| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 704277 = | 52 (1.110) | 6 (0.130) | 6/264 | 5.8 | 10.4% | intergenic (+27/+1133) | nhaK/psaA | possible CPA1 family monovalent cation (K+ or Na+):proton (H+) antiporter‑1/ABC superfamily ATP binding cassette transporter, binding protein |
| ? | CP000730 | 2290693 = | NA (NA) | intergenic (‑107/‑119) | arg/USA300HOU_2155 | arginase/transposase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AATATCAATTGCTTTTGTCTTTGTCATAAGCGTCCCCCTTTGCTCTATGTAATTAAAGAATAATGTATGCGCTTACCATTATCAAGCAATAGCTACACATATAATCTGTTTATCTTATTACTTCATAAAAAAAGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATACACAAAAAGCGCAATTGCCTCTATAATTTAAAGTGACCAAACCCAAACTAAAGGAGACAAGTGCGCCTATGTGTAATGATACCTTAGA > CP000730/2290560‑2290831 | actatCAATTGCTTTTGTCTTTTTCATAGGCGTCCCCCTTTGCTCTATGTAATTAAAGAATAATGTATGCGCTTACCATTATCACGCAATAGCTACACATATAATCTGTTTATCTTATTACTTCATAAAATAAGGttcttc < 2:56242/139‑1 (MQ=255) tCAATTGCTTTTGTCTTTGTCATAAGCGTCCCCCTTTGCTCTATGTAATTAAAGAATAATGTATGCGCTTACCATTATCAAGCAATAGCTACACATATAATCTGTTTATCTTATTACTTCATAAAAAAAGGTTCTTCATCt < 2:116230/141‑1 (MQ=255) aaTTGCTTTTGTCTTTGTCATAAGCGTCCCCCTTTGCTCTATGTAATTAAAGAATAATGTATGCGCTTACCATTATCAAGCAATAGCTACACATATAATCTGTTTATCTTATTACTTCATAAAAAAAGGTTCTTCATCttt > 1:438/1‑141 (MQ=255) ttGCTTTTGTCTTTGTCATAAGCGTCCCCCTTTGCTCTATGTAATTAAAGAATAATGTATGCGCTTACCATTATCAAGCAATAGCTACACATATAATCTGTTTATCTTATTACTTCATAAAAAAAGGTTCTTCATCTTTTa < 1:212750/141‑1 (MQ=255) tttgtcATAAGCGTCCCCCTTTGCTCTATGTAATTAAAGAATAATGTATGCGCTTACCATTATCAAGCAATAGCTACACATATAATCTGTTTATCTTATTACTTCATAAAAAAAGGTTCTTCATCTTTTATGGTGGGAAgg < 1:392590/141‑1 (MQ=255) gtcATAAGCGTCCCCCTTTGCTCTATGTAATTAAAGAATAATGTATGCGCTTACCATTATCAAGCAATAGCTACACATATAATCTGTTTATCTTATTACTTCATAAAAAAAGGTTCTTCATCTTTTATGGTGGGAAGGTaa < 1:547586/141‑1 (MQ=255) aTAAGCGTCCCCCTTTGCTCTATGTAATTAAAGAATAATGTATGCGCTTACCATTATCAAGCAATAGCTACACATATAATCTGTTTATCTTATTACTTCATAAAAAAAGGTTCTTCATCTTTTATGGTGGGAAGGTAAAAc > 2:429418/1‑141 (MQ=255) aGCGTCCCCCTTTGCTCTATGTAATTAAAGAATAATGTATGCGCTTACCATTATCAAGCAATAGCTACACATATAATCTGTTTATCTTATTACTTCATAAAAAAAGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTc > 2:115627/1‑141 (MQ=255) gCGTCCCCCTTTGCTCTCTGTAATTAAAGAATAATGTATGCTCTTTCCATTATAAAGCAATAGCTACTCATACAATCTGTTCATCTTATTACCTCATAAAAACAGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTcc < 2:464692/141‑1 (MQ=37) gCGTCCCCCTTTGCTCTATGTAATTAAAGAATAATGTATGCGCATACCATTATCAAGCAATAGCTACACATATAATCTGTTTATCTTATTACTTCATAAAAAAAGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTcc < 1:416840/141‑1 (MQ=255) tCCCCCTTTGCTCTATGTAATTAAAGTATAATGCATGCGATTACCAGTATCAAGCAATAGCTACACATATAATCTGTTTATCTTATTACTTCATAAAAAAAGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTCCTGc < 1:22156/141‑1 (MQ=255) tCCCCCTTTGCTCTATGTAATTAAAGAATAATGTATGCGCTTACCATTATCAAGCAATAGCTACACATATAATCTGTTTATATTATTACTTCATAAAAAAAGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTCCTGc < 2:190065/141‑1 (MQ=255) ccccTTTGCTCTATGTAATTAAAGAATAATGTATGCGCTTACCATTATCAAGCAATAGCTACACATATAATCTGTTTATCTTATTACTTCATAAAAAAAGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTCCTGCtt > 2:127034/1‑141 (MQ=255) ccTTTGCTCTATGTAATTAAAGAATAATGTATGCGCTTACCATTATCAAGCAATAGCTACACATATAATCTGTTTATCTTATTACTTCATAAAAAAAGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTCCTGCtttt > 1:394415/1‑141 (MQ=255) tGCTCTATGTAATTAAAGAATAATGTATGCGCTTACCATTATCAAGCAATAGCTACACATATAATCTGTTTATCTTATTACTTCATAAAAAAAGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTa > 1:472454/1‑141 (MQ=255) tctATGTAATTAAAGAATAATGTATGCGCTTACCATTATCAAGCAATAGCTACACATATAATCTGTTTATCTTATTACTTCATAAAAAAAGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATa > 2:391492/1‑141 (MQ=255) tATGTAATTAAAGAATAATGTATGCGCTTACCATTATCAAGCAATAGCTACACATATAATCTGTTTATCTTATTACTTCATAAAAAAAGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATaca > 1:391161/1‑141 (MQ=255) aTTAAAGAATAATGTAAGCGCTTAACATTATCAAGCAATAGCTACACATATAATCGGTTTATCTTATTACTTCATAAAAAAAGGTTCTTCATATTTTATGGTGCGAAGGTAAAACTTCCTACTTTTTTTAATTCACacaaa > 2:600519/1‑141 (MQ=255) tAAAGAATAATATATGCGCTTACCATTATCAAGCAATAGCTACACATATAATCTGTTTATCTTATTACTTCATAAAAAAAGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATACACAAAAAgc < 2:416105/141‑1 (MQ=255) aGAATAATGTATGCGCTTACCATTATCAAGCAATAGCTACACATATAATCTGTTTATCTTATTACTTCATAAAAAAAGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATACACAAGAAGCGCa > 1:543232/1‑141 (MQ=255) atttATGCGCTTACCATCATCAAGCAATAGCTACACATATAATCTGTTTATCTTATTACTTCTTAAAAAAAGGTTCATCATCTTATATGGTTGGGAGGTAAAACTACCTGCTTGGTTTAATACACAAAAAGCACAACTGcc > 2:539437/4‑141 (MQ=255) gTATGCGCTTACCATTATCAAGCAATAGCTACACATATAATCTGTTTATCTTATTACTTCATAAAAAAAAGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATACACAAAAAGCGCAATTGCctc > 1:35701/1‑141 (MQ=255) aTGCGCTTACCATTATCAAGCAATAGCTACACATATAATCTGTTTATCTTATTACTTCATAAAAAAAGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATACACAAAAAGAGCAATTGCCTCta > 2:297052/1‑141 (MQ=255) cTTACCATTATCAAGCAATAGCTACACATATAATCTGTTTATCTTATTACTTCATAAAAAAAGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATACACAAAAAGCGCAATTGCCTCTATAAtt < 1:294297/141‑1 (MQ=255) aGCTACACATATAATCTGTTTATCTTATTACTTCATAAAAAAAGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATACACAAAAAGCGCAATTGCCTCTATAATTTAAAGTGAccaaacccaaa > 2:345481/1‑141 (MQ=255) tACACATATAATCTGTTTATCTTATTACTTCATAAAAAAAGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATACACAAAAAGCGCAATTGCCTCTATAATTTAAAGTGACCAAACCCAAACTa < 2:58496/141‑1 (MQ=255) cacaTATAATCTGTTTATCTTATTACTTCATAAAAAAAGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTCCTGc < 1:123737/78‑1 (MQ=255) cacaTATAATCTGTTTATCTTATTACTTCATAAAAAAAGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTCCTGc > 2:123737/1‑78 (MQ=255) acaTATAATCTGTTTATCTTATTACTTCATAAAAAAAGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATACACAAAAAGCGCAATTGCCTCTATAATTTAAAGTGACCAAACCCAAACTAAAg > 1:283590/1‑141 (MQ=255) ataATCTGTTTATCTTATTACTTCATAAAAAAAGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATACACAAAAAGCGCAATTGCCTCTATAATTTAAAGTGACCAAACCCAAACTAAAGgaga < 2:417208/141‑1 (MQ=255) taATCTGTTTATCTTATTACTTCAAAAAAAAAGGTTCTGCAACTTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATACACAAAAAGCGCAATTGCCTCTATAATTTAAAGTGACCAAACCCAAACTAAAGGAGAc < 1:170725/141‑1 (MQ=255) aaTCTGTTTATCTTATTACTTCATAAAAAAAGGTTCTTCATCTTTTATGGTggg < 2:309615/54‑1 (MQ=255) aaTCTGTTTATCTTATTACTTCATAAAAAAAGGTTCTTCATCTTTTATGGTggg > 1:309615/1‑54 (MQ=255) aaTCTGTTTATCTTATTACTTCATAAAAAAAGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATACACAAAAAGCGCAATTGCCTCTATAATTTAAAGTGACCAAACCCAAACTAAAGGAGACa < 2:141417/141‑1 (MQ=255) tCTGTTTATCTTATTACTTCATAAAAAAAGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATACACAAAAAGCGCAATTGCCTCTATAATTTAAAGTGACCAAACCCAAACTAAAGGAGACAAg < 2:472454/141‑1 (MQ=255) tCTGTTGATCTTATTACTTCATAAAAAAAGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATACACAAAAAGCGCAATTGCCTCTATAATTTAAAGCGACCAAACCCAAACTAAAGGAGACAAg < 2:474879/141‑1 (MQ=255) tttATCTTATTACTTCATAAAAAAAGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATACACAAAAAGCGCAATTGCCTCTATAATTTAAAGTGACCAAACCCAAACTAAAGGAGACAAGTgcg < 1:486791/141‑1 (MQ=255) tttATCTTATTACTTCATAAAAAAAGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATACACAAAAAGCGCAATTGCCTCTATAATTTAAAGTGACCAAACCCAAACTAAAGGAGACAAGTgcg < 1:157051/141‑1 (MQ=255) ttATCTTATTACTTCATAAAAAAAGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATACACAAAAAGCGCAATTGCCTCTATAATTTAAAGTGACCAAACCCAAACTAAAGGAGACAAGTgcgc > 1:335956/1‑141 (MQ=255) ttATCTTATTACTTCATAAAAAAAGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATACACAAAAAGCGCAATTGCCTCTATAATTTAAAGTGACCAAACCCAAACTAAAGGAGACAAGTgcgc < 1:411154/141‑1 (MQ=255) aTCTTATTACTTCATAAAAAAAGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATACACAAAAAGCGCAATTGCCTCTATAATTTAAAGTGACCAAACCCAAACTAAAGGAGACAAGTGCGCCt > 2:284436/1‑141 (MQ=255) tCTTATTACTTCATAAAAAAAGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATACACAAAAAGCGCAATTGCCTCTATAATTTAAAGTGACCAAACCCAAACTAAAGGAGACAAGTGCGCCTa > 1:33169/1‑141 (MQ=255) cTTATTACTTCATAAAAAAAGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATACACAAAAAGCGCAATTGCCTCTATAATTTAAAGTGACCAAACCCAAACTAAAGGAGACAAGTGCGCCTAt > 1:19913/1‑141 (MQ=255) cTTCATAAAAAAAGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATACACAAAAAGCGCAATTGCCTCTATAATTTAAAGTGACCAAACCCAAACTAAAGGAGACAAGTGCGCCTATGTGTAAt > 1:161849/1‑141 (MQ=39) cATAAAAAAAGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATACACAAAAAGCGCAATTGCCTCTATAATTTAAAGTGACCAAACCCAAACTAAAGGAGACAAGTGCGCCTATGTGTAATGAt > 1:191390/1‑141 (MQ=37) cATAAAAAAAGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATACACAAAAAGCGCAATTGCCTCTATAATTTAAAGTGACCAAACCCAAACTAAAGGAGACAAGTGCGCCTATGTGTAATGAt > 1:430136/1‑141 (MQ=37) tAAAAAAAGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATACACAAAAAGCGCAATGGCCTCGATAATTTAAAGTTACCAAACCCAAACTAAAGGAGACAAGTGCGCCTATGTGTAATGATAc > 1:569106/1‑141 (MQ=255) aaaaGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATACACAAAAAGCGCAATTGCCTCTATAATTTAAAGTGACCAAACCCAAACTAAAGGAGACAAGTGCGCCTATGTGTAATGATACCTTa > 2:72048/1‑141 (MQ=32) aaGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATACACAAAAAGCGCAATTGCCTCTATAATTTAAAGTGACCAAACCCAAACTAAAGGAGACAAGTGCGCCTATGTGTAATGATACCTTAGa < 1:168668/141‑1 (MQ=11) aaGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATACACAAAAAGCGCAATTGCCTCTATAATTTAAAGTGACCAAACCCAAACTAAAGGAGACAAGTGCGCCTATGTGTAATGATACCTTAGa > 2:403513/1‑141 (MQ=11) | AATATCAATTGCTTTTGTCTTTGTCATAAGCGTCCCCCTTTGCTCTATGTAATTAAAGAATAATGTATGCGCTTACCATTATCAAGCAATAGCTACACATATAATCTGTTTATCTTATTACTTCATAAAAAAAGGTTCTTCATCTTTTATGGTGGGAAGGTAAAACTTCCTGCTTTTTTTAATACACAAAAAGCGCAATTGCCTCTATAATTTAAAGTGACCAAACCCAAACTAAAGGAGACAAGTGCGCCTATGTGTAATGATACCTTAGA > CP000730/2290560‑2290831 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |