New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 553221	38 (0.690)	5 (0.100)	4/232	NT	12.7%	intergenic (+188/‑2871)	folB/rrf2	dihydroneopterin aldolase/5S ribosomal RNA
	?	CP000730	= 553245	34 (0.680)					intergenic (+212/‑2847)	folB/rrf2	dihydroneopterin aldolase/5S ribosomal RNA

AGTTAAACGATGCTATAAAGATTTTGAATGAATATGATGGTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGATTTACCAAAA  >  CP000730/553082‑553359                                                                                                                                            |                                                                                                                                             aGTTCAACGATGCTATAAAGATTTTGAATGAATATGATGGTAATAACGAATATAATATTCCACCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAAcaccac                                                                                                                                             >  2:317461/1‑141 (MQ=255)    tAAACGATGCTATAAAGATTTTGAATGAATATGATGGTATTAACGTTTCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTTTGTGTTGAAATTCAAACAACACTc‑‑a                                                                                                                                        >  2:420842/1‑141 (MQ=255)    tAAACGATGCTATAAAGATTTTGAATGAATATGATGGTATTAACGTGTCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGAGTTGAAATTCAAACAACACTc‑‑a                                                                                                                                        >  1:590511/1‑141 (MQ=255)    tAAACGATGCTATAAAGATTTTGAATGAATATGATGGTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTc‑‑a                                                                                                                                        >  2:433663/1‑141 (MQ=255)        cGATGCTATAAAGATTTTGAATGAATATGATGGTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGt                                                                                                                                    >  2:368165/1‑141 (MQ=255)           ttcTATAAAGATTTTGTATTAATATGATGGTATTAACGTATCTAATATTTCTCCGATTTATGAAACATCACCAGTTGGGTATATTTATCAACCGAACTTTTTAAATTTGTGTTTTGTAATTCAAACAACTCTC‑‑ACAGTAtt                                                                                                                                 <  2:457020/139‑1 (MQ=255)           tGCTATAAAGATTTTGAATGAATATGATGGTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTAtt                                                                                                                                 <  2:353580/141‑1 (MQ=255)           tGCTATAAAGATTTTGAATGAATATGATGGTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTAtt                                                                                                                                 <  2:35615/141‑1 (MQ=255)                taAAGATTTTGAATGAATATGATGGTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAAc                                                                                                                            <  2:168517/141‑1 (MQ=255)                taAAGATTTTGAATGAATATGATGGTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAAc                                                                                                                            <  2:605646/141‑1 (MQ=255)                 aaaGATTTTGAATGAATATGATGGTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACt                                                                                                                           <  1:73224/141‑1 (MQ=255)                       tttGAATTAATATGATGGTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTNAAANTCAANCAACACTC‑‑ANNGTATTACAACTGTTGGa                                                                                                                     <  1:617705/141‑1 (MQ=255)                       tttGAATGAATATGATGGTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGa                                                                                                                     <  1:306078/141‑1 (MQ=255)                        ttGAATGAATATGATGGTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACAttccaacagttgtaatactgtgag                                                                                                                      <  2:377444‑M1/141‑25 (MQ=255)                          gaatgaatATGATGGTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATAGTGAGCAACCTAACTTTTTAGATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAAtg                                                                                                                  >  2:222091‑M2/1‑139 (MQ=255)                             tgaatATGATGGTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACAttccaacagttgtaatactgtgagtgttg                                                                                                                 <  1:215654‑M1/141‑30 (MQ=255)                                atatGATGGTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAAtgttgttt                                                                                                            <  1:162543‑M2/141‑9 (MQ=255)                                            tAACGTATCTAATATTTCTCCGAATTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAAATTTTTAAATTTGTGTGTTGAAATTCAAAAAACACTC‑‑AAAGTATTACAACTGTTGGAATGTTGTTTGAAGACagacga                                                                                                >  2:388489/1‑141 (MQ=255)                                                   tCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTa                                                                                         <  1:14508/141‑1 (MQ=255)                                                         atTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGt                                                                                   >  1:178654/1‑141 (MQ=255)                                                             ctcCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTa                                                                               <  2:485558/141‑1 (MQ=255)                                                               ccGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACAttccaacagttgtaatactgtgagtgttg                                                                                                                 >  1:110896‑M1/1‑78 (MQ=255)                                                               ccGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACAttccaacagttgtaatactgtgagtgttg                                                                                                                 <  2:110896‑M1/107‑30 (MQ=255)                                                                  aTTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAg                                                                          <  2:209193/141‑1 (MQ=255)                                                                     tATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGaa                                                                       >  1:234995/1‑141 (MQ=255)                                                                        tttctaGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGa                                                                    <  1:204614/136‑1 (MQ=255)                                                                         aaaCAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACATTCCAACAGTTGTAATACTGT‑‑GAGtgttgtttgaatttcaacacacaaatttaaaaagttaggttgctcagta                                                                   >  1:120081‑M2/1‑92 (MQ=255)                                                                         aaaCAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGAt                                                                   <  1:349212/141‑1 (MQ=255)                                                                                aCCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAgg                                                                         >  2:436810/1‑128 (MQ=255)                                                                                aCCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAgg                                                                         <  1:436810/128‑1 (MQ=255)                                                                                 ccAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCt                                                           >  1:475679/1‑141 (MQ=255)                                                                                 ccAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCt                                                           >  1:475678/1‑141 (MQ=255)                                                                                   aGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAg                                                         >  1:424981/1‑141 (MQ=255)                                                                                      tGGGTATACTGAGCAACCTAACTTATTATAATGGTCTATTTAAAATCAAACAACACGC‑‑ACAGTATTACAACTGTTGGAGTGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAAc                                                      <  1:317461/141‑1 (MQ=255)                                                                                        ggTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACtt                                                    <  1:61651/141‑1 (MQ=255)                                                                                           ataCTGAGCAACTTAACTTTTTAAATCTGTGTGTTGAGATTCAACCAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGCCAGAAGAATGTTTACACCGTATTAGAAAGGAACGATCGGGTACTAGAACTTTaa                                                 >  2:82992/1‑140 (MQ=255)                                                                                            taCTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACActcacagtattacaactgttggaatgttgtttgaatttcaacacacaaatttaaaaagttaggttgctcagtatacccaactggtgctgttt                                                  >  1:120081‑M1/1‑49 (MQ=255)                                                                                             aCTGAGCAACCTAACTTTTTCAATTTGTGTGTTGAAATTCAAACAACCCTC‑‑ACCGTATCACCACCGTCGGCATGAAGTTTCAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGAt                                               <  1:420813/141‑1 (MQ=255)                                                                                                  gCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGa                                          <  1:426116/141‑1 (MQ=255)                                                                                                  gCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGa                                          <  1:75135/141‑1 (MQ=255)                                                                                                  gCAACCTAACTTTGTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGa                                          <  2:593002/141‑1 (MQ=255)                                                                                                            tttttAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTttgttg                                >  2:691346/1‑141 (MQ=255)                                                                                                                    tttGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGgaga                        <  2:306828/141‑1 (MQ=255)                                                                                                                     ttGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGagaa                       >  1:358795/1‑141 (MQ=255)                                                                                                                      tttttgtTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACTGTATTAGAAAGGAACGATGGGGACCTAGAACTTTAGATGTGGATATTTTGTTGTATGGagaag                      >  2:592865/5‑141 (MQ=255)                                                                                                                        tgtgtTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGATGTATGGAgaagaa                    >  2:159338/1‑141 (MQ=255)                                                                                                                            ttGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGa                >  2:337586/1‑141 (MQ=255)                                                                                                                                     aaaCAACAttccaacagttgtaatactgtgagtgttgtttgaatttcaacacacaaatttaaaaagttaggttgctcagtatacccaactggtgctgtttcataaatcggagaaatattagatacgttaataccatcatat         <  1:162543‑M1/141‑134 (MQ=255)                                                                                                                                     aaaCAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGATTTAc       >  1:441676/1‑141 (MQ=255)                                                                                                                                     aaaCAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGATTTAc       >  1:486119/1‑141 (MQ=255)                                                                                                                                     aaaCAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGATTTAc       >  2:310393/1‑141 (MQ=255)                                                                                                                                        caacaCTC‑‑ACAGTATTACAACTGTTGGAAtgttgtttgaatttcaacacacaaatttaaaaagttaggttgctcagtatacccaactggtgctgtttcataaatcggagaaatattagatacgttaataccatcatattca    <  1:215654‑M2/141‑113 (MQ=255)                                                                                                                                        caacaCTC‑‑ACAGTATTACAACTGTTGGAAtgttgtttgaatttcaacacacaaatttaaaaagttaggttgctcagtatacccaactggtgctgtttcataaatcgg                                      >  1:110896‑M2/1‑29 (MQ=255)                                                                                                                                        caacaCTC‑‑ACAGTATTACAACTGTTGGAAtgttgtttgaatttcaacacacaaatttaaaaagttaggttgctcagtatacccaactggtgctgtttcataaatcgg                                      <  2:110896‑M2/107‑79 (MQ=255)                                                                                                                                          acacTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGATTTACCaaaa  >  1:535183/1‑141 (MQ=255)                                                                                                                                           cattccaacagttgtaatactgtgagtgttgtttgaatttcaacacacaaatctaaaaagttaggttgctcactatacccaactggtgctgtttcataaatcggagaaatattagatacgttaataccatcatattcattc   >  2:222091‑M1/1‑2 (MQ=255)                                                                                                                                            |                                                                                                                                             AGTTAAACGATGCTATAAAGATTTTGAATGAATATGATGGTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGATTTACCAAAA  >  CP000730/553082‑553359

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.