| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2328479 = | 128 (1.250) | 4 (0.040) | 3/288 | 8.8 | 3.2% | coding (1185/1713 nt) | lacE | PTS system lactose‑specific EIICB component |
| ? | USA300TCH1516_ALE | 2328561 = | 118 (1.180) | coding (1103/1713 nt) | lacE | PTS system lactose‑specific EIICB component | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTGTATTAGCACCAATTGTTAACGTATGGATTTTCAAACTTTTCGTTGAAGTGTTAGGAATGAATAGTTTTAGTGTGAATTTACCTTGGACAACACCAGGTCCATTGGGCATTATCATGGGTACAGGTTTTGGTTTATGGTCATTCGTACTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2328630‑2328479‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actaAAACTATTCATTCCTAACACTTCAACGAAAAGTTTGAAAATCCATACGTTAACAATTGGTGCTAATACAAATGGAATAAAGAACACAGGATTCAATACTAGTGGTGCACCAAATAAAATTGGTTCGTTTACACCAAAGAATGTTGGT > USA300TCH1516_ALE/2328561‑2328707 TTGTATTAGGACCAATTGTTAACGTATGGATTTTCAAACTTTTCGTTGAAGTGTTAGGAATGAATAGTTTTAGTGTGAATTTACCTTGGACAACACCAGGTCCATTGGGCATTATCATGGGTACAGGTTTTGGTTTATGGTCATTCGTA < 2:416384/149‑1 TGTATTAGCACCAATTGTTAACGTATGGATTTTCAAACTTTGCTTTGAAGTGTTAGGAATGCCAATTCGTAGTGTGAATTTACCTTGGACAACACCAGGTCCATTGGGCATTATCATGGGTACAGGTTTTGGTTTATGGTCATTCGTAC > 1:1043384/1‑149 GTATTAGCACCAATTGTTAACGTATGGATTTTCAAACTTTTCGTTGAAGTGTTAGGAATGAATAGTTTTAGTGTGAATTTACCTTGGACAACACCAGGTCCATTGGGCATTATCATGGGTACAGGTTTTGGTTTATGGTCATTCGTACT > 1:437224/1‑149 TGTTAGGAATGAATAGTTTTAGTGTGAATTTACCTTGGACAACACCAGGTCCATTGGGCATTATCATGGGTACAGGTTTTGGTTTATGGTCATTCGTACTAAAACTATTCATTCCTAACACTTCAACGAAAAGTTTGAAAATCCATACG > 1:572248/1‑149 GAATGAATAGTTTTAGTGTGAATTTACCTTGGACAACACCAGGTCCATTGGGCATTATCATGGGTACAGGTTTTGGTTTATGGTCCTTCGTCCTAGAACTATTCATTCCTAACACTTCAACGAAAAGTTTGAAACTCCATACGTTCACA > 1:258340/1‑149 GAATGAATAGTTTTAGTGTGAATTTACCTTGGACAACACCAGGTCCATTGGGCATTATCATGGGTACAGGTTTTGGTTTATGGTCATTCGTACTAAAACTATTCATTCCTAACACTTCAACGAAAAGTTTGAAAATCCATACGTTAACA > 2:402514/1‑149 TCCATTGGGCATTATCATGGGTACAGGTTTTGGTTTATGGTCATTCGTACTAAAACTATTCATTCCTAACACTTCAACGAAAAGTTTGAAAATCCATACGTTAACAATTGGTGCTAATACAAATGGAATAAAGAACACAGGATTCAATA < 2:572248/149‑1 TAAAACTATTCATTCCTAACACTTCAACGAAAAGTATCAAAAGTCAGACGTTAACAATTGGTGCTAATACAAATGGAATAAAGAACACAGGATTCAATACTAGTGGTGCACCAAATAAAATTGGTTCGTTTACACCAAAGAATGTTGGT < 1:755752/149‑1 TTGTATTAGCACCAATTGTTAACGTATGGATTTTCAAACTTTTCGTTGAAGTGTTAGGAATGAATAGTTTTAGTGTGAATTTACCTTGGACAACACCAGGTCCATTGGGCATTATCATGGGTACAGGTTTTGGTTTATGGTCATTCGTACTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2328630‑2328479‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actaAAACTATTCATTCCTAACACTTCAACGAAAAGTTTGAAAATCCATACGTTAACAATTGGTGCTAATACAAATGGAATAAAGAACACAGGATTCAATACTAGTGGTGCACCAAATAAAATTGGTTCGTTTACACCAAAGAATGTTGGT > USA300TCH1516_ALE/2328561‑2328707 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |