New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1305129	76 (1.190)	4 (0.070)	3/236	NT	5.3%	coding (478/1287 nt)	albF	Putative zinc protease AlbF
	?	USA300TCH1516_ALE	= 1305131	75 (1.300)					coding (480/1287 nt)	albF	Putative zinc protease AlbF

TAATATTGAAAACAACATTAAACGTTTACTTACAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/1304978‑1305129 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgatacattgcACGCAATGTATCAAACATTAATTTATATCCAGGTTGCTCTTGATACATTTTTATTTCTTCTGCAATAATACCTTTTTCTTTATCAACAGTTTCTTTTGTAAAATAAGGCGTTTCAACCATTGTAAGTAAACGTTTAATGT  <  USA300TCH1516_ALE/1305131‑1304992                                                                                                                                                                                                                                                                                                      TAATATTGAAAACAACATTAAACGTTTACTTACAATGGTTGAAACGCCTTATTTGACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGACCAACCTGGATATAAACTAATGTT                                                                                                                                                         >  2:320628/1‑141        GAAAACAACATTAAACGTTTACTTACAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATAta                                                                                                                                                  >  2:17172/1‑139         AAAACAACATTAAACGTTTACTTACAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACAT                                                                                                                                                 >  2:9077/1‑141            ACAACATTAAACGTTTACTTACAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGC                                                                                                                                              <  1:585994/141‑1              AACATTAAACGTTTACTTACAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTacgt                                                                                                                                            >  2:28164/1‑137                  tgacACGTGTACTTACAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCACGCAA                                                                                                                                        <  1:430270/137‑1                                                                              acAAAGGTATTATTTCAGAATAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAAACATTAATTTATATCCAGGTTGCTCTTGATACATTTTTATTTCTTCTGCAAT                                                                            <  2:190037/139‑1                                                                                                         AAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAAACATTAATTTATATCCAGGTTGCTCTTGATACATTTTTATTTCTTCTGCAATAATACCTTTTTCTTTATCAACAGTTTC                                                 >  1:321994/1‑141                                                                                                         AAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAAACATTAATTTATATCCAGGTTGCTCTTGATACATTTTTATTTCTTCTGCAATAATACCTTTTTCTTTATCAACAGTTTC                                                 >  1:633215/1‑141                                                                                                                                              TGATACATTGCACGCAATGTATCAAACATTAATTTATATCCAGGTTGCTCTTGATACATTTTTATTTCTTCTGCAATAATACCTTTTTCTTTATCAACAGTTTCTTTTGTAAAATAAGGCGTTTCAACCATTTTAATTAAA            >  2:112075/1‑141                                                                                                                                                 TACATTGGATGCAATGTATCAAACATTAATTTATATCCAGGTTGCTCTTGATACATTTTTATTTCTTCTGCAATAATACCTTTTTCTTTATCATCAGTTTCTTTTGTAAAATAAGGCGTTTCAACCATTGTAAGTAAACGT         <  2:563840/141‑1                                                                                                                                                 TACATTGCACGCAATGTATCAAACATTAATTTATATCCAGGTTGCTCTTGATACATTTTTATTTCTTCTGCAATAATACCTTTTTCTTTATCAACAGTTTCTTTTGTAAAATAAGGCGTTTCAACCATTGTAAGTAAACGT         >  1:662237/1‑141                                                                                                                                                 TACATTGCACGCAATGTATCAAACATTAATTTATATCCAGGTTGCTCTTGATACATTTTTATTTCTTCTGCAATAATACCTTTTTCTTTATCAACAGTTTCTTTTGTAAAATAAGGCGTTTCAACCATTGTAAGTAAACGT         >  1:662009/1‑141                                                                                                                                                    ATTGCACGCAATGTATCAAACATTAATTTATATCCAGGTTGCTCTTGATACATTTTTATTTCTTCTGCAATAATACCTTTTTCTTTATCAACAGTTTCTTTTGTAAAATAAGGCGTTTCAACCATTGTAAGTAAACGTTTA      <  2:331907/141‑1                                                                                                                                                      TGCACGCAATGTATCAAACATTAATTTATATCCAGGTTGCTCTTGATACATTTTTATTTCTTCTGCAATAATACCTTTTTCTTTATCAACAGTTTCTTTTGTAAAATAAGGCGTTTCAACCATTGTAAGTAAACGTTTAAT    >  1:551738/1‑141                                                                                                                                                      TGCACGCAATGTATCAAACATTAATTTATATCCAGGTTGATCTTGATACATTTTTATTTCTTCTGCAATAATACCTTTTTCTTTATCAACAGTTTCTTTTGTAAAATAAGGCGTTTCAACCATTGTAAGTAAACGTTTAAT    >  1:287851/1‑141                                                                                                                                                        CACGCAATGTATCAAACATTAATTTATATCCAGGTTGCTCTTGATACATTTTTATTTCTTCTGCAATAATACCTTTTTCTTTATCAACAGTTTCTTTTGTAAAATAAGGCGTTTCAACCATTGTAAGTAAACGTTTAATGT  <  2:529027/141‑1                                                                                                                                                                                                                                                                                                      TAATATTGAAAACAACATTAAACGTTTACTTACAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/1304978‑1305129 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgatacattgcACGCAATGTATCAAACATTAATTTATATCCAGGTTGCTCTTGATACATTTTTATTTCTTCTGCAATAATACCTTTTTCTTTATCAACAGTTTCTTTTGTAAAATAAGGCGTTTCAACCATTGTAAGTAAACGTTTAATGT  <  USA300TCH1516_ALE/1305131‑1304992

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.