New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1305129	76 (1.190)	4 (0.070)	3/236	NT	5.3%	coding (478/1287 nt)	albF	Putative zinc protease AlbF
	?	USA300TCH1516_ALE	= 1305131	75 (1.300)					coding (480/1287 nt)	albF	Putative zinc protease AlbF

ACATTAAACGTTTACTTACAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACGTTTTATCATCCATCAAATATGGTTTTATTTGTTGTTGGC  >  USA300TCH1516_ALE/1304992‑1305269                                                                                                                                            |                                                                                                                                             aCATTAAACGTTTACTTACAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTg                                                                                                                                             <  2:529027‑M2/141‑2 (MQ=255)   aTTAAACGTTTACTTACAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGATCAACCTGGATATAAATTAATGTTTGATACATTGCGTgca                                                                                                                                           >  1:287851‑M2/1‑138 (MQ=255)   aTTAAACGTTTACTTACAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTgca                                                                                                                                           >  1:551738‑M2/1‑138 (MQ=255)     tAAACGTTTACTTACAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTgcaat                                                                                                                                         <  2:331907‑M2/141‑6 (MQ=255)        aCGTTTACTTACAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTgcaatgta                                                                                                                                      >  1:662009‑M2/1‑133 (MQ=255)        aCGTTTACTTACAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTgcaatgta                                                                                                                                      >  1:662237‑M2/1‑133 (MQ=255)        aCGTTTACTTACAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGATGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCATccaatgta                                                                                                                                      <  2:563840‑M2/141‑9 (MQ=255)           tttAATTAAAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTgcaatgtatca                                                                                                                                   >  2:112075‑M2/1‑130 (MQ=255)             tacttacAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTCATGTTTGATACATTGCGTGCAATGTATcaac                                                                                                                                 <  2:58192/141‑1 (MQ=255)               cttacAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATcaacac                                                                                                                               >  2:702758/1‑140 (MQ=255)                ttacAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCaacaac                                                                                                                              <  1:60833/141‑1 (MQ=255)                ttacAAGGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCaacaac                                                                                                                              <  2:528498/141‑1 (MQ=255)                   cAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATc                                                                                                                         >  1:685888/1‑141 (MQ=255)                   cAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATc                                                                                                                         >  1:256393/1‑141 (MQ=255)                    aaTGGTTGAAACGCCTGATTTTACAAAAGAAACTGTTAATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATcc                                                                                                                        <  2:445969/141‑1 (MQ=255)                       ggTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAAt                                                                                                                     <  1:661392/141‑1 (MQ=255)                       ggTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAAt                                                                                                                     <  1:154063/141‑1 (MQ=255)                         ttGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGTTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAAACTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAGTAc                                                                                                                   >  2:483838/1‑141 (MQ=255)                           gAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACgt                                                                                                                 >  2:447696/1‑141 (MQ=255)                            aaaCGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATCGCGTGAAATGTATCAACAAC‑‑ATCCAATACgtg                                                                                                                <  1:744248/141‑1 (MQ=255)                             aaCGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACgtgt                                                                                                               >  2:291950/1‑141 (MQ=255)                               cGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTg                                                                                                             >  1:747609/1‑141 (MQ=255)                               cGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTg                                                                                                             >  2:234963/1‑141 (MQ=255)                               cGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTg                                                                                                             <  1:606640/141‑1 (MQ=255)                                  catggtgtACAAAAGATACTAGTGATAAAGAAAAGGGTATTATTGCAGAAGAAATAAAAATGGATCAAGAGCAACCTGGATATAAATTAATGTTTTATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGata                                                                                                          <  2:718955/134‑1 (MQ=255)                                    tATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATAtt                                                                                                        >  2:429046/1‑141 (MQ=255)                                    tATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATAtt                                                                                                        >  2:640891/1‑141 (MQ=255)                                    tATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATAtt                                                                                                        >  1:173015/1‑141 (MQ=255)                                    tATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGAGTTGATAtt                                                                                                        >  1:759242/1‑141 (MQ=255)                                     aTTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTg                                                                                                       <  1:523504/141‑1 (MQ=255)                                       tttACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGcc                                                                                                     >  2:426039/1‑141 (MQ=255)                                           aaaaaTAAACTGTTGATAAAGAAAAAAGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTa                                                                                                 <  2:118165/140‑1 (MQ=255)                                              aaGCAACTTCTGAAAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAgtg                                                                                              <  2:669192/141‑1 (MQ=255)                                              aaGAAACTGTTGAAAAAGAAACAGGTATTAGTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAgtt                                                                                              <  1:529444/141‑2 (MQ=255)                                              aaGAAACTGTAGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATAAATGTTTTATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAgtg                                                                                              <  2:109399/141‑1 (MQ=255)                                               aGAAACTGTTGATAAAGAAAAAGGTATTAGTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAAGGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAgtgt                                                                                             <  2:727497/141‑1 (MQ=255)                                               aGAAACTGTTAATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGTAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCTGGTAgtgt                                                                                             <  2:259935/141‑1 (MQ=255)                                                gAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCACgcaatgtatcaaacattaatttatatccaggttgctcttgatacattt                                                                                              >  1:633215‑M2/1‑93 (MQ=255)                                                gAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCACgcaatgtatcaaacattaatttatatccaggttgctcttgatacattt                                                                                              >  1:321994‑M2/1‑93 (MQ=255)                                                         gATAAAGAAAAAGGTATTATTGCAGAAGATATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGACGGTAGTGTAGAAAGtata                                                                                   >  1:724877/1‑141 (MQ=255)                                                         gATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGCTAGTGTAGAAAGtata                                                                                   >  2:545138/1‑141 (MQ=255)                                                              aGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGa                                                                              >  1:315816/1‑141 (MQ=255)                                                              aGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGATAGAGTAGAAAGTATATACGa                                                                              >  2:745171/1‑141 (MQ=255)                                                               gAAAAAGGTAATCATGCATATGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGat                                                                             <  1:291637/141‑1 (MQ=255)                                                                aaaaaGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATCCGata                                                                            >  2:450346/1‑141 (MQ=255)                                                                aaaaaGGTATTATTGCAGAAGAAATAAAAATGTATAAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTACCGGTAGTGGAGAAAGTATATAAGata                                                                            >  2:12443/1‑141 (MQ=255)                                                                  aaaGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATAtt                                                                          >  2:105687/1‑141 (MQ=255)                                                                   aaGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACATGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATAAACAAC‑‑ATCCAATACGTGTTGATATTGATGCTAGTGTAGAAAGTATATACGATATTa                                                                         >  2:542267/1‑141 (MQ=255)                                                                      gTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACaa                                                                      >  2:413984/1‑141 (MQ=255)                                                                      gTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATACAATACGTGTTGATATTGCCGATACTGTAGACAGTATATACGATATTACaa                                                                      >  2:85453/1‑141 (MQ=255)                                                                        attattGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACaaaa                                                                    <  1:8220/141‑1 (MQ=255)                                                                           attGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCACgcaatgtatcaaacattaatttatatccaggttgctcttgatacatttttatttattctgaaataatacctttgt                                                                   <  2:190037‑M2/141‑76 (MQ=255)                                                                              gCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAgatgat                                                              >  1:727472/1‑141 (MQ=255)                                                                              gCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAgatgat                                                              >  1:676722/1‑141 (MQ=255)                                                                               cAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGAtt                                                             >  1:708182/1‑141 (MQ=255)                                                                                   agaaagaaAAATGTATCAAGAGCAAGCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTa                                                         <  2:105378/141‑1 (MQ=255)                                                                                   agaaATAAAAATGTATCAAGAGCGACTTGGATATAAATTAGTGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTa                                                         <  2:105379/141‑1 (MQ=255)                                                                                   agaaATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTAGTa                                                         >  1:34639/1‑141 (MQ=255)                                                                                    gaaATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCTTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATCCGATATTACAAAAGAAAATTAGTac                                                        >  1:506409/1‑140 (MQ=255)                                                                                     aaaTAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATc                                                       >  1:754974/1‑141 (MQ=255)                                                                                      aaTAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCt                                                      >  1:309985/1‑141 (MQ=255)                                                                                          aaaaTGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATGCGATATTACAAAAGATGATTTGTATCTATGt                                                  >  1:254929/1‑141 (MQ=255)                                                                                            aaTGTATCAAGAGCAACCTGTATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTa                                                <  2:696067/141‑1 (MQ=255)                                                                                              tGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGGTATg                                              >  1:154457/1‑141 (MQ=255)                                                                                                    aaGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACGt                                        >  1:665120/1‑141 (MQ=255)                                                                                                    aaGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTAGCTATGTTATGAAACGt                                        >  1:772710/1‑141 (MQ=255)                                                                                                      gagCAAACTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATCAAACGttt                                      <  2:524798/141‑1 (MQ=255)                                                                                                        gCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACGTTTTa                                    >  1:748310/1‑141 (MQ=255)                                                                                                        gCAACCTGGATATAAATTAATGTTTGATACAATGCCTGCAAAG‑‑TCCACATCGGATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACGTTTTa                                    <  1:771550/141‑1 (MQ=255)                                                                                                           aCCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGCAAGTTTATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACGTTTTatca                                 >  1:773565/1‑141 (MQ=255)                                                                                                           aCCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACGTTTTatca                                 <  1:291195/141‑1 (MQ=255)                                                                                                               ggATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACATTTTAGcatcca                             >  2:70099/1‑141 (MQ=255)                                                                                                               ggATATAAATTAATGTTTGATACATTATGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATATTATAAAACGTTTtctccgcca                             >  2:136769/1‑136 (MQ=255)                                                                                                                   ataAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACGTTTTATCATCCATCaa                         >  2:720548/1‑141 (MQ=255)                                                                                                                    taAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAGAGTATATACGATATTACAAAAGATGATATGTATCTATGTTATGAAACGTTTTATCATCCAACaaa                        >  1:298402/1‑141 (MQ=255)                                                                                                                       aTTAATGTTTGATACATTGCGTGCAATGTATCAAAAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACGTTTTATCATCCATCAAatat                     <  2:571728/141‑1 (MQ=255)                                                                                                                        ttAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACGTTTTATCATCCATCAAATATg                    <  1:68457/141‑1 (MQ=255)                                                                                                                         tAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACGTTTTATCATCCATCAAATATgg                   <  2:71375/141‑1 (MQ=255)                                                                                                                            tGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTTTTGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATATATGTTAGGGAAAGTGTTATCATTCATCAAAAATGGatt                >  1:158534/1‑141 (MQ=255)                                                                                                                            tGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATATATGATATGAAACGTGTTATAATACATCAACAAAGGttt                >  1:748552/1‑141 (MQ=255)                                                                                                                             ttttGATATATTGCGTGCAGTGTATTATCTAT‑‑ATCCAATACTGGTTGATATTGCCGGTAGTGTAGATAGTATATACGATATTACAAAAGATTATTTGTTTCTATGTTAGGAAACGTTTTATCATCCATCAAATATGGtttt               <  2:697333/140‑1 (MQ=255)                                                                                                                               ttGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATTTATAATATGAAACGTTTTATCATACATCAAATATGGTTTTAt             >  1:607584/1‑141 (MQ=255)                                                                                                                               ttGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACGTTTTATCATCCATCAAATATGGTTTTAt             <  1:169316/141‑1 (MQ=255)                                                                                                                                tGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACGTTTTATCATCCATCAAATATGGTTTTAtt            >  2:599726/1‑141 (MQ=255)                                                                                                                                 gATACATCGCGTGCAATGTATCAACAAC‑‑ATCCAACACGTGTTGATATTGCCGGTAGCGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACGTTTTATCATCCATCAAATATGGTTTTAttt           <  1:669887/141‑1 (MQ=255)                                                                                                                                    aCATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACGTTTTATCATCCATCAAATATGGTTTTATttgtt        <  1:447696/141‑1 (MQ=255)                                                                                                                                    aCATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACGTTTTATCATCCATCAAATATGGTTTTATttgtt        <  2:748310/141‑1 (MQ=255)                                                                                                                                      tttGTGTGCTATGTATCAACAAC‑‑AACCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACGTTTTATCATCCATCAAATATGGTTTTATttgttgt      <  1:649940/140‑1 (MQ=255)                                                                                                                                       ttGCGTgcaatgtatcaaacattaatttatatccaggttgctcttgatacatttttatttcttctgcaataatacctttttctttatcaacagtttcttttgtaaaataaggcgtttcaaccattgtaagtacacgtgtca       <  1:430270‑M2/141‑136 (MQ=255)                                                                                                                                       ttGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACGTTTTATCATCCATCAAATATTGTTTTATttgttgtt     >  1:500749/1‑141 (MQ=255)                                                                                                                                       ttGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATAATGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATTTTATGAAACGTTTTATCATCTATAAAATATAGTTTTATttgttgtt     >  2:90224/1‑141 (MQ=255)                                                                                                                                         gCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACGTTTTATCATCCATCAAATATGGTTTTATTTGTTGTTgg   >  2:745022/1‑141 (MQ=255)                                                                                                                                          cGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATTATTTGTATCTATGTTATGAAACGTTTTATCATCCATCAAATATGGTTTTATTTGTTGTTGGc  <  1:123027/141‑1 (MQ=255)                                                                                                                                          cGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACGTTTTATCATCCATCAAATATGGTTTTATTTGTTGTTGGc  <  1:723181/141‑1 (MQ=255)                                                                                                                                            |                                                                                                                                             ACATTAAACGTTTACTTACAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACGTTTTATCATCCATCAAATATGGTTTTATTTGTTGTTGGC  >  USA300TCH1516_ALE/1304992‑1305269

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.