BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1305129	76 (1.190)	4 (0.070)	3/236	NT	5.3%	coding (478/1287 nt)	albF	Putative zinc protease AlbF
*	?	USA300TCH1516_ALE	= 1305131	75 (1.300)	4 (0.070)	3/236	NT	5.3%	coding (480/1287 nt)	albF	Putative zinc protease AlbF

Only 100 of 108 total aligned reads displayed.

ACAACATTAAACGTTTACTTACAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACGTTTTATCATCCATCAAATATGGTTTTATTTGTTGTTGGC  >  USA300TCH1516_ALE/1304989‑1305269

acaacaTTAAACGTTTACTTACAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGC                                                                                                                                                <  1:585994‑M1/141‑1 (MQ=255)

 caacaTTTAACGTTTACTTACAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCg                                                                                                                                               <  1:24318/141‑1 (MQ=255)

   aCATTAAACGTTTACTTACAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTg                                                                                                                                             <  2:529027‑M2/141‑2 (MQ=255)

     aTTAAACGTTTACTTACAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGATCAACCTGGATATAAATTAATGTTTGATACATTGCGTgca                                                                                                                                           >  1:287851‑M2/1‑138 (MQ=255)

     aTTAAACGTTTACTTACAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTgca                                                                                                                                           >  1:551738‑M2/1‑138 (MQ=255)

      tgacacgtgTACTTACAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCacgcaa                                                                                                                                          <  1:430270‑M1/137‑7 (MQ=255)

       tAAACGTTTACTTACAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTgcaat                                                                                                                                         <  2:331907‑M2/141‑6 (MQ=255)

          aCGTTTACTTACAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTgcaatgta                                                                                                                                      >  1:662009‑M2/1‑133 (MQ=255)

          aCGTTTACTTACAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTgcaatgta                                                                                                                                      >  1:662237‑M2/1‑133 (MQ=255)

          aCGTTTACTTACAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGATGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCATccaatgta                                                                                                                                      <  2:563840‑M2/141‑9 (MQ=255)

             tttAATTAAAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTgcaatgtatca                                                                                                                                   >  2:112075‑M2/1‑130 (MQ=255)

               tacttacAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTCATGTTTGATACATTGCGTGCAATGTATcaac                                                                                                                                 <  2:58192/141‑1 (MQ=255)

                 cttacAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATcaacac                                                                                                                               >  2:702758/1‑140 (MQ=255)

                  ttacAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCaacaac                                                                                                                              <  1:60833/141‑1 (MQ=255)

                  ttacAAGGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCaacaac                                                                                                                              <  2:528498/141‑1 (MQ=255)

                     cAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATc                                                                                                                         >  1:256393/1‑141 (MQ=255)

                     cAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATc                                                                                                                         >  1:685888/1‑141 (MQ=255)

                      aaTGGTTGAAACGCCTGATTTTACAAAAGAAACTGTTAATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATcc                                                                                                                        <  2:445969/141‑1 (MQ=255)

                         ggTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAAt                                                                                                                     <  1:661392/141‑1 (MQ=255)

                         ggTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAAt                                                                                                                     <  1:154063/141‑1 (MQ=255)

                           ttGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGTTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAAACTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAGTAc                                                                                                                   >  2:483838/1‑141 (MQ=255)

                             gAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACgt                                                                                                                 >  2:447696/1‑141 (MQ=255)

                              aaaCGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATCGCGTGAAATGTATCAACAAC‑‑ATCCAATACgtg                                                                                                                <  1:744248/141‑1 (MQ=255)

                               aaCGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACgtgt                                                                                                               >  2:291950/1‑141 (MQ=255)

                                 cGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTg                                                                                                             >  2:234963/1‑141 (MQ=255)

                                 cGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTg                                                                                                             >  1:747609/1‑141 (MQ=255)

                                 cGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTg                                                                                                             <  1:606640/141‑1 (MQ=255)

                                    catggtgtACAAAAGATACTAGTGATAAAGAAAAGGGTATTATTGCAGAAGAAATAAAAATGGATCAAGAGCAACCTGGATATAAATTAATGTTTTATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGata                                                                                                          <  2:718955/134‑1 (MQ=255)

                                      tATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATAtt                                                                                                        >  2:429046/1‑141 (MQ=255)

                                      tATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATAtt                                                                                                        >  1:173015/1‑141 (MQ=255)

                                      tATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATAtt                                                                                                        >  2:640891/1‑141 (MQ=255)

                                      tATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGAGTTGATAtt                                                                                                        >  1:759242/1‑141 (MQ=255)

                                       aTTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTg                                                                                                       <  1:523504/141‑1 (MQ=255)

                                         tttACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGcc                                                                                                     >  2:426039/1‑141 (MQ=255)

                                             aaaaaTAAACTGTTGATAAAGAAAAAAGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTa                                                                                                 <  2:118165/140‑1 (MQ=255)

                                                aaGAAACTGTTGAAAAAGAAACAGGTATTAGTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAgtt                                                                                              <  1:529444/141‑2 (MQ=255)

                                                aaGAAACTGTAGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATAAATGTTTTATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAgtg                                                                                              <  2:109399/141‑1 (MQ=255)

                                                 aGAAACTGTTGATAAAGAAAAAGGTATTAGTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAAGGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAgtgt                                                                                             <  2:727497/141‑1 (MQ=255)

                                                 aGAAACTGTTAATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGTAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCTGGTAgtgt                                                                                             <  2:259935/141‑1 (MQ=255)

                                                  gAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCACgcaatgtatcaaacattaatttatatccaggttgctcttgatacattt                                                                                              >  1:633215‑M2/1‑93 (MQ=255)

                                                  gAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCACgcaatgtatcaaacattaatttatatccaggttgctcttgatacattt                                                                                              >  1:321994‑M2/1‑93 (MQ=255)

                                                           gATAAAGAAAAAGGTATTATTGCAGAAGATATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGACGGTAGTGTAGAAAGtata                                                                                   >  1:724877/1‑141 (MQ=255)

                                                           gATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGCTAGTGTAGAAAGtata                                                                                   >  2:545138/1‑141 (MQ=255)

                                                                aGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGa                                                                              >  1:315816/1‑141 (MQ=255)

                                                                aGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGATAGAGTAGAAAGTATATACGa                                                                              >  2:745171/1‑141 (MQ=255)

                                                                 gAAAAAGGTAATCATGCATATGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGat                                                                             <  1:291637/141‑1 (MQ=255)

                                                                  acaaaggTATTATTTCAGAATAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCgtgcaatgtatcaaacattaatttatatccaggttgctcttgatacatttttatttcttctgcaat                                                                              <  2:190037‑M1/139‑67 (MQ=255)

                                                                  aaaaaGGTATTATTGCAGAAGAAATAAAAATGTATAAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTACCGGTAGTGGAGAAAGTATATAAGata                                                                            >  2:12443/1‑141 (MQ=255)

                                                                    aaaGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATAtt                                                                          >  2:105687/1‑141 (MQ=255)

                                                                     aaGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACATGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATAAACAAC‑‑ATCCAATACGTGTTGATATTGATGCTAGTGTAGAAAGTATATACGATATTa                                                                         >  2:542267/1‑141 (MQ=255)

                                                                        gTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACaa                                                                      >  2:413984/1‑141 (MQ=255)

                                                                        gTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATACAATACGTGTTGATATTGCCGATACTGTAGACAGTATATACGATATTACaa                                                                      >  2:85453/1‑141 (MQ=255)

                                                                          attattGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACaaaa                                                                    <  1:8220/141‑1 (MQ=255)

                                                                             attGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCACgcaatgtatcaaacattaatttatatccaggttgctcttgatacatttttatttattctgaaataatacctttgt                                                                   <  2:190037‑M2/141‑76 (MQ=255)

                                                                                gCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAgatgat                                                              >  1:727472/1‑141 (MQ=255)

                                                                                gCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAgatgat                                                              >  1:676722/1‑141 (MQ=255)

                                                                                 cAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGAtt                                                             >  1:708182/1‑141 (MQ=255)

                                                                                     agaaagaaAAATGTATCAAGAGCAAGCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTa                                                         <  2:105378/141‑1 (MQ=255)

                                                                                     agaaATAAAAATGTATCAAGAGCGACTTGGATATAAATTAGTGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTa                                                         <  2:105379/141‑1 (MQ=255)

                                                                                     agaaATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTAGTa                                                         >  1:34639/1‑141 (MQ=255)

                                                                                      gaaATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCTTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATCCGATATTACAAAAGAAAATTAGTac                                                        >  1:506409/1‑140 (MQ=255)

                                                                                        aaTAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCt                                                      >  1:309985/1‑141 (MQ=255)

                                                                                            aaaaTGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATGCGATATTACAAAAGATGATTTGTATCTATGt                                                  >  1:254929/1‑141 (MQ=255)

                                                                                             aaaTGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCgtgcaatgtatcaaacattaatttatatccaggttgctcttgatacatttttatttcttctgcaataatacctttttctttatcaacagtttc                                                   >  1:633215‑M1/1‑48 (MQ=255)

                                                                                             aaaTGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCgtgcaatgtatcaaacattaatttatatccaggttgctcttgatacatttttatttcttctgcaataatacctttttctttatcaacagtttc                                                   >  1:321994‑M1/1‑48 (MQ=255)

                                                                                              aaTGTATCAAGAGCAACCTGTATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTa                                                <  2:696067/141‑1 (MQ=255)

                                                                                                tGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGGTATg                                              >  1:154457/1‑141 (MQ=255)

                                                                                                      aaGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTAGCTATGTTATGAAACGt                                        >  1:772710/1‑141 (MQ=255)

                                                                                                        gagCAAACTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATCAAACGttt                                      <  2:524798/141‑1 (MQ=255)

                                                                                                          gCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACGTTTTa                                    >  1:748310/1‑141 (MQ=255)

                                                                                                          gCAACCTGGATATAAATTAATGTTTGATACAATGCCTGCAAAG‑‑TCCACATCGGATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACGTTTTa                                    <  1:771550/141‑1 (MQ=255)

                                                                                                             aCCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGCAAGTTTATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACGTTTTatca                                 >  1:773565/1‑141 (MQ=255)

                                                                                                             aCCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACGTTTTatca                                 <  1:291195/141‑1 (MQ=255)

                                                                                                                 ggATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACATTTTAGcatcca                             >  2:70099/1‑141 (MQ=255)

                                                                                                                     ataAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACGTTTTATCATCCATCaa                         >  2:720548/1‑141 (MQ=255)

                                                                                                                         aTTAATGTTTGATACATTGCGTGCAATGTATCAAAAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACGTTTTATCATCCATCAAatat                     <  2:571728/141‑1 (MQ=255)

                                                                                                                          ttAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACGTTTTATCATCCATCAAATATg                    <  1:68457/141‑1 (MQ=255)

                                                                                                                           tAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACGTTTTATCATCCATCAAATATgg                   <  2:71375/141‑1 (MQ=255)

                                                                                                                              tGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTTTTGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATATATGTTAGGGAAAGTGTTATCATTCATCAAAAATGGatt                >  1:158534/1‑141 (MQ=255)

                                                                                                                              tGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATATATGATATGAAACGTGTTATAATACATCAACAAAGGttt                >  1:748552/1‑141 (MQ=255)

                                                                                                                               ttttGATATATTGCGTGCAGTGTATTATCTAT‑‑ATCCAATACTGGTTGATATTGCCGGTAGTGTAGATAGTATATACGATATTACAAAAGATTATTTGTTTCTATGTTAGGAAACGTTTTATCATCCATCAAATATGGtttt               <  2:697333/140‑1 (MQ=255)

                                                                                                                                 ttGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATTTATAATATGAAACGTTTTATCATACATCAAATATGGTTTTAt             >  1:607584/1‑141 (MQ=255)

                                                                                                                                 ttGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACGTTTTATCATCCATCAAATATGGTTTTAt             <  1:169316/141‑1 (MQ=255)

                                                                                                                                  tGATACATTGCacgcaatgtatcaaacattaatttatatccaggttgctcttgatacatttttatttcttctgcaataatacctttttctttatcaacagtttcttttgtaaaataaggcgtttcaaccattttaattaaa              >  2:112075‑M1/1‑11 (MQ=255)

                                                                                                                                  tGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACGTTTTATCATCCATCAAATATGGTTTTAtt            >  2:599726/1‑141 (MQ=255)

                                                                                                                                   gATACATCGCGTGCAATGTATCAACAAC‑‑ATCCAACACGTGTTGATATTGCCGGTAGCGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACGTTTTATCATCCATCAAATATGGTTTTAttt           <  1:669887/141‑1 (MQ=255)

                                                                                                                                     tACATTGGatgcaatgtatcaaacattaatttatatccaggttgctcttgatacatttttatttcttctgcaataatacctttttctttatcatcagtttcttttgtaaaataaggcgtttcaaccattgtaagtaaacgt           <  2:563840‑M1/141‑134 (MQ=255)

                                                                                                                                     tACATTGCacgcaatgtatcaaacattaatttatatccaggttgctcttgatacatttttatttcttctgcaataatacctttttctttatcaacagtttcttttgtaaaataaggcgtttcaaccattgtaagtaaacgt           >  1:662009‑M1/1‑8 (MQ=255)

                                                                                                                                     tACATTGCacgcaatgtatcaaacattaatttatatccaggttgctcttgatacatttttatttcttctgcaataatacctttttctttatcaacagtttcttttgtaaaataaggcgtttcaaccattgtaagtaaacgt           >  1:662237‑M1/1‑8 (MQ=255)

                                                                                                                                      aCATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACGTTTTATCATCCATCAAATATGGTTTTATttgtt        <  1:447696/141‑1 (MQ=255)

                                                                                                                                      aCATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACGTTTTATCATCCATCAAATATGGTTTTATttgtt        <  2:748310/141‑1 (MQ=255)

                                                                                                                                        tttGTGTGCTATGTATCAACAAC‑‑AACCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACGTTTTATCATCCATCAAATATGGTTTTATttgttgt      <  1:649940/140‑1 (MQ=255)

                                                                                                                                        aTTGCacgcaatgtatcaaacattaatttatatccaggttgctcttgatacatttttatttcttctgcaataatacctttttctttatcaacagtttcttttgtaaaataaggcgtttcaaccattgtaagtaaacgttta        <  2:331907‑M1/141‑137 (MQ=255)

                                                                                                                                         ttGCGTgcaatgtatcaaacattaatttatatccaggttgctcttgatacatttttatttcttctgcaataatacctttttctttatcaacagtttcttttgtaaaataaggcgtttcaaccattgtaagtacacgtgtca       <  1:430270‑M2/141‑136 (MQ=255)

                                                                                                                                         ttGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACGTTTTATCATCCATCAAATATTGTTTTATttgttgtt     >  1:500749/1‑141 (MQ=255)

                                                                                                                                          tGCacgcaatgtatcaaacattaatttatatccaggttgatcttgatacatttttatttcttctgcaataatacctttttctttatcaacagtttcttttgtaaaataaggcgtttcaaccattgtaagtaaacgtttaat      >  1:287851‑M1/1‑3 (MQ=255)

                                                                                                                                           gCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACGTTTTATCATCCATCAAATATGGTTTTATTTGTTGTTgg   >  2:745022/1‑141 (MQ=255)

                                                                                                                                            cacgcaatgtatcaaacattaatttatatccaggttgctcttgatacatttttatttcttctgcaataatacctttttctttatcaacagtttcttttgtaaaataaggcgtttcaaccattgtaagtaaacgtttaatgt    <  2:529027‑M1/141‑141 (MQ=255)

                                                                                                                                            cGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATTATTTGTATCTATGTTATGAAACGTTTTATCATCCATCAAATATGGTTTTATTTGTTGTTGGc  <  1:123027/141‑1 (MQ=255)

                                                                                                                                            cGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACGTTTTATCATCCATCAAATATGGTTTTATTTGTTGTTGGc  <  1:723181/141‑1 (MQ=255)

ACAACATTAAACGTTTACTTACAATGGTTGAAACGCCTTATTTTACAAAAGAAACTGTTGATAAAGAAAAAGGTATTATTGCAGAAGAAATAAAAATGTATCAAGAGCAACCTGGATATAAATTAATGTTTGATACATTGCGTGCAATGTATCAACAAC‑‑ATCCAATACGTGTTGATATTGCCGGTAGTGTAGAAAGTATATACGATATTACAAAAGATGATTTGTATCTATGTTATGAAACGTTTTATCATCCATCAAATATGGTTTTATTTGTTGTTGGC  >  USA300TCH1516_ALE/1304989‑1305269

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.