44885/1‑149 (MQ=255)                                                                                 tAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCTTTTGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACttt                                                                   <  1:487435/149‑1 (MQ=255)                                                                                 tAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACttt                                                                   <  1:450633/149‑1 (MQ=255)                                                                                    atatCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTc                                                                <  2:201344/149‑1 (MQ=255)                                                                                     tatCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCt                                                               <  1:1020157/149‑1 (MQ=255)                                                                                      atCATTTTGATTTTTTATTTGGTCGATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTTAAAATTTCTAAAATTTCATTATCTATACTATCATAAATTTTTTCtt                                                              >  2:381772/1‑148 (MQ=255)                                                                                       tCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCtat                                                             <  1:115271/149‑1 (MQ=255)                                                                                          ttttGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATaaa                                                          <  2:818230/149‑1 (MQ=255)                                                                                          ttttGATTGTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATaaa                                                          <  2:181685/149‑1 (MQ=255)                                                                                            ttGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGCAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATaaaaa                                                        >  2:274875/1‑148 (MQ=255)                                                                                              gATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTTATTTTTTCTTAAAGTTCATTATCTATACTATCATACACTTTTTCTATAAAAgct                                                      >  2:880896/1‑147 (MQ=255)                                                                                              gATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGAt                                                      >  1:520762/1‑149 (MQ=255)                                                                                                   tttATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTtat                                                 <  1:289495/149‑1 (MQ=255)                                                                                                    ttATTTGGTCTATATTCTGTTGCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTAAAAATTTCTATAATTTCCTTAGCGTTACTATCATACACTTTTTCTATAAAAGATTTtatt                                                >  2:233695/1‑148 (MQ=255)                                                                                                    ttAGTTGGTTTATCGGCTGTTTCACTACTTTCGAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATGCTATCATACTCTTTTTCTATAAAAGATTTtata                                                <  2:251873/149‑1 (MQ=255)                                                                                                     tATTTTGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATAc                                               <  1:1076576/149‑1 (MQ=255)                                                                                                     tATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATAc                                               >  1:771592/1‑149 (MQ=255)                                                                                                      aTTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATAcc                                              >  2:216369/1‑149 (MQ=255)                                                                                                      aTTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATAcc                                              >  2:837025/1‑149 (MQ=255)                                                                                                       tttGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCt                                             <  1:1033795/149‑1 (MQ=255)                                                                                                          ggTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGCGCTATATTTTTGAAAATATCTCAAATTTCATTATAGATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTa                                          >  2:833962/1‑149 (MQ=255)                                                                                                          ggTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTa                                          >  2:849043/1‑149 (MQ=255)                                                                                                             cTATATTCTGTTTCACTACTTTCAAATGTTTCGTCGGGTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAaac                                       >  2:1072544/1‑149 (MQ=255)                                                                                                                tgttCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAaacaac                                    <  1:84887/147‑1 (MQ=255)                                                                                                                  ttCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCTGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTc                                  <  2:537133/149‑1 (MQ=255)                                                                                                                   tCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAGGATTTTATTCCTTTAAACTACTCa                                 >  1:308906/1‑149 (MQ=255)                                                                                                                    cTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCAt                                <  2:396660/149‑1 (MQ=255)                                                                                                                    cTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCAt                                <  2:600278/149‑1 (MQ=255)                                                                                                                    cTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCAt                                <  2:672314/149‑1 (MQ=255)                                                                                                                     tGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCAtt                               >  2:548402/1‑149 (MQ=255)                                                                                                                     tGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCAtt                               >  1:1019975/1‑149 (MQ=255)                                                                                                                     tGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACACAta                               >  2:387788/1‑148 (MQ=255)                                                                                                                     tGTTTCACTACTTTCAAATGTTTCATCATTTCTATAGATACTCCATCTCTGAAGTCGTGACATATATTTTTGAAAATTTCTAAAATTTCATTATCTCTACTATCATAAACTTTTTCTTTAAAAGATTTTTTACCTTTAAACAACttttt                               >  2:683842/1‑145 (MQ=255)                                                                                                                      gTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCCTTa                              >  2:799583/1‑149 (MQ=255)                                                                                                                      gTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACGCATTa                              >  2:809908/1‑149 (MQ=255)                                                                                                                            ctactTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAAttctt                        >  1:636548/1‑149 (MQ=255)                                                                                                                              actTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAAttctttc                      <  2:580360/149‑1 (MQ=255)                                                                                                                                tttCAAATGTTTCTTCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATATAAGATTTTATACCTTTAAACAACTCATTAATtctttctt                    <  2:373709/149‑1 (MQ=255)                                                                                                                                tttCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATtctttctt                    <  2:996969/149‑1 (MQ=255)                                                                                                                                tttCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATtctttctt                    <  1:78156/149‑1 (MQ=255)                                                                                                                                tttCAAATGGTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTAGATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATtctttctt                    <  2:31642/149‑1 (MQ=255)                                                                                                                                tttCAAAGGTCTCATCATTTCTTCAGATACGCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATAAATTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATtctttctt                    <  2:5700/149‑1 (MQ=255)                                                                                                                                 ttCAGATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTctttcttt                   <  1:223603/149‑1 (MQ=255)                                                                                                                                  tCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCtttt                  <  2:107365/149‑1 (MQ=255)                                                                                                                                   cAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTa                 <  1:466130/149‑1 (MQ=255)                                                                                                                                   cAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTa                 <  1:593664/149‑1 (MQ=255)                                                                                                                                   cAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATGAATTCTTTCTTTTa                 >  2:174874/1‑149 (MQ=255)                                                                                                                                       tGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGc             <  1:638853/149‑1 (MQ=255)                                                                                                                                          ttCATCATTTCTTCAGATTCTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATc          <  1:110861/149‑1 (MQ=255)                                                                                                                                          ttCATAATATCTGCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATc          <  2:668354/149‑1 (MQ=255)                                                                                                                                            catcatTTCTTCAGATACTCCATCTCTGTAGTCGCGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATCCa        <  2:726806/149‑1 (MQ=255)                                                                                                                                            catcatTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATCCa        >  2:812698/1‑149 (MQ=255)                                                                                                                                            catcatTTCTTCAGATAATACATATCAGAATTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATCCa        >  2:353386/1‑149 (MQ=255)                                                                                                                                             atcatTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAACTTTCTAAAATTTCCTTAACTATACTATCATACACTTTTTCTATAAAAGATTTCATACCTTTAAACAACTCATTAATTCCTTCTTTTAATGCATCCaa       >  1:795001/1‑149 (MQ=255)                                                                                                                                             atcatTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATCCaa       >  1:862302/1‑149 (MQ=255)                                                                                                                                             atcatTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATGTAATTATCTATACTATCAGACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTAATTAATTCTTTCTGTTAATGCATCCaa       >  1:794999/1‑149 (MQ=255)                                                                                                                                                  ttcttcAGATGCTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTACTGCATCCAATGCaa  <  2:963932/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   AATTAATTTGAAAATTTCCATCTAAAATTGTTGCATCTTGTTGTTTCATAATACTTCTAATATCTGCAATTTGCCTACCATAAATATCATTTTGATTTTTTATTTGGTCTATATTCTGTTTCACTACTTTCAAATGTTTCATCATTTCTTCAGATACTCCATCTCTGAAGTCGTGATCTATATTTTTGAAAATTTCTAAAATTTCATTATCTATACTATCATACACTTTTTCTATAAAAGATTTTATACCTTTAAACAACTCATTAATTCTTTCTTTTAATGCATCCAATGCAA  >  USA300TCH1516_ALE/1606425‑1606718

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.