New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	704277 =	52 (1.110)	6 (0.130)	6/264	5.8	10.4%	intergenic (+27/+1133)	nhaK/psaA	possible CPA1 family monovalent cation (K+ or Na+):proton (H+) antiporter‑1/ABC superfamily ATP binding cassette transporter, binding protein
	?	CP000730	2290693 =	NA (NA)					intergenic (‑107/‑119)	arg/USA300HOU_2155	arginase/transposase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AATTCGTATAGTTTAAAACTATCTATTCAATTCCCCTAAAATAAAAGGGATTGATGAAAAGCCCTTCAGTTTTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/704352‑704277 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATACACAAAAAGCGCAATTGCCTCTATAATTTAAAGTGACCAAACCCAAACTAAAGGAGACAAGTGCGCCTATG  >  CP000730/2290693‑2290814                                                                                                                                                                                                        AATTCGTATAGTTTAAAACTATCTATTCAATTCCCCTAAAATAAAAGGGATTGATGAAAAGCCCTTCAGTTTTTCAGGTTCTTCATATTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATACACAAAAAGCGCAA                                                           <  1:563164/141‑1               AAAACTATCTATTCAATTCCCCTAAAATAAAAGGGATTGATGAAAAGCCCTTCAGTTTTTCAGGTTCTTCATATTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATACACAAAAAGCGCAATTGCCTCTATAATT                                             <  2:154613/141‑1                              ATTCCCCTAAAATAAAAGGGATTGATGAAAAGCCCTTCAGTTTTTCAGGTTCTTCATATTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATACACAAAAAGC                                                               <  1:203636/108‑1                              ATTCCCCTAAAATAAAAGGGATTGATGAAAAGCCCTTCAGTTTTTCAGGTTCTTCATATTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATACACAAAAAGC                                                               >  2:203636/1‑108                                                  ATTGATGAAAAGCCCTTCAGTTTTTCAGGTTCTTCATATTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATACACAAAAAGCGCAATTGCCTCTATAATTTAAAGTGACCAAACCCAAACTAAAGGAGACAAGTG          <  2:266105/141‑1                                                          AAAGCCCTTCAGTTTTTCAGGTTCTTCATATTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATACACAAAAAGCGCAATTGCCTCTATAATTTAAAGTGACCAAACCCAAACTAAAGGAGACAAGTGCGCCTATG  >  2:433275/1‑141                                                                                                                                                                                                        AATTCGTATAGTTTAAAACTATCTATTCAATTCCCCTAAAATAAAAGGGATTGATGAAAAGCCCTTCAGTTTTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/704352‑704277 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATACACAAAAAGCGCAATTGCCTCTATAATTTAAAGTGACCAAACCCAAACTAAAGGAGACAAGTGCGCCTATG  >  CP000730/2290693‑2290814

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.