New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 553221	38 (0.690)	5 (0.100)	4/232	NT	12.7%	intergenic (+188/‑2871)	folB/rrf2	dihydroneopterin aldolase/5S ribosomal RNA
	?	CP000730	= 553245	34 (0.680)					intergenic (+212/‑2847)	folB/rrf2	dihydroneopterin aldolase/5S ribosomal RNA

GAATGAATATGATGGTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGATTTACCAAAACTGTCGGTGCCACATCCGAGAATGA  >  CP000730/553107‑553384                                                                                                                                             |                                                                                                                                            gaatgaatATGATGGTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATAGTGAGCAACCTAACTTTTTAGATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAAtg                                                                                                                                           >  2:222091‑M2/1‑139 (MQ=255)       atatGATGGTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAAtgttgttt                                                                                                                                     <  1:162543‑M2/141‑9 (MQ=255)                   tAACGTATCTAATATTTCTCCGAATTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAAATTTTTAAATTTGTGTGTTGAAATTCAAAAAACACTC‑‑AAAGTATTACAACTGTTGGAATGTTGTTTGAAGACagacga                                                                                                                         >  2:388489/1‑141 (MQ=255)                          tCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTa                                                                                                                  <  1:14508/141‑1 (MQ=255)                                atTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGt                                                                                                            >  1:178654/1‑141 (MQ=255)                                    ctcCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTa                                                                                                        <  2:485558/141‑1 (MQ=255)                                         aTTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAg                                                                                                   <  2:209193/141‑1 (MQ=255)                                            tATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGaa                                                                                                >  1:234995/1‑141 (MQ=255)                                               tttctaGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGa                                                                                             <  1:204614/136‑1 (MQ=255)                                                aaaCAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACATTCCAACAGTTGTAATACTGT‑‑GAGtgttgtttgaatttcaacacacaaatttaaaaagttaggttgctcagta                                                                                            >  1:120081‑M2/1‑92 (MQ=255)                                                aaaCAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGAt                                                                                            <  1:349212/141‑1 (MQ=255)                                                       aCCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAgg                                                                                                  <  1:436810/128‑1 (MQ=255)                                                       aCCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAgg                                                                                                  >  2:436810/1‑128 (MQ=255)                                                        ccAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCt                                                                                    >  1:475679/1‑141 (MQ=255)                                                        ccAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCt                                                                                    >  1:475678/1‑141 (MQ=255)                                                          aGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAg                                                                                  >  1:424981/1‑141 (MQ=255)                                                             tGGGTATACTGAGCAACCTAACTTATTATAATGGTCTATTTAAAATCAAACAACACGC‑‑ACAGTATTACAACTGTTGGAGTGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAAc                                                                               <  1:317461/141‑1 (MQ=255)                                                               ggTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACtt                                                                             <  1:61651/141‑1 (MQ=255)                                                                  ataCTGAGCAACTTAACTTTTTAAATCTGTGTGTTGAGATTCAACCAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGCCAGAAGAATGTTTACACCGTATTAGAAAGGAACGATCGGGTACTAGAACTTTaa                                                                          >  2:82992/1‑140 (MQ=255)                                                                    aCTGAGCAACCTAACTTTTTCAATTTGTGTGTTGAAATTCAAACAACCCTC‑‑ACCGTATCACCACCGTCGGCATGAAGTTTCAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGAt                                                                        <  1:420813/141‑1 (MQ=255)                                                                         gCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGa                                                                   <  1:426116/141‑1 (MQ=255)                                                                         gCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGa                                                                   <  1:75135/141‑1 (MQ=255)                                                                         gCAACCTAACTTTGTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGa                                                                   <  2:593002/141‑1 (MQ=255)                                                                                   tttttAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTttgttg                                                         >  2:691346/1‑141 (MQ=255)                                                                                           tttGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGgaga                                                 <  2:306828/141‑1 (MQ=255)                                                                                            ttGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGagaa                                                >  1:358795/1‑141 (MQ=255)                                                                                             tttttgtTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACTGTATTAGAAAGGAACGATGGGGACCTAGAACTTTAGATGTGGATATTTTGTTGTATGGagaag                                               >  2:592865/5‑141 (MQ=255)                                                                                               tgtgtTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGATGTATGGAgaagaa                                             >  2:159338/1‑141 (MQ=255)                                                                                                   ttGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGa                                         >  2:337586/1‑141 (MQ=255)                                                                                                            aaaCAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGATTTAc                                >  1:486119/1‑141 (MQ=255)                                                                                                            aaaCAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGATTTAc                                >  2:310393/1‑141 (MQ=255)                                                                                                            aaaCAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGATTTAc                                >  1:441676/1‑141 (MQ=255)                                                                                                               caacaCTC‑‑ACAGTATTACAACTGTTGGAAtgttgtttgaatttcaacacacaaatttaaaaagttaggttgctcagtatacccaactggtgctgtttcataaatcggagaaatattagatacgttaataccatcatattca                             <  1:215654‑M2/141‑113 (MQ=255)                                                                                                               caacaCTC‑‑ACAGTATTACAACTGTTGGAAtgttgtttgaatttcaacacacaaatttaaaaagttaggttgctcagtatacccaactggtgctgtttcataaatcgg                                                               >  1:110896‑M2/1‑29 (MQ=255)                                                                                                               caacaCTC‑‑ACAGTATTACAACTGTTGGAAtgttgtttgaatttcaacacacaaatttaaaaagttaggttgctcagtatacccaactggtgctgtttcataaatcgg                                                               <  2:110896‑M2/107‑79 (MQ=255)                                                                                                                 acacTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGATTTACCaaaa                           >  1:535183/1‑141 (MQ=255)                                                                                                                    cTC‑‑ACAGTATTACAACTGTTGGAAtgttgtttgaatttcaacacacaaatttaaaaagttaggttgctcagtatacccaactggtgctgtttcataaatcggagaaatattagatacgttaataccatcatattcattcaa                        <  2:377444‑M2/141‑118 (MQ=255)                                                                                                                               ttACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGATTTACCAAAACTGTCGGTGCca               <  1:435726/141‑1 (MQ=255)                                                                                                                                  cAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTAAACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGATTTACCAAAACTGTCGGTGCCACAt            >  1:516424/1‑141 (MQ=255)                                                                                                                                        ttGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGATTTACCAAAACTGTCGGTGCCACATCCgaga      <  1:343661/141‑1 (MQ=255)                                                                                                                                        ttGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGATTTACCAAAACTGTCGGTGCCACATCCgaga      >  2:78159/1‑141 (MQ=255)                                                                                                                                           gAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGATTTACCAAAACTGTCGGTGCCACATCCGAgaatg   >  2:315774/1‑141 (MQ=255)                                                                                                                                            aaTGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGATTTACCAAAACTGTCGGTGCCACATCCGAgaatga  >  2:316604/1‑141 (MQ=255)                                                                                                                                             |                                                                                                                                            GAATGAATATGATGGTATTAACGTATCTAATATTTCTCCGATTTATGAAACAGCACCAGTTGGGTATACTGAGCAACCTAACTTTTTAAATTTGTGTGTTGAAATTCAAACAACACTC‑‑ACAGTATTACAACTGTTGGAATGTTGTTTGAAGACAGAAGAATGTTTACACCGTATTAGAAAGGAACGATGGGGTCCTAGAACTTTAGATGTGGATATTTTGTTGTATGGAGAAGAAATGATAGATTTACCAAAACTGTCGGTGCCACATCCGAGAATGA  >  CP000730/553107‑553384

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.